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PMC:3589482 / 4840-5083 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3078 224-233 VBD denotes abrogated
T3077 213-223 NN denotes deficiency
T3076 209-212 PRP$ denotes its
T3075 205-208 CC denotes and
T3074 200-204 NN denotes vivo
T3073 197-199 IN denotes in
T3072 192-196 NN denotes site
T3071 187-191 DT denotes this
T3070 184-186 TO denotes to
T3069 178-183 VBN denotes bound
T3068 169-177 RB denotes directly
T3067 167-168 NN denotes β
T3066 166-167 : denotes -
T3065 161-166 SYM denotes C/EBP
T3064 159-160 . denotes .
T3063 156-159 CD denotes 195
T3062 155-156 NN denotes −
T3061 154-155 NN denotes /
T3060 151-154 CD denotes 203
T3059 150-151 CD denotes −
T3058 147-149 IN denotes at
T3057 142-146 NN denotes site
T3056 134-141 JJ denotes binding
T3055 128-133 NNP denotes C/EBP
T3054 126-127 DT denotes a
T3053 121-125 IN denotes upon
T3052 111-120 JJ denotes dependent
T3051 100-110 RB denotes critically
T3050 97-99 VBZ denotes is
T3049 93-96 CC denotes and
T3048 91-92 , denotes ,
T3047 83-91 NN denotes promoter
T3046 74-82 NNP denotes SerpinB2
T3045 67-73 NN denotes murine
T3044 63-66 DT denotes the
T3043 60-62 IN denotes of
T3042 56-59 CD denotes 539
T3041 55-56 CD denotes −
T3040 51-54 CC denotes and
T3039 47-50 CD denotes 189
T3038 46-47 VBP denotes −
T3037 34-45 NNS denotes nucleotides
T3036 26-33 IN denotes between
T3035 19-25 NN denotes region
T3034 15-18 DT denotes the
T3033 12-14 IN denotes in
T3032 2-11 NNS denotes sequences
R2162 T3033 T3032 prep in,sequences
R2167 T3034 T3035 det the,region
R2172 T3035 T3033 pobj region,in
R2179 T3037 T3036 pobj nucleotides,between
R2181 T3039 T3038 dobj 189,−
R2182 T3040 T3039 cc and,189
R2184 T3041 T3039 conj −,189
R2185 T3042 T3039 conj 539,189
R2186 T3043 T3042 prep of,539
R2187 T3044 T3047 det the,promoter
R2188 T3045 T3047 compound murine,promoter
R2189 T3046 T3047 compound SerpinB2,promoter
R2190 T3047 T3043 pobj promoter,of
R2194 T3051 T3052 advmod critically,dependent
R2195 T3052 T3050 acomp dependent,is
R2196 T3053 T3052 prep upon,dependent
R2197 T3054 T3057 det a,site
R2198 T3055 T3057 nmod C/EBP,site
R2199 T3056 T3057 amod binding,site
R2200 T3057 T3053 pobj site,upon
R2201 T3058 T3050 prep at,is
R2202 T3059 T3063 nummod −,195
R2203 T3060 T3062 nummod 203,−
R2204 T3061 T3062 compound /,−
R2205 T3062 T3063 nummod −,195
R2206 T3063 T3058 pobj 195,at
R2208 T3065 T3067 punct C/EBP,β
R2209 T3066 T3067 punct -,β
R2210 T3067 T3078 nsubj β,abrogated
R2211 T3068 T3069 advmod directly,bound
R2212 T3069 T3067 acl bound,β
R2213 T3070 T3069 prep to,bound
R2214 T3071 T3072 det this,site
R2215 T3072 T3070 pobj site,to
R2216 T3073 T3072 prep in,site
R2217 T3074 T3073 pobj vivo,in
R2218 T3075 T3074 cc and,vivo
R2219 T3076 T3077 poss its,deficiency
R2220 T3077 T3074 conj deficiency,vivo
R2221 T3078 T3078 ROOT abrogated,abrogated

