> top > docs > PMC:3589482 > spans > 46816-47251 > annotations

PMC:3589482 / 46816-47251 JSONTXT

Annnotations TAB JSON ListView MergeView

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T22241 56-59 CD denotes 195
T22270 236-243 JJ denotes unknown
T22269 225-235 RB denotes previously
T22268 223-224 DT denotes a
T22267 215-222 VB denotes uncover
T22266 212-214 TO denotes to
T22265 207-211 JJ denotes able
T22264 202-206 VBD denotes were
T22263 199-201 PRP denotes we
T22262 197-198 , denotes ,
T22261 186-197 RB denotes Importantly
T22260 184-185 . denotes .
T22259 174-184 NN denotes expression
T22258 169-173 NN denotes gene
T22257 160-168 JJ denotes SerpinB2
T22256 148-159 JJ denotes LPS-induced
T22255 144-147 CC denotes and
T22254 131-143 JJ denotes constitutive
T22253 126-130 DT denotes both
T22252 118-125 VB denotes support
T22251 115-117 TO denotes to
T22250 105-114 JJ denotes necessary
T22249 102-104 VBZ denotes is
T22248 93-101 NN denotes promoter
T22247 84-92 JJ denotes proximal
T22246 75-83 NNP denotes SerpinB2
T22245 68-74 NN denotes murine
T22244 64-67 DT denotes the
T22243 61-63 IN denotes in
T22242 59-60 -RRB- denotes )
T22240 55-56 NN denotes −
T22239 54-55 CD denotes /
T22238 51-54 CD denotes 203
T22237 50-51 FW denotes −
T22236 49-50 -LRB- denotes (
T22235 44-48 NN denotes site
T22234 38-43 NNP denotes C/EBP
T22233 34-37 DT denotes the
T22232 29-33 IN denotes that
T22231 24-28 VBP denotes show
T22230 16-23 NNS denotes studies
T22229 12-15 PRP$ denotes our
T22228 10-11 , denotes ,
T22227 3-10 NN denotes summary
T22226 0-2 IN denotes In
T22298 434-435 . denotes .
T22297 424-434 NN denotes expression
T22296 419-423 NN denotes gene
T22295 410-418 NNP denotes SerpinB2
T22294 386-409 JJ denotes inflammation-associated
T22293 383-385 IN denotes of
T22292 372-382 NN denotes regulation
T22291 368-371 DT denotes the
T22290 363-367 IN denotes into
T22289 355-362 NN denotes insight
T22288 351-354 JJ denotes new
T22287 343-350 VBP denotes provide
T22286 338-342 NNS denotes data
T22285 332-337 DT denotes these
T22284 323-331 RB denotes together
T22283 317-322 VBN denotes Taken
T22282 315-316 . denotes .
T22281 307-315 NN denotes activity
T22280 298-306 NN denotes promoter
T22279 289-297 JJ denotes SerpinB2
T22278 278-288 VBG denotes regulating
T22277 267-277 RB denotes negatively
T22276 264-266 IN denotes in
T22275 259-263 NN denotes βS64
T22274 258-259 : denotes -
T22273 253-258 NNP denotes C/EBP
T22272 249-252 IN denotes for
T22271 244-248 NN denotes role
R16077 T22226 T22231 prep In,show
R16078 T22227 T22226 pobj summary,In
R16080 T22228 T22231 punct ",",show
R16081 T22229 T22230 poss our,studies
R16083 T22230 T22231 nsubj studies,show
