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PMC:3589482 / 503-722 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T856 114-122 NN denotes promoter
T855 105-113 CD denotes SerpinB2
T854 91-104 JJ denotes LPS-regulated
T853 87-90 DT denotes the
T852 83-86 VB denotes map
T851 80-82 TO denotes To
T850 78-79 . denotes .
T849 67-78 NNS denotes macrophages
T848 60-66 JJ denotes murine
T847 57-59 IN denotes in
T846 53-56 NNS denotes hrs
T845 50-52 CD denotes 24
T844 47-49 IN denotes of
T843 40-46 NN denotes period
T842 38-39 DT denotes a
T841 33-37 IN denotes over
T840 23-32 JJ denotes 1000-fold
T839 22-23 CD denotes ∼
T838 19-21 IN denotes by
T837 17-18 -RRB- denotes )
T836 13-17 CD denotes TLR4
T835 12-13 -LRB- denotes (
T834 10-11 CD denotes 4
T833 1-9 NN denotes receptor
T876 213-219 NN denotes murine
T875 209-212 DT denotes the
T874 206-208 IN denotes of
T873 199-205 NN denotes region
T872 190-198 VBG denotes flanking
T871 189-190 : denotes -
T870 188-189 '' denotes '
T869 187-188 CD denotes 5
T868 184-186 NN denotes kb
T867 182-183 CD denotes 5
T866 181-182 NN denotes ∼
T865 177-180 DT denotes the
T864 174-176 IN denotes by
T863 167-173 VBN denotes driven
T862 156-166 NNS denotes constructs
T861 147-155 NN denotes reporter
T860 135-146 VBD denotes transfected
T859 132-134 PRP denotes we
T858 130-131 , denotes ,
T857 123-130 NNS denotes regions
R421 T834 T833 nummod 4,receptor
R422 T835 T833 punct (,receptor
R423 T836 T833 appos TLR4,receptor
R424 T837 T833 punct ),receptor
R426 T839 T838 pobj ∼,by
R428 T841 T840 prep over,1000-fold
R429 T842 T843 det a,period
R430 T843 T841 pobj period,over
R431 T844 T843 prep of,period
R432 T845 T846 nummod 24,hrs
R433 T846 T844 pobj hrs,of
R434 T847 T846 prep in,hrs
R435 T848 T849 amod murine,macrophages
R436 T849 T847 pobj macrophages,in
R438 T851 T852 aux To,map
R439 T852 T860 advcl map,transfected
R440 T853 T857 det the,regions
R441 T854 T857 amod LPS-regulated,regions
R442 T855 T857 nummod SerpinB2,regions
R443 T856 T857 compound promoter,regions
R444 T857 T852 dobj regions,map
R445 T858 T860 punct ",",transfected
R446 T859 T860 nsubj we,transfected
R447 T860 T860 ROOT transfected,transfected
R448 T861 T862 compound reporter,constructs
R449 T862 T860 dobj constructs,transfected
R450 T863 T862 acl driven,constructs
R451 T864 T863 agent by,driven
R452 T865 T873 det the,region
R453 T866 T868 nmod ∼,kb
R454 T867 T866 nummod 5,∼
R455 T868 T872 meta kb,flanking
R456 T869 T868 nummod 5,kb
R457 T870 T869 punct ',5
R458 T871 T872 punct -,flanking
R459 T872 T873 amod flanking,region
R460 T873 T864 pobj region,by
R461 T874 T873 prep of,region

