PMC:3589482 / 4840-5083 JSONTXT

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    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T3078","span":{"begin":224,"end":233},"obj":"VBD"},{"id":"T3077","span":{"begin":213,"end":223},"obj":"NN"},{"id":"T3076","span":{"begin":209,"end":212},"obj":"PRP$"},{"id":"T3075","span":{"begin":205,"end":208},"obj":"CC"},{"id":"T3074","span":{"begin":200,"end":204},"obj":"NN"},{"id":"T3073","span":{"begin":197,"end":199},"obj":"IN"},{"id":"T3072","span":{"begin":192,"end":196},"obj":"NN"},{"id":"T3071","span":{"begin":187,"end":191},"obj":"DT"},{"id":"T3070","span":{"begin":184,"end":186},"obj":"TO"},{"id":"T3069","span":{"begin":178,"end":183},"obj":"VBN"},{"id":"T3068","span":{"begin":169,"end":177},"obj":"RB"},{"id":"T3067","span":{"begin":167,"end":168},"obj":"NN"},{"id":"T3066","span":{"begin":166,"end":167},"obj":":"},{"id":"T3065","span":{"begin":161,"end":166},"obj":"SYM"},{"id":"T3064","span":{"begin":159,"end":160},"obj":"."},{"id":"T3063","span":{"begin":156,"end":159},"obj":"CD"},{"id":"T3062","span":{"begin":155,"end":156},"obj":"NN"},{"id":"T3061","span":{"begin":154,"end":155},"obj":"NN"},{"id":"T3060","span":{"begin":151,"end":154},"obj":"CD"},{"id":"T3059","span":{"begin":150,"end":151},"obj":"CD"},{"id":"T3058","span":{"begin":147,"end":149},"obj":"IN"},{"id":"T3057","span":{"begin":142,"end":146},"obj":"NN"},{"id":"T3056","span":{"begin":134,"end":141},"obj":"JJ"},{"id":"T3055","span":{"begin":128,"end":133},"obj":"NNP"},{"id":"T3054","span":{"begin":126,"end":127},"obj":"DT"},{"id":"T3053","span":{"begin":121,"end":125},"obj":"IN"},{"id":"T3052","span":{"begin":111,"end":120},"obj":"JJ"},{"id":"T3051","span":{"begin":100,"end":110},"obj":"RB"},{"id":"T3050","span":{"begin":97,"end":99},"obj":"VBZ"},{"id":"T3049","span":{"begin":93,"end":96},"obj":"CC"},{"id":"T3048","span":{"begin":91,"end":92},"obj":","},{"id":"T3047","span":{"begin":83,"end":91},"obj":"NN"},{"id":"T3046","span":{"begin":74,"end":82},"obj":"NNP"},{"id":"T3045","span":{"begin":67,"end":73},"obj":"NN"},{"id":"T3044","span":{"begin":63,"end":66},"obj":"DT"},{"id":"T3043","span":{"begin":60,"end":62},"obj":"IN"},{"id":"T3042","span":{"begin":56,"end":59},"obj":"CD"},{"id":"T3041","span":{"begin":55,"end":56},"obj":"CD"},{"id":"T3040","span":{"begin":51,"end":54},"obj":"CC"},{"id":"T3039","span":{"begin":47,"end":50},"obj":"CD"},{"id":"T3038","span":{"begin":46,"end":47},"obj":"VBP"},{"id":"T3037","span":{"begin":34,"end":45},"obj":"NNS"},{"id":"T3036","span":{"begin":26,"end":33},"obj":"IN"},{"id":"T3035","span":{"begin":19,"end":25},"obj":"NN"},{"id":"T3034","span":{"begin":15,"end":18},"obj":"DT"},{"id":"T3033","span":{"begin":12,"end":14},"obj":"IN"},{"id":"T3032","span":{"begin":2,"end":11},"obj":"NNS"}],"relations":[{"id":"R2162","pred":"prep","subj":"T3033","obj":"T3032"},{"id":"R2167","pred":"det","subj":"T3034","obj":"T3035"},{"id":"R2172","pred":"pobj","subj":"T3035","obj":"T3033"},{"id":"R2179","pred":"pobj","subj":"T3037","obj":"T3036"},{"id":"R2181","pred":"dobj","subj":"T3039","obj":"T3038"},{"id":"R2182","pred