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1980 169-177 RB denotes directly
T1990 224-233 VB denotes abrogated
T1989 213-223 NN denotes deficiency
T1988 209-212 PRP-DOLLAR- denotes its
T1987 205-208 CC denotes and
T1986 200-204 FW denotes vivo
T1985 197-199 FW denotes in
T1984 192-196 NN denotes site
T1983 187-191 DT denotes this
T1982 184-186 TO denotes to
T1981 178-183 VB denotes bound
T1979 161-168 NN denotes C/EBP-β
T1978 150-159 CD denotes −203/−195
T1977 147-149 IN denotes at
T1976 142-146 NN denotes site
T1975 134-141 NN denotes binding
T1974 128-133 NN denotes C/EBP
T1973 126-127 DT denotes a
T1972 121-125 IN denotes upon
T1971 111-120 JJ denotes dependent
T1970 100-110 RB denotes critically
T1969 97-99 VB denotes is
T1968 93-96 CC denotes and
T1967 91-92 -COMMA- denotes ,
T1966 83-91 NN denotes promoter
T1965 74-82 NN denotes SerpinB2
T1964 67-73 JJ denotes murine
T1963 63-66 DT denotes the
T1962 60-62 IN denotes of
T1961 55-59 CD denotes −539
T1960 51-54 CC denotes and
T1959 46-50 CD denotes −189
T1958 34-45 NN denotes nucleotides
T1957 26-33 IN denotes between
T1956 19-25 NN denotes region
T1955 15-18 DT denotes the
T1954 12-14 IN denotes in
T1953 2-11 NN denotes sequences
R1364 T1953 T1954 arg1Of sequences,in
R1365 T1956 T1954 arg2Of region,in
R1366 T1956 T1955 arg1Of region,the
R1367 T1956 T1957 arg1Of region,between
R1368 T1959 T1960 arg1Of −189,and
R1369 T1960 T1957 arg2Of and,between
R1370 T1960 T1958 arg1Of and,nucleotides
R1371 T1960 T1962 arg1Of and,of
R1372 T1961 T1960 arg2Of −539,and
R1373 T1966 T1962 arg2Of promoter,of
R1374 T1966 T1963 arg1Of promoter,the
R1375 T1966 T1964 arg1Of promoter,murine
R1376 T1966 T1965 arg1Of promoter,SerpinB2
R1379 T1968 T1967 arg1Of and,","
R1380 T1969 T1968 arg2Of is,and
R1381 T1969 T1970 arg1Of is,critically
R1382 T1971 T1969 arg2Of dependent,is
R1383 T1971 T1972 arg1Of dependent,upon
R1384 T1976 T1972 arg2Of site,upon
R1385 T1976 T1973 arg1Of site,a
R1386 T1976 T1974 arg1Of site,C/EBP
R1387 T1976 T1975 arg1Of site,binding
R1388 T1976 T1977 arg1Of site,at
R1389 T1978 T1977 arg2Of −203/−195,at
R1390 T1979 T1981 arg1Of C/EBP-β,bound
R1391 T1981 T1980 arg1Of bound,directly
R1392 T1981 T1982 arg1Of bound,to
R1393 T1981 T1986 arg1Of bound,vivo
R1394 T1981 T1987 arg1Of bound,and
R1395 T1984 T1982 arg2Of site,to
R1396 T1984 T1983 arg1Of site,this
R1397 T1986 T1985 arg1Of vivo,in
R1398 T1989 T1988 arg1Of deficiency,its
R1399 T1989 T1990 arg1Of deficiency,abrogated
R1400 T1990 T1987 arg2Of abrogated,and

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T1298 187-196 Antecedent denotes this site
T1297 209-212 Anaphor denotes its
T1296 128-146 Antecedent denotes C/EBP binding site
T1295 187-196 Anaphor denotes this site
R823 T1295 T1296 boundBy this site,C/EBP binding site
R824 T1297 T1295 boundBy its,this site

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1319 161-168 Protein denotes C/EBP-β
T1318 74-82 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2116 74-82 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T2131 161-168 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β

