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PMC:3589482 / 489-657 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T856 128-136 NN denotes promoter
T855 119-127 CD denotes SerpinB2
T854 105-118 JJ denotes LPS-regulated
T853 101-104 DT denotes the
T852 97-100 VB denotes map
T851 94-96 TO denotes To
T850 92-93 . denotes .
T849 81-92 NNS denotes macrophages
T848 74-80 JJ denotes murine
T847 71-73 IN denotes in
T846 67-70 NNS denotes hrs
T845 64-66 CD denotes 24
T844 61-63 IN denotes of
T843 54-60 NN denotes period
T842 52-53 DT denotes a
T841 47-51 IN denotes over
T840 37-46 JJ denotes 1000-fold
T839 36-37 CD denotes ∼
T838 33-35 IN denotes by
T837 31-32 -RRB- denotes )
T836 27-31 CD denotes TLR4
T835 26-27 -LRB- denotes (
T834 24-25 CD denotes 4
T833 15-23 NN denotes receptor
T832 5-14 JJ denotes toll-like
T831 1-4 DT denotes the
T860 149-160 VBD denotes transfected
T859 146-148 PRP denotes we
T858 144-145 , denotes ,
T857 137-144 NNS denotes regions
R418 T831 T833 det the,receptor
R419 T832 T833 amod toll-like,receptor
R421 T834 T833 nummod 4,receptor
R422 T835 T833 punct (,receptor
R423 T836 T833 appos TLR4,receptor
R424 T837 T833 punct ),receptor
R426 T839 T838 pobj ∼,by
R428 T841 T840 prep over,1000-fold
R429 T842 T843 det a,period
R430 T843 T841 pobj period,over
R431 T844 T843 prep of,period
R432 T845 T846 nummod 24,hrs
R433 T846 T844 pobj hrs,of
R434 T847 T846 prep in,hrs
R435 T848 T849 amod murine,macrophages
R436 T849 T847 pobj macrophages,in
R438 T851 T852 aux To,map
R439 T852 T860 advcl map,transfected
R440 T853 T857 det the,regions
R441 T854 T857 amod LPS-regulated,regions
R442 T855 T857 nummod SerpinB2,regions
R443 T856 T857 compound promoter,regions
R444 T857 T852 dobj regions,map
R445 T858 T860 punct ",",transfected
R446 T859 T860 nsubj we,transfected
R447 T860 T860 ROOT transfected,transfected

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T307 64-66 CD denotes 24
T306 61-63 IN denotes of
T305 54-60 NN denotes period
T304 52-53 DT denotes a
T303 47-51 IN denotes over
T302 36-46 RB denotes ∼1000-fold
T301 33-35 IN denotes by
T300 31-32 -RRB- denotes )
T299 27-31 NN denotes TLR4
T298 26-27 -LRB- denotes (
T297 24-25 CD denotes 4
T296 15-23 NN denotes receptor
T295 5-14 JJ denotes toll-like
T294 1-4 DT denotes the
T321 149-160 VB denotes transfected
T320 146-148 PRP denotes we
T319 144-145 -COMMA- denotes ,
T318 137-144 NN denotes regions
T317 128-136 NN denotes promoter
T316 119-127 NN denotes SerpinB2
T315 105-118 JJ denotes LPS-regulated
T314 101-104 DT denotes the
T313 97-100 VB denotes map
T312 94-96 TO denotes To
T311 81-92 NN denotes macrophages
T310 74-80 JJ denotes murine
T309 71-73 IN denotes in
T308 67-70 NN denotes hrs
R108 T296 T294 arg1Of receptor,the
R109 T296 T295 arg1Of receptor,toll-like
R110 T296 T297 arg1Of receptor,4
R111 T296 T298 arg1Of receptor,(
R112 T299 T298 arg2Of TLR4,(
R113 T300 T298 arg3Of ),(
R114 T302 T301 arg2Of ∼1000-fold,by
R115 T305 T303 arg2Of period,over
R116 T305 T304 arg1Of period,a
R117 T305 T306 arg1Of period,of
R118 T305 T309 arg1Of period,in
R119 T308 T306 arg2Of hrs,of
R120 T308 T307 arg1Of hrs,24
R121 T311 T309 arg2Of macrophages,in
R122 T311 T310 arg1Of macrophages,murine
R123 T313 T312 arg1Of map,To
R124 T318 T313 arg2Of regions,map
R125 T318 T314 arg1Of regions,the
R126 T318 T315 arg1Of regions,LPS-regulated
R127 T318 T316 arg1Of regions,SerpinB2
R128 T318 T317 arg1Of regions,promoter
R129 T320 T313 arg1Of we,map
R130 T320 T321 arg1Of we,transfected
R131 T321 T312 modOf transfected,To
R132 T321 T319 arg1Of transfected,","

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T163 5-25 Protein denotes toll-like receptor 4
T164 27-31 Protein denotes TLR4
T165 119-127 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T539 27-31 http://www.uniprot.org/uniprot/O00206 denotes TLR4
T532 119-127 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

simple1

Id Subject Object Predicate Lexical cue
T216 5-25 Protein denotes toll-like receptor 4
T217 27-31 Protein denotes TLR4
T218 119-127 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T500 119-127 Protein denotes SerpinB2
T498 27-31 Protein denotes TLR4
T497 5-25 Protein denotes toll-like receptor 4

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T607 5-25 Protein denotes toll-like receptor 4
T608 27-31 Protein denotes TLR4
T610 119-127 Protein denotes SerpinB2

DLUT931

Id Subject Object Predicate Lexical cue
T573 5-25 Protein denotes toll-like receptor 4
T574 27-31 Protein denotes TLR4
T576 119-127 Protein denotes SerpinB2

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T760 64-92 Localization denotes 24 hrs in murine macrophages
T714 1-32 Protein denotes the toll-like receptor 4 (TLR4)
T715 27-31 Protein denotes TLR4
T719 64-92 Protein denotes 24 hrs in murine macrophages
T720 119-127 Protein denotes SerpinB2
T724 74-92 Entity denotes murine macrophages
T729 101-145 Entity denotes the LPS-regulated SerpinB2 promoter regions,
T741 105-118 Entity denotes LPS-regulated
R721 T719 T760 themeOf 24 hrs in murine macrophages,24 hrs in murine macrophages
R723 T724 T760 locationOf murine macrophages,24 hrs in murine macrophages

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T648 119-136 Protein denotes SerpinB2 promoter

testone

Id Subject Object Predicate Lexical cue
T28 119-127 Protein denotes SerpinB2
T27 27-31 Protein denotes TLR4
T26 5-25 Protein denotes toll-like receptor 4
R3 T27 T26 equivalentTo TLR4,toll-like receptor 4

test3

Id Subject Object Predicate Lexical cue
T79 119-127 Protein denotes SerpinB2
T78 27-31 Protein denotes TLR4
T77 5-25 Protein denotes toll-like receptor 4
T57 119-127 Protein denotes SerpinB2
T56 27-31 Protein denotes TLR4
T55 5-25 Protein denotes toll-like receptor 4
R19 T78 T77 equivalentTo TLR4,toll-like receptor 4