":"cc","subj":"T3040","obj":"T3039"},{"id":"R2184","pred":"conj","subj":"T3041","obj":"T3039"},{"id":"R2185","pred":"conj","subj":"T3042","obj":"T3039"},{"id":"R2186","pred":"prep","subj":"T3043","obj":"T3042"},{"id":"R2187","pred":"det","subj":"T3044","obj":"T3047"},{"id":"R2188","pred":"compound","subj":"T3045","obj":"T3047"},{"id":"R2189","pred":"compound","subj":"T3046","obj":"T3047"},{"id":"R2190","pred":"pobj","subj":"T3047","obj":"T3043"},{"id":"R2194","pred":"advmod","subj":"T3051","obj":"T3052"},{"id":"R2195","pred":"acomp","subj":"T3052","obj":"T3050"},{"id":"R2196","pred":"prep","subj":"T3053","obj":"T3052"},{"id":"R2197","pred":"det","subj":"T3054","obj":"T3057"},{"id":"R2198","pred":"nmod","subj":"T3055","obj":"T3057"},{"id":"R2199","pred":"amod","subj":"T3056","obj":"T3057"},{"id":"R2200","pred":"pobj","subj":"T3057","obj":"T3053"},{"id":"R2201","pred":"prep","subj":"T3058","obj":"T3050"},{"id":"R2202","pred":"nummod","subj":"T3059","obj":"T3063"},{"id":"R2203","pred":"nummod","subj":"T3060","obj":"T3062"},{"id":"R2204","pred":"compound","subj":"T3061","obj":"T3062"},{"id":"R2205","pred":"nummod","subj":"T3062","obj":"T3063"},{"id":"R2206","pred":"pobj","subj":"T3063","obj":"T3058"},{"id":"R2208","pred":"punct","subj":"T3065","obj":"T3067"},{"id":"R2209","pred":"punct","subj":"T3066","obj":"T3067"},{"id":"R2210","pred":"nsubj","subj":"T3067","obj":"T3078"},{"id":"R2211","pred":"advmod","subj":"T3068","obj":"T3069"},{"id":"R2212","pred":"acl","subj":"T3069","obj":"T3067"},{"id":"R2213","pred":"prep","subj":"T3070","obj":"T3069"},{"id":"R2214","pred":"det","subj":"T3071","obj":"T3072"},{"id":"R2215","pred":"pobj","subj":"T3072","obj":"T3070"},{"id":"R2216","pred":"prep","subj":"T3073","obj":"T3072"},{"id":"R2217","pred":"pobj","subj":"T3074","obj":"T3073"},{"id":"R2218","pred":"cc","subj":"T3075","obj":"T3074"},{"id":"R2219","pred":"poss","subj":"T3076","obj":"T3077"},{"id":"R2220","pred":"conj","subj":"T3077","obj":"T3074"},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sequences in the region between nucleotides −189 and −539 of the murine SerpinB2 promoter, and is critically dependent upon a C/EBP binding site at −203/−195. C/EBP-β directly bound to this site in vivo and its deficiency abrogated constitut"}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T1980","span":{"begin":169,"end":177},"obj":"RB"},{"id":"T1990","span":{"begin":224,"end":233},"obj":"VB"},{"id":"T1989","span":{"begin":213,"end":223},"obj":"NN"},{"id":"T1988","span":{"begin":209,"end":212},"obj":"PRP-DOLLAR-"},{"id":"T1987","span":{"begin":205,"end":208},"obj":"CC"},{"id":"T1986","span":{"begin":200,"end":204},"obj":"FW"},{"id":"T1985","span":{"begin":197,"end":199},"obj":"FW"},{"id":"T1984","span":{"begin":192,"end":196},"obj":"NN"},{"id":"T1983","span":{"begin":187,"end":191},"obj":"DT"},{"id":"T1982","span":{"begin":184,"end":186},"obj":"TO"},{"id":"T1981","span":{"begin":178,"end":183},"obj":"VB"},{"id":"T1979","span":{"begin":161,"end":168},"obj":"NN"},{"id":"T1978","span":{"begin":150,"end":159},"obj":"CD"},{"id":"T1977","span":{"begin":147,"end":149