GO-MF

Id Subject Object Predicate Lexical cue
T1380 134-141 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

simple1

Id Subject Object Predicate Lexical cue
T1417 161-168 Protein denotes C/EBP-β
T1416 74-82 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2075 161-168 Protein denotes C/EBP-β
T2074 74-82 Protein denotes SerpinB2
T2100 213-223 Negative_regulation denotes deficiency
T2099 224-233 Negative_regulation denotes abrogated
T2096 178-183 Binding denotes bound
T2093 111-120 Positive_regulation denotes dependent
R1461 T2075 T2100 themeOf C/EBP-β,deficiency
R1462 T2075 T2096 themeOf C/EBP-β,bound

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2234 161-168 Protein denotes C/EBP-β
T2233 74-82 Protein denotes SerpinB2
T2257 213-223 Negative_regulation denotes deficiency
T2256 224-233 Negative_regulation denotes abrogated
T2254 178-183 Binding denotes bound
T2253 111-120 Positive_regulation denotes dependent
R1520 T2234 T2257 themeOf C/EBP-β,deficiency
R1522 T2234 T2256 causeOf C/EBP-β,abrogated
R1523 T2234 T2256 causeOf C/EBP-β,abrogated
R1524 T2234 T2254 themeOf C/EBP-β,bound
R1528 T2254 T2256 causeOf bound,abrogated
R1529 T2254 T2256 causeOf bound,abrogated
R1535 T2257 T2256 causeOf deficiency,abrogated
R1536 T2257 T2256 causeOf deficiency,abrogated

DLUT931

Id Subject Object Predicate Lexical cue
T2174 178-183 Binding denotes bound
T2173 134-141 Binding denotes binding
T2153 161-168 Protein denotes C/EBP-β
T2152 74-82 Protein denotes SerpinB2
R1488 T2153 T2174 themeOf C/EBP-β,bound

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2480 121-146 Binding denotes upon a C/EBP binding site
T2468 161-204 Binding denotes C/EBP-β directly bound to this site in vivo
T2434 63-92 Entity denotes the murine SerpinB2 promoter,
T2399 128-133 Protein denotes C/EBP
T2382 161-168 Protein denotes C/EBP-β
T2376 74-82 Protein denotes SerpinB2
T2374 34-45 Entity denotes nucleotides
T2371 121-146 Entity denotes upon a C/EBP binding site
R1601 T2371 T2480 themeOf upon a C/EBP binding site,upon a C/EBP binding site
R1604 T2382 T2468 themeOf C/EBP-β,C/EBP-β directly bound to this site in vivo
R1632 T2434 T2376 partOf "the murine SerpinB2 promoter,",SerpinB2

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T2311 178-183 Binding denotes bound
T2310 161-168 Protein denotes C/EBP-β
T2309 111-120 Negative_regulation denotes dependent
T2308 34-45 Gene_expression denotes nucleotides
T2305 128-133 Protein denotes C/EBP
T2304 67-91 Protein denotes murine SerpinB2 promoter
R1575 T2304 T2308 themeOf murine SerpinB2 promoter,nucleotides
R1582 T2310 T2311 themeOf C/EBP-β,bound

testone

Id Subject Object Predicate Lexical cue
T1131 224-233 Negative_regulation denotes abrogated
T1130 213-223 Negative_regulation denotes deficiency
T1129 178-183 Binding denotes bound
T1114 161-168 Protein denotes C/EBP-β
T1113 74-82 Protein denotes SerpinB2
R751 T1114 T1129 themeOf C/EBP-β,bound

test3

Id Subject Object Predicate Lexical cue
T1190 224-233 Negative_regulation denotes abrogated
T1189 213-223 Negative_regulation denotes deficiency
T1188 178-183 Binding denotes bound
T1187 161-168 Protein denotes C/EBP-β
T1186 74-82 Protein denotes SerpinB2
T1155 161-168 Protein denotes C/EBP-β
T1154 74-82 Protein denotes SerpinB2
R763 T1187 T1188 themeOf C/EBP-β,bound