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PMC:3589482 / 46816-47001
Annnotations
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T22241","span":{"begin":56,"end":59},"obj":"CD"},{"id":"T22260","span":{"begin":184,"end":185},"obj":"."},{"id":"T22259","span":{"begin":174,"end":184},"obj":"NN"},{"id":"T22258","span":{"begin":169,"end":173},"obj":"NN"},{"id":"T22257","span":{"begin":160,"end":168},"obj":"JJ"},{"id":"T22256","span":{"begin":148,"end":159},"obj":"JJ"},{"id":"T22255","span":{"begin":144,"end":147},"obj":"CC"},{"id":"T22254","span":{"begin":131,"end":143},"obj":"JJ"},{"id":"T22253","span":{"begin":126,"end":130},"obj":"DT"},{"id":"T22252","span":{"begin":118,"end":125},"obj":"VB"},{"id":"T22251","span":{"begin":115,"end":117},"obj":"TO"},{"id":"T22250","span":{"begin":105,"end":114},"obj":"JJ"},{"id":"T22249","span":{"begin":102,"end":104},"obj":"VBZ"},{"id":"T22248","span":{"begin":93,"end":101},"obj":"NN"},{"id":"T22247","span":{"begin":84,"end":92},"obj":"JJ"},{"id":"T22246","span":{"begin":75,"end":83},"obj":"NNP"},{"id":"T22245","span":{"begin":68,"end":74},"obj":"NN"},{"id":"T22244","span":{"begin":64,"end":67},"obj":"DT"},{"id":"T22243","span":{"begin":61,"end":63},"obj":"IN"},{"id":"T22242","span":{"begin":59,"end":60},"obj":"-RRB-"},{"id":"T22240","span":{"begin":55,"end":56},"obj":"NN"},{"id":"T22239","span":{"begin":54,"end":55},"obj":"CD"},{"id":"T22238","span":{"begin":51,"end":54},"obj":"CD"},{"id":"T22237","span":{"begin":50,"end":51},"obj":"FW"},{"id":"T22236","span":{"begin":49,"end":50},"obj":"-LRB-"},{"id":"T22235","span":{"begin":44,"end":48},"obj":"NN"},{"id":"T22234","span":{"begin":38,"end":43},"obj":"NNP"},{"id":"T22233","span":{"begin":34,"end":37},"obj":"DT"},{"id":"T22232","span":{"begin":29,"end":33},"obj":"IN"},{"id":"T22231","span":{"begin":24,"end":28},"obj":"VBP"},{"id":"T22230","span":{"begin":16,"end":23},"obj":"NNS"},{"id":"T22229","span":{"begin":12,"end":15},"obj":"PRP$"},{"id":"T22228","span":{"begin":10,"end":11},"obj":","},{"id":"T22227","span":{"begin":3,"end":10},"obj":"NN"},{"id":"T22226","span":{"begin":0,"end":2},"obj":"IN"}],"relations":[{"id":"R16077","pred":"prep","subj":"T22226","obj":"T22231"},{"id":"R16078","pred":"pobj","subj":"T22227","obj":"T22226"},{"id":"R16080","pred":"punct","subj":"T22228","obj":"T22231"},{"id":"R16081","pred":"poss","subj":"T22229","obj":"T22230"},{"id":"R16083","pred":"nsubj","subj":"T22230","obj":"T22231"},{"id":"R16084","pred":"ROOT","subj":"T22231","obj":"T22231"},{"id":"R16085","pred":"dobj","subj":"T22232","obj":"T22231"},{"id":"R16087","pred":"det","subj":"T22233","obj":"T22235"},{"id":"R16088","pred":"compound","subj":"T22234","obj":"T22235"},{"id":"R16089","pred":"nsubj","subj":"T22235","obj":"T22232"},{"id":"R16091","pred":"punct","subj":"T22236","obj":"T22249"},{"id":"R16092","pred":"nummod","subj":"T22237","obj":"T22239"},{"id":"R16094","pred":"nummod","subj":"T22238","obj":"T22239"},{"id":"R16095","pred":"nsubj","subj":"T22239","obj":"T22249"},{"id":"R16096","pred":"nsubj","subj":"T22240","obj":"T22249"},{"id":"R