},"obj":"IN"},{"id":"T1976","span":{"begin":142,"end":146},"obj":"NN"},{"id":"T1975","span":{"begin":134,"end":141},"obj":"NN"},{"id":"T1974","span":{"begin":128,"end":133},"obj":"NN"},{"id":"T1973","span":{"begin":126,"end":127},"obj":"DT"},{"id":"T1972","span":{"begin":121,"end":125},"obj":"IN"},{"id":"T1971","span":{"begin":111,"end":120},"obj":"JJ"},{"id":"T1970","span":{"begin":100,"end":110},"obj":"RB"},{"id":"T1969","span":{"begin":97,"end":99},"obj":"VB"},{"id":"T1968","span":{"begin":93,"end":96},"obj":"CC"},{"id":"T1967","span":{"begin":91,"end":92},"obj":"-COMMA-"},{"id":"T1966","span":{"begin":83,"end":91},"obj":"NN"},{"id":"T1965","span":{"begin":74,"end":82},"obj":"NN"},{"id":"T1964","span":{"begin":67,"end":73},"obj":"JJ"},{"id":"T1963","span":{"begin":63,"end":66},"obj":"DT"},{"id":"T1962","span":{"begin":60,"end":62},"obj":"IN"},{"id":"T1961","span":{"begin":55,"end":59},"obj":"CD"},{"id":"T1960","span":{"begin":51,"end":54},"obj":"CC"},{"id":"T1959","span":{"begin":46,"end":50},"obj":"CD"},{"id":"T1958","span":{"begin":34,"end":45},"obj":"NN"},{"id":"T1957","span":{"begin":26,"end":33},"obj":"IN"},{"id":"T1956","span":{"begin":19,"end":25},"obj":"NN"},{"id":"T1955","span":{"begin":15,"end":18},"obj":"DT"},{"id":"T1954","span":{"begin":12,"end":14},"obj":"IN"},{"id":"T1953","span":{"begin":2,"end":11},"obj":"NN"}],"relations":[{"id":"R1364","pred":"arg1Of","subj":"T1953","obj":"T1954"},{"id":"R1365","pred":"arg2Of","subj":"T1956","obj":"T1954"},{"id":"R1366","pred":"arg1Of","subj":"T1956","obj":"T1955"},{"id":"R1367","pred":"arg1Of","subj":"T1956","obj":"T1957"},{"id":"R1368","pred":"arg1Of","subj":"T1959","obj":"T1960"},{"id":"R1369","pred":"arg2Of","subj":"T1960","obj":"T1957"},{"id":"R1370","pred":"arg1Of","subj":"T1960","obj":"T1958"},{"id":"R1371","pred":"arg1Of","subj":"T1960","obj":"T1962"},{"id":"R1372","pred":"arg2Of","subj":"T1961","obj":"T1960"},{"id":"R1373","pred":"arg2Of","subj":"T1966","obj":"T1962"},{"id":"R1374","pred":"arg1Of","subj":"T1966","obj":"T1963"},{"id":"R1375","pred":"arg1Of","subj":"T1966","obj":"T1964"},{"id":"R1376","pred":"arg1Of","subj":"T1966","obj":"T1965"},{"id":"R1379","pred":"arg1Of","subj":"T1968","obj":"T1967"},{"id":"R1380","pred":"arg2Of","subj":"T1969","obj":"T1968"},{"id":"R1381","pred":"arg1Of","subj":"T1969","obj":"T1970"},{"id":"R1382","pred":"arg2Of","subj":"T1971","obj":"T1969"},{"id":"R1383","pred":"arg1Of","subj":"T1971","obj":"T1972"},{"id":"R1384","pred":"arg2Of","subj":"T1976","obj":"T1972"},{"id":"R1385","pred":"arg1Of","subj":"T1976","obj":"T1973"},{"id":"R1386","pred":"arg1Of","subj":"T1976","obj":"T1974"},{"id":"R1387","pred":"arg1Of","subj":"T1976","obj":"T1975"},{"id":"R1388","pred":"arg1Of","subj":"T1976","obj":"T1977"},{"id":"R1389","pred":"arg2Of","subj":"T1978","obj":"T1977"},{"id":"R1390","pred":"arg1Of","subj":"T1979","obj":"T1981"},{"id":"R1391","pred":"arg1Of","subj":"T1981","obj":"T1980"},{"id":"R1392","pred":"arg1Of","subj":"T1981","obj":"T1982"},{"id":"R1393","pred":"arg1Of","subj":"T1981","obj":"T1986"},{"id":"R1394","pred":"arg1Of","subj":"T1981","obj":"T1987"},{"id":"R1395","pred":"arg2Of","subj":"T1984","obj":"T1982"},{"id":"R1396","pred":"arg1Of","subj":"T1984","obj":"T1983"},{"id":"R1397","pred":"arg1Of","subj":"T1986","obj":"T1985"},{"id":"R1398","pred":"arg1Of","subj":"T1989","obj":"T1988"},{"id":"R1399","pred":"arg1Of","subj":"T1989","obj":"T1990"},{"id":"R1400","pred":"arg2Of","subj":"T1990","obj":"T1987"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"y