R16084 T22231 T22231 ROOT show,show
R16085 T22232 T22231 dobj that,show
R16087 T22233 T22235 det the,site
R16088 T22234 T22235 compound C/EBP,site
R16089 T22235 T22232 nsubj site,that
R16091 T22236 T22249 punct (,is
R16092 T22237 T22239 nummod −,/
R16094 T22238 T22239 nummod 203,/
R16095 T22239 T22249 nsubj /,is
R16096 T22240 T22249 nsubj −,is
R16100 T22241 T22240 nummod 195,−
R16101 T22242 T22240 punct ),−
R16102 T22243 T22240 prep in,−
R16103 T22244 T22248 det the,promoter
R16105 T22245 T22248 amod murine,promoter
R16106 T22246 T22248 nmod SerpinB2,promoter
R16107 T22247 T22248 amod proximal,promoter
R16109 T22248 T22243 pobj promoter,in
R16110 T22249 T22235 parataxis is,site
R16111 T22250 T22249 acomp necessary,is
R16112 T22251 T22252 aux to,support
R16113 T22252 T22249 xcomp support,is
R16114 T22253 T22254 preconj both,constitutive
R16115 T22254 T22259 nmod constitutive,expression
R16116 T22255 T22254 cc and,constitutive
R16117 T22256 T22254 conj LPS-induced,constitutive
R16118 T22257 T22259 amod SerpinB2,expression
R16119 T22258 T22259 compound gene,expression
R16120 T22259 T22252 dobj expression,support
R16121 T22260 T22249 punct .,is
R16122 T22261 T22264 advmod Importantly,were
R16123 T22262 T22264 punct ",",were
R16124 T22263 T22264 nsubj we,were
R16125 T22264 T22264 ROOT were,were
R16126 T22265 T22264 acomp able,were
R16127 T22266 T22267 aux to,uncover
R16128 T22267 T22265 xcomp uncover,able
R16129 T22268 T22271 det a,role
R16130 T22269 T22270 advmod previously,unknown
R16131 T22270 T22271 amod unknown,role
R16132 T22271 T22267 dobj role,uncover
R16133 T22272 T22271 prep for,role
R16134 T22273 T22275 compound C/EBP,βS64
R16135 T22274 T22275 punct -,βS64
R16136 T22275 T22272 pobj βS64,for
R16137 T22276 T22275 prep in,βS64
R16138 T22277 T22278 advmod negatively,regulating
R16139 T22278 T22276 pcomp regulating,in
R16140 T22279 T22281 amod SerpinB2,activity
R16141 T22280 T22281 compound promoter,activity
R16142 T22281 T22278 dobj activity,regulating
R16143 T22282 T22264 punct .,were
R16144 T22283 T22287 advcl Taken,provide
R16145 T22284 T22283 advmod together,Taken
R16146 T22285 T22286 det these,data
R16147 T22286 T22287 nsubj data,provide
R16148 T22287 T22287 ROOT provide,provide
R16149 T22288 T22289 amod new,insight
R16150 T22289 T22287 dobj insight,provide
R16151 T22290 T22289 prep into,insight
R16152 T22291 T22292 det the,regulation
R16153 T22292 T22290 pobj regulation,into
R16154 T22293 T22292 prep of,regulation
R16155 T22294 T22297 amod inflammation-associated,expression
R16156 T22295 T22297 compound SerpinB2,expression
R16157 T22296 T22297 compound gene,expression
R16158 T22297 T22293 pobj expression,of
R16159 T22298 T22287 punct .,provide