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T307 50-52 CD denotes 24
T306 47-49 IN denotes of
T305 40-46 NN denotes period
T304 38-39 DT denotes a
T303 33-37 IN denotes over
T302 22-32 RB denotes ∼1000-fold
T301 19-21 IN denotes by
T300 17-18 -RRB- denotes )
T299 13-17 NN denotes TLR4
T298 12-13 -LRB- denotes (
T297 10-11 CD denotes 4
T296 1-9 NN denotes receptor
T333 213-219 JJ denotes murine
T332 209-212 DT denotes the
T331 206-208 IN denotes of
T330 199-205 NN denotes region
T329 187-198 JJ denotes 5'-flanking
T328 184-186 NN denotes kb
T327 181-183 CD denotes ∼5
T326 177-180 DT denotes the
T325 174-176 IN denotes by
T324 167-173 VB denotes driven
T323 156-166 NN denotes constructs
T322 147-155 NN denotes reporter
T321 135-146 VB denotes transfected
T320 132-134 PRP denotes we
T319 130-131 -COMMA- denotes ,
T318 123-130 NN denotes regions
T317 114-122 NN denotes promoter
T316 105-113 NN denotes SerpinB2
T315 91-104 JJ denotes LPS-regulated
T314 87-90 DT denotes the
T313 83-86 VB denotes map
T312 80-82 TO denotes To
T311 67-78 NN denotes macrophages
T310 60-66 JJ denotes murine
T309 57-59 IN denotes in
T308 53-56 NN denotes hrs
R110 T296 T297 arg1Of receptor,4
R111 T296 T298 arg1Of receptor,(
R112 T299 T298 arg2Of TLR4,(
R113 T300 T298 arg3Of ),(
R114 T302 T301 arg2Of ∼1000-fold,by
R115 T305 T303 arg2Of period,over
R116 T305 T304 arg1Of period,a
R117 T305 T306 arg1Of period,of
R118 T305 T309 arg1Of period,in
R119 T308 T306 arg2Of hrs,of
R120 T308 T307 arg1Of hrs,24
R121 T311 T309 arg2Of macrophages,in
R122 T311 T310 arg1Of macrophages,murine
R123 T313 T312 arg1Of map,To
R124 T318 T313 arg2Of regions,map
R125 T318 T314 arg1Of regions,the
R126 T318 T315 arg1Of regions,LPS-regulated
R127 T318 T316 arg1Of regions,SerpinB2
R128 T318 T317 arg1Of regions,promoter
R129 T320 T313 arg1Of we,map
R130 T320 T321 arg1Of we,transfected
R131 T321 T312 modOf transfected,To
R132 T321 T319 arg1Of transfected,","
R133 T323 T321 arg2Of constructs,transfected
R134 T323 T322 arg1Of constructs,reporter
R135 T323 T324 arg2Of constructs,driven
R136 T330 T324 arg1Of region,driven
R137 T330 T325 arg2Of region,by
R138 T330 T326 arg1Of region,the
R139 T330 T327 arg1Of region,∼5
R140 T330 T328 arg1Of region,kb
R141 T330 T329 arg1Of region,5'-flanking
R142 T330 T331 arg1Of region,of

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T164 13-17 Protein denotes TLR4
T165 105-113 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T539 13-17 http://www.uniprot.org/uniprot/O00206 denotes TLR4
T532 105-113 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

simple1

Id Subject Object Predicate Lexical cue
T217 13-17 Protein denotes TLR4
T218 105-113 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T500 105-113 Protein denotes SerpinB2
T498 13-17 Protein denotes TLR4

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T608 13-17 Protein denotes TLR4
T610 105-113 Protein denotes SerpinB2

DLUT931

Id Subject Object Predicate Lexical cue
T574 13-17 Protein denotes TLR4
T576 105-113 Protein denotes SerpinB2

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T760 50-78 Localization denotes 24 hrs in murine macrophages
T715 13-17 Protein denotes TLR4
T719 50-78 Protein denotes 24 hrs in murine macrophages
T720 105-113 Protein denotes SerpinB2
T724 60-78 Entity denotes murine macrophages
T729 87-131 Entity denotes the LPS-regulated SerpinB2 promoter regions,
T741 91-104 Entity denotes LPS-regulated
R721 T719 T760 themeOf 24 hrs in murine macrophages,24 hrs in murine macrophages
R723 T724 T760 locationOf murine macrophages,24 hrs in murine macrophages

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T648 105-122 Protein denotes SerpinB2 promoter

testone

Id Subject Object Predicate Lexical cue
T28 105-113 Protein denotes SerpinB2
T27 13-17 Protein denotes TLR4

test3

Id Subject Object Predicate Lexical cue
T79 105-113 Protein denotes SerpinB2
T78 13-17 Protein denotes TLR4
T57 105-113 Protein denotes SerpinB2
T56 13-17 Protein denotes TLR4