sequences in the region between nucleotides −189 and −539 of the murine SerpinB2 promoter, and is critically dependent upon a C/EBP binding site at −203/−195. C/EBP-β directly bound to this site in vivo and its deficiency abrogated constitut"}

    bionlp-st-ge-2016-coref

    {"project":"bionlp-st-ge-2016-coref","denotations":[{"id":"T1298","span":{"begin":187,"end":196},"obj":"Antecedent"},{"id":"T1297","span":{"begin":209,"end":212},"obj":"Anaphor"},{"id":"T1296","span":{"begin":128,"end":146},"obj":"Antecedent"},{"id":"T1295","span":{"begin":187,"end":196},"obj":"Anaphor"}],"relations":[{"id":"R823","pred":"boundBy","subj":"T1295","obj":"T1296"},{"id":"R824","pred":"boundBy","subj":"T1297","obj":"T1295"}],"namespaces":[{"prefix":"_base","uri":"https://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"y sequences in the region between nucleotides −189 and −539 of the murine SerpinB2 promoter, and is critically dependent upon a C/EBP binding site at −203/−195. C/EBP-β directly bound to this site in vivo and its deficiency abrogated constitut"}

    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T1319","span":{"begin":161,"end":168},"obj":"Protein"},{"id":"T1318","span":{"begin":74,"end":82},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"y sequences in the region between nucleotides −189 and −539 of the murine SerpinB2 promoter, and is critically dependent upon a C/EBP binding site at −203/−195. C/EBP-β directly bound to this site in vivo and its deficiency abrogated constitut"}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T2116","span":{"begin":74,"end":82},"obj":"http://www.uniprot.org/uniprot/P05120"},{"id":"T2131","span":{"begin":161,"end":168},"obj":"http://www.uniprot.org/uniprot/P28033"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"y sequences in the region between nucleotides −189 and −539 of the murine SerpinB2 promoter, and is critically dependent upon a C/EBP binding site at −203/−195. C/EBP-β directly bound to this site in vivo and its deficiency abrogated constitut"}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T1380","span":{"begin":134,"end":141},"obj":"http://purl.obolibrary.org/obo/GO_0005488"}],"text":"y sequences in the region between nucleotides −189 and −539 of the murine SerpinB2 promoter, and is critically dependent upon a C/EBP binding site at −203/−195. C/EBP-β directly bound to this site in vivo and its deficiency abrogated constitut"}

    simple1