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T19990 424-434 NN denotes expression
T19989 419-423 NN denotes gene
T19988 410-418 NN denotes SerpinB2
T19987 386-409 JJ denotes inflammation-associated
T19986 383-385 IN denotes of
T19985 372-382 NN denotes regulation
T19984 368-371 DT denotes the
T19983 363-367 IN denotes into
T19982 355-362 NN denotes insight
T19981 351-354 JJ denotes new
T19980 343-350 VB denotes provide
T19979 338-342 NN denotes data
T19978 332-337 DT denotes these
T19977 323-331 RB denotes together
T19976 317-322 VB denotes Taken
T19975 307-315 NN denotes activity
T19974 298-306 NN denotes promoter
T19973 289-297 NN denotes SerpinB2
T19972 278-288 VB denotes regulating
T19971 267-277 RB denotes negatively
T19970 264-266 IN denotes in
T19969 253-263 NN denotes C/EBP-βS64
T19968 249-252 IN denotes for
T19967 244-248 NN denotes role
T19966 236-243 JJ denotes unknown
T19965 225-235 RB denotes previously
T19964 223-224 DT denotes a
T19963 215-222 VB denotes uncover
T19962 212-214 TO denotes to
T19961 207-211 JJ denotes able
T19960 202-206 VB denotes were
T19959 199-201 PRP denotes we
T19958 197-198 -COMMA- denotes ,
T19957 186-197 RB denotes Importantly
T19956 174-184 NN denotes expression
T19955 169-173 NN denotes gene
T19954 160-168 NN denotes SerpinB2
T19953 148-159 JJ denotes LPS-induced
T19952 144-147 CC denotes and
T19951 131-143 JJ denotes constitutive
T19950 126-130 CC denotes both
T19949 118-125 VB denotes support
T19948 115-117 TO denotes to
T19947 105-114 JJ denotes necessary
T19946 102-104 VB denotes is
T19945 93-101 NN denotes promoter
T19944 84-92 JJ denotes proximal
T19943 75-83 NN denotes SerpinB2
T19942 68-74 JJ denotes murine
T19941 64-67 DT denotes the
T19940 61-63 IN denotes in
T19939 59-60 -RRB- denotes )
T19938 50-59 CD denotes −203/−195
T19937 49-50 -LRB- denotes (
T19936 44-48 NN denotes site
T19935 38-43 NN denotes C/EBP
T19934 34-37 DT denotes the
T19933 29-33 IN denotes that
T19932 24-28 VB denotes show
T19931 16-23 NN denotes studies
T19930 12-15 PRP-DOLLAR- denotes our
T19929 10-11 -COMMA- denotes ,
T19928 3-10 NN denotes summary
T19927 0-2 IN denotes In
R14437 T19928 T19927 arg2Of summary,In
R14438 T19931 T19930 arg1Of studies,our
R14439 T19931 T19932 arg1Of studies,show
R14440 T19932 T19927 arg1Of show,In
R14441 T19932 T19929 arg1Of show,","
R14442 T19936 T19934 arg1Of site,the
R14443 T19936 T19935 arg1Of site,C/EBP
R14444 T19936 T19937 arg1Of site,(
R14445 T19936 T19940 arg1Of site,in
R14446 T19936 T19946 arg1Of site,is
R14447 T19936 T19947 arg1Of site,necessary
R14448 T19938 T19937 arg2Of −203/−195,(
R14449 T19939 T19937 arg3Of ),(
R14450 T19945 T19940 arg2Of promoter,in
R14451 T19945 T19941 arg1Of promoter,the
R14452 T19945 T19942 arg1Of promoter,murine
R14453 T19945 T19943 arg1Of promoter,SerpinB2
R14454 T19945 T19944 arg1Of promoter,proximal
R14455 T19946 T19932 arg2Of is,show
R14456 T19946 T19933 arg1Of is,that
R14457 T19947 T19946 arg2Of necessary,is
R14458 T19949 T19947 arg2Of support,necessary
R14459 T19949 T19948 arg1Of support,to
R14460 T19951 T19952 arg1Of constitutive,and
R14461 T19953 T19952 arg2Of LPS-induced,and
R14462 T19956 T19949 arg2Of expression,support
R14463 T19956 T19950 arg1Of expression,both
R14464 T19956 T19951 arg1Of expression,constitutive
R14465 T19956 T19953 arg1Of expression,LPS-induced
R14466 T19956 T19954 arg1Of expression,SerpinB2
R14467 T19956 T19955 arg1Of expression,gene
R14468 T19959 T19960 arg1Of we,were
R14469 T19959 T19961 arg1Of we,able
R14470 T19959 T19963 arg1Of we,uncover
R14471 T19960 T19957 arg1Of were,Importantly
R14472 T19960 T19958 arg1Of were,","
R14473 T19961 T19960 arg2Of able,were
R14474 T19963 T19961 arg2Of uncover,able
R14475 T19963 T19962 arg1Of uncover,to
R14476 T19966 T19965 arg1Of unknown,previously
R14477 T19967 T19963 arg2Of role,uncover
R14478 T19967 T19964 arg1Of role,a
R14479 T19967 T19966 arg1Of role,unknown
R14480 T19967 T19968 arg1Of role,for
R14481 T19967 T19970 arg1Of role,in
R14482 T19969 T19968 arg2Of C/EBP-βS64,for
R14483 T19972 T19971 arg1Of regulating,negatively
R14484 T19975 T19970 arg2Of activity,in
R14485 T19975 T19972 arg1Of activity,regulating
R14486 T19975 T19973 arg1Of activity,SerpinB2
R14487 T19975 T19974 arg1Of activity,promoter
R14488 T19976 T19977 arg1Of Taken,together
R14489 T19979 T19978 arg1Of data,these
R14490 T19979 T19980 arg1Of data,provide
R14491 T19980 T19976 modOf provide,Taken
R14492 T19982 T19980 arg2Of insight,provide
R14493 T19982 T19981 arg1Of insight,new
R14494 T19982 T19983 arg1Of insight,into
R14495 T19985 T19983 arg2Of regulation,into
R14496 T19985 T19984 arg1Of regulation,the
R14497 T19985 T19986 arg1Of regulation,of
R14498 T19990 T19986 arg2Of expression,of
R14499 T19990 T19987 arg1Of expression,inflammation-associated
R14500 T19990 T19988 arg1Of expression,SerpinB2
R14501 T19990 T19989 arg1Of expression,gene

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T18787 410-418 Protein denotes SerpinB2
T18786 289-297 Protein denotes SerpinB2
T18785 160-168 Protein denotes SerpinB2
T18784 75-83 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T20241 289-297 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T20240 160-168 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T20239 75-83 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T18829 372-382 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T18824 386-398 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T18818 419-434 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T18817 169-184 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression

sentences

Id Subject Object Predicate Lexical cue
T18515 317-435 Sentence denotes Taken together these data provide new insight into the regulation of inflammation-associated SerpinB2 gene expression.
T18514 186-316 Sentence denotes Importantly, we were able to uncover a previously unknown role for C/EBP-βS64 in negatively regulating SerpinB2 promoter activity.
T18513 0-185 Sentence denotes In summary, our studies show that the C/EBP site (−203/−195) in the murine SerpinB2 proximal promoter is necessary to support both constitutive and LPS-induced SerpinB2 gene expression.
T278 0-185 Sentence denotes In summary, our studies show that the C/EBP site (−203/−195) in the murine SerpinB2 proximal promoter is necessary to support both constitutive and LPS-induced SerpinB2 gene expression.
T279 186-316 Sentence denotes Importantly, we were able to uncover a previously unknown role for C/EBP-βS64 in negatively regulating SerpinB2 promoter activity.
T280 317-435 Sentence denotes Taken together these data provide new insight into the regulation of inflammation-associated SerpinB2 gene expression.

simple1

Id Subject Object Predicate Lexical cue
T18924 410-418 Protein denotes SerpinB2
T18923 289-297 Protein denotes SerpinB2
T18922 160-168 Protein denotes SerpinB2
T18921 75-83 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T20207 372-382 Regulation denotes regulation
T20206 424-434 Gene_expression denotes expression
T20205 386-409 Positive_regulation denotes inflammation-associated
T20204 278-288 Regulation denotes regulating
T20203 244-248 Regulation denotes role
T20202 105-114 Positive_regulation denotes necessary
T20201 148-159 Positive_regulation denotes LPS-induced
T20200 174-184 Gene_expression denotes expression
T20132 410-418 Protein denotes SerpinB2
T20131 289-297 Protein denotes SerpinB2
T20130 160-168 Protein denotes SerpinB2
T20129 75-83 Protein denotes SerpinB2
R14569 T20129 T20202 themeOf SerpinB2,necessary
R14570 T20130 T20200 themeOf SerpinB2,expression
R14571 T20131 T20203 themeOf SerpinB2,role
R14572 T20131 T20204 themeOf SerpinB2,regulating
R14573 T20132 T20206 themeOf SerpinB2,expression
R14611 T20200 T20201 themeOf expression,LPS-induced
R14612 T20206 T20207 themeOf expression,regulation
R14613 T20206 T20205 themeOf expression,inflammation-associated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T20643 372-382 Regulation denotes regulation
T20642 386-409 Positive_regulation denotes inflammation-associated
T20641 424-434 Gene_expression denotes expression
T20640 174-184 Gene_expression denotes expression
T20639 148-159 Positive_regulation denotes LPS-induced
T20582 410-418 Protein denotes SerpinB2
T20581 289-297 Protein denotes SerpinB2
T20580 160-168 Protein denotes SerpinB2
T20579 75-83 Protein denotes SerpinB2
R14778 T20580 T20640 themeOf SerpinB2,expression
R14779 T20582 T20641 themeOf SerpinB2,expression
R14801 T20640 T20639 themeOf expression,LPS-induced
R14802 T20641 T20643 themeOf expression,regulation
R14803 T20641 T20642 themeOf expression,inflammation-associated