    {"project":"simple1","denotations":[{"id":"T1417","span":{"begin":161,"end":168},"obj":"Protein"},{"id":"T1416","span":{"begin":74,"end":82},"obj":"Protein"}],"text":"y sequences in the region between nucleotides −189 and −539 of the murine SerpinB2 promoter, and is critically dependent upon a C/EBP binding site at −203/−195. C/EBP-β directly bound to this site in vivo and its deficiency abrogated constitut"}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T2075","span":{"begin":161,"end":168},"obj":"Protein"},{"id":"T2074","span":{"begin":74,"end":82},"obj":"Protein"},{"id":"T2100","span":{"begin":213,"end":223},"obj":"Negative_regulation"},{"id":"T2099","span":{"begin":224,"end":233},"obj":"Negative_regulation"},{"id":"T2096","span":{"begin":178,"end":183},"obj":"Binding"},{"id":"T2093","span":{"begin":111,"end":120},"obj":"Positive_regulation"}],"relations":[{"id":"R1461","pred":"themeOf","subj":"T2075","obj":"T2100"},{"id":"R1462","pred":"themeOf","subj":"T2075","obj":"T2096"}],"text":"y sequences in the region between nucleotides −189 and −539 of the murine SerpinB2 promoter, and is critically dependent upon a C/EBP binding site at −203/−195. C/EBP-β directly bound to this site in vivo and its deficiency abrogated constitut"}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T2234","span":{"begin":161,"end":168},"obj":"Protein"},{"id":"T2233","span":{"begin":74,"end":82},"obj":"Protein"},{"id":"T2257","span":{"begin":213,"end":223},"obj":"Negative_regulation"},{"id":"T2256","span":{"begin":224,"end":233},"obj":"Negative_regulation"},{"id":"T2254","span":{"begin":178,"end":183},"obj":"Binding"},{"id":"T2253","span":{"begin":111,"end":120},"obj":"Positive_regulation"}],"relations":[{"id":"R1520","pred":"themeOf","subj":"T2234","obj":"T2257"},{"id":"R1522","pred":"causeOf","subj":"T2234","obj":"T2256"},{"id":"R1523","pred":"causeOf","subj":"T2234","obj":"T2256"},{"id":"R1524","pred":"themeOf","subj":"T2234","obj":"T2254"},{"id":"R1528","pred":"causeOf","subj":"T2254","obj":"T2256"},{"id":"R1529","pred":"causeOf","subj":"T2254","obj":"T2256"},{"id":"R1535","pred":"causeOf","subj":"T2257","obj":"T2256"},{"id":"R1536","pred":"causeOf","subj":"T2257","obj":"T2256"}],"text":"y sequences in the region between nucleotides −189 and −539 of the murine SerpinB2 promoter, and is critically dependent upon a C/EBP binding site at −203/−195. C/EBP-β directly bound to this site in vivo and its deficiency abrogated constitut"}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T2174","span":{"begin":178,"end":183},"obj":"Binding"},{"id":"T2173","span":{"begin":134,"end":141},"obj":"Binding"},{"id":"T2153","span":{"begin":161,"end":168},"obj":"Protein"},{"id":"T2152","span":{"begin":74,"end":82},"obj":"Protein"}],"relations":[{"id":"R1488","pred":"themeOf","subj":"T2153","obj":"T2174"}],"text":"y sequences in the region between nucleotides −189 and −539 of the murine SerpinB2 promoter, and is critically dependent upon a C/EBP binding site at −203/−195. C/EBP-β directly bound to this site in vivo and its deficiency abrogated