DLUT931

Id Subject Object Predicate Lexical cue
T20426 372-382 Regulation denotes regulation
T20425 386-409 Positive_regulation denotes inflammation-associated
T20424 424-434 Gene_expression denotes expression
T20423 244-248 Regulation denotes role
T20422 278-288 Regulation denotes regulating
T20421 148-159 Positive_regulation denotes LPS-induced
T20420 131-143 Positive_regulation denotes constitutive
T20419 174-184 Gene_expression denotes expression
T20356 410-418 Protein denotes SerpinB2
T20355 289-297 Protein denotes SerpinB2
T20354 160-168 Protein denotes SerpinB2
T20353 75-83 Protein denotes SerpinB2
R14664 T20354 T20419 themeOf SerpinB2,expression
R14665 T20355 T20422 themeOf SerpinB2,regulating
R14666 T20356 T20424 themeOf SerpinB2,expression
R14699 T20419 T20420 themeOf expression,constitutive
R14700 T20419 T20421 themeOf expression,LPS-induced
R14701 T20422 T20423 themeOf regulating,role
R14702 T20424 T20425 themeOf expression,inflammation-associated
R14703 T20425 T20426 themeOf inflammation-associated,regulation

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T21108 368-434 Regulation denotes the regulation of inflammation-associated SerpinB2 gene expression
T21107 267-315 Regulation denotes negatively regulating SerpinB2 promoter activity
T21104 160-184 Gene_expression denotes SerpinB2 gene expression
T21100 383-434 Gene_expression denotes of inflammation-associated SerpinB2 gene expression
T21075 410-418 Protein denotes SerpinB2
T21063 38-43 Protein denotes C/EBP
T21053 148-159 Entity denotes LPS-induced
T21042 34-48 Entity denotes the C/EBP site
T20966 160-168 Protein denotes SerpinB2
T20961 160-184 Protein denotes SerpinB2 gene expression
T20960 289-306 Entity denotes SerpinB2 promoter
T20945 289-297 Protein denotes SerpinB2
T20914 75-83 Protein denotes SerpinB2
T20910 75-101 Entity denotes SerpinB2 proximal promoter
R14948 T20966 T21104 themeOf SerpinB2,SerpinB2 gene expression
R14971 T21075 T21100 themeOf SerpinB2,of inflammation-associated SerpinB2 gene expression
R14977 T21100 T21108 themeOf of inflammation-associated SerpinB2 gene expression,the regulation of inflammation-associated SerpinB2 gene expression

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T20772 289-306 Protein denotes SerpinB2 promoter
T20771 253-263 Protein denotes C/EBP-βS64
T20770 148-159 Positive_regulation denotes LPS-induced
T20769 174-184 Gene_expression denotes expression
T20768 160-173 Protein denotes SerpinB2 gene
T20767 68-101 Protein denotes murine SerpinB2 proximal promoter
T20766 38-48 Protein denotes C/EBP site
R14866 T20768 T20769 themeOf SerpinB2 gene,expression
R14867 T20769 T20770 themeOf expression,LPS-induced

testone

Id Subject Object Predicate Lexical cue
T18281 372-382 Regulation denotes regulation
T18280 152-159 Positive_regulation denotes induced
T18279 105-114 Positive_regulation denotes necessary
T18235 410-418 Protein denotes SerpinB2
T18234 289-297 Protein denotes SerpinB2
T18233 160-168 Protein denotes SerpinB2
T18232 75-83 Protein denotes SerpinB2
R13157 T18280 T18279 themeOf induced,necessary

test3

Id Subject Object Predicate Lexical cue
T18479 410-418 Protein denotes SerpinB2
T18478 289-297 Protein denotes SerpinB2
T18477 278-288 Regulation denotes regulating
T18476 174-184 Gene_expression denotes expression
T18475 160-168 Protein denotes SerpinB2
T18474 152-159 Positive_regulation denotes induced
T18473 75-83 Protein denotes SerpinB2
T18352 410-418 Protein denotes SerpinB2
T18351 289-297 Protein denotes SerpinB2
T18350 160-168 Protein denotes SerpinB2
T18349 75-83 Protein denotes SerpinB2
R13221 T18475 T18476 themeOf SerpinB2,expression
R13222 T18476 T18474 themeOf expression,induced