constitut"}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T2480","span":{"begin":121,"end":146},"obj":"Binding"},{"id":"T2468","span":{"begin":161,"end":204},"obj":"Binding"},{"id":"T2434","span":{"begin":63,"end":92},"obj":"Entity"},{"id":"T2399","span":{"begin":128,"end":133},"obj":"Protein"},{"id":"T2382","span":{"begin":161,"end":168},"obj":"Protein"},{"id":"T2376","span":{"begin":74,"end":82},"obj":"Protein"},{"id":"T2374","span":{"begin":34,"end":45},"obj":"Entity"},{"id":"T2371","span":{"begin":121,"end":146},"obj":"Entity"}],"relations":[{"id":"R1601","pred":"themeOf","subj":"T2371","obj":"T2480"},{"id":"R1604","pred":"themeOf","subj":"T2382","obj":"T2468"},{"id":"R1632","pred":"partOf","subj":"T2434","obj":"T2376"}],"text":"y sequences in the region between nucleotides −189 and −539 of the murine SerpinB2 promoter, and is critically dependent upon a C/EBP binding site at −203/−195. C/EBP-β directly bound to this site in vivo and its deficiency abrogated constitut"}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T2311","span":{"begin":178,"end":183},"obj":"Binding"},{"id":"T2310","span":{"begin":161,"end":168},"obj":"Protein"},{"id":"T2309","span":{"begin":111,"end":120},"obj":"Negative_regulation"},{"id":"T2308","span":{"begin":34,"end":45},"obj":"Gene_expression"},{"id":"T2305","span":{"begin":128,"end":133},"obj":"Protein"},{"id":"T2304","span":{"begin":67,"end":91},"obj":"Protein"}],"relations":[{"id":"R1575","pred":"themeOf","subj":"T2304","obj":"T2308"},{"id":"R1582","pred":"themeOf","subj":"T2310","obj":"T2311"}],"text":"y sequences in the region between nucleotides −189 and −539 of the murine SerpinB2 promoter, and is critically dependent upon a C/EBP binding site at −203/−195. C/EBP-β directly bound to this site in vivo and its deficiency abrogated constitut"}

    testone

    {"project":"testone","denotations":[{"id":"T1131","span":{"begin":224,"end":233},"obj":"Negative_regulation"},{"id":"T1130","span":{"begin":213,"end":223},"obj":"Negative_regulation"},{"id":"T1129","span":{"begin":178,"end":183},"obj":"Binding"},{"id":"T1114","span":{"begin":161,"end":168},"obj":"Protein"},{"id":"T1113","span":{"begin":74,"end":82},"obj":"Protein"}],"relations":[{"id":"R751","pred":"themeOf","subj":"T1114","obj":"T1129"}],"text":"y sequences in the region between nucleotides −189 and −539 of the murine SerpinB2 promoter, and is critically dependent upon a C/EBP binding site at −203/−195. C/EBP-β directly bound to this site in vivo and its deficiency abrogated constitut"}

    test3

    {"project":"test3","denotations":[{"id":"T1190","span":{"begin":224,"end":233},"obj":"Negative_regulation"},{"id":"T1189","span":{"begin":213,"end":223},"obj":"Negative_regulation"},{"id":"T1188","span":{"begin":178,"end":183},"obj":"Binding"},{"id":"T1187","span":{"begin":161,"end":168},"obj":"Protein"},{"id":"T1186","span":{"begin":74,"end":82},"obj":"Protein"},{"id":"T1155","span":{"begin":161,"end":168},"obj":"Protein"},{"id":"T1154","span":{"begin":74,"end":82},"obj":"Protein"}],"relations":[{"id":"R763","pred":"themeOf","subj":"T1187","obj":"T1188"}],"text":"y sequences in the region between nucleotides −189 and −539 of the murine SerpinB2 promoter, and is critically dependent upon a C/EBP binding site at −203/−195. C/EBP-β directly bound to this site in vivo and its deficiency abrogated constitut"}