16100","pred":"nummod","subj":"T22241","obj":"T22240"},{"id":"R16101","pred":"punct","subj":"T22242","obj":"T22240"},{"id":"R16102","pred":"prep","subj":"T22243","obj":"T22240"},{"id":"R16103","pred":"det","subj":"T22244","obj":"T22248"},{"id":"R16105","pred":"amod","subj":"T22245","obj":"T22248"},{"id":"R16106","pred":"nmod","subj":"T22246","obj":"T22248"},{"id":"R16107","pred":"amod","subj":"T22247","obj":"T22248"},{"id":"R16109","pred":"pobj","subj":"T22248","obj":"T22243"},{"id":"R16110","pred":"parataxis","subj":"T22249","obj":"T22235"},{"id":"R16111","pred":"acomp","subj":"T22250","obj":"T22249"},{"id":"R16112","pred":"aux","subj":"T22251","obj":"T22252"},{"id":"R16113","pred":"xcomp","subj":"T22252","obj":"T22249"},{"id":"R16114","pred":"preconj","subj":"T22253","obj":"T22254"},{"id":"R16115","pred":"nmod","subj":"T22254","obj":"T22259"},{"id":"R16116","pred":"cc","subj":"T22255","obj":"T22254"},{"id":"R16117","pred":"conj","subj":"T22256","obj":"T22254"},{"id":"R16118","pred":"amod","subj":"T22257","obj":"T22259"},{"id":"R16119","pred":"compound","subj":"T22258","obj":"T22259"},{"id":"R16120","pred":"dobj","subj":"T22259","obj":"T22252"},{"id":"R16121","pred":"punct","subj":"T22260","obj":"T22249"}],"text":"In summary, our studies show that the C/EBP site (−203/−195) in the murine SerpinB2 proximal promoter is necessary to support both constitutive and LPS-induced SerpinB2 gene expression."}
pmc-enju-pas
{"project":"pmc-enju-pas","denotations":[{"id":"T19956","span":{"begin":174,"end":184},"obj":"NN"},{"id":"T19955","span":{"begin":169,"end":173},"obj":"NN"},{"id":"T19954","span":{"begin":160,"end":168},"obj":"NN"},{"id":"T19953","span":{"begin":148,"end":159},"obj":"JJ"},{"id":"T19952","span":{"begin":144,"end":147},"obj":"CC"},{"id":"T19951","span":{"begin":131,"end":143},"obj":"JJ"},{"id":"T19950","span":{"begin":126,"end":130},"obj":"CC"},{"id":"T19949","span":{"begin":118,"end":125},"obj":"VB"},{"id":"T19948","span":{"begin":115,"end":117},"obj":"TO"},{"id":"T19947","span":{"begin":105,"end":114},"obj":"JJ"},{"id":"T19946","span":{"begin":102,"end":104},"obj":"VB"},{"id":"T19945","span":{"begin":93,"end":101},"obj":"NN"},{"id":"T19944","span":{"begin":84,"end":92},"obj":"JJ"},{"id":"T19943","span":{"begin":75,"end":83},"obj":"NN"},{"id":"T19942","span":{"begin":68,"end":74},"obj":"JJ"},{"id":"T19941","span":{"begin":64,"end":67},"obj":"DT"},{"id":"T19940","span":{"begin":61,"end":63},"obj":"IN"},{"id":"T19939","span":{"begin":59,"end":60},"obj":"-RRB-"},{"id":"T19938","span":{"begin":50,"end":59},"obj":"CD"},{"id":"T19937","span":{"begin":49,"end":50},"obj":"-LRB-"},{"id":"T19936","span":{"begin":44,"end":48},"obj":"NN"},{"id":"T19935","span":{"begin":38,"end":43},"obj":"NN"},{"id":"T19934","span":{"begin":34,"end":37},"obj":"DT"},{"id":"T19933","span":{"begin":29,"end":33},"obj":"IN"},{"id":"T19932","span":{"begin":24,"end":28},"obj":"VB"},{"id":"T19931","span":{"begin":16,"end":23},"obj":"NN"},{"id":"T19930","span":{"begin":12,"end":15},"obj":"PRP-DOLLAR-"},{"id":"T19929","span":{"begin":10,"end":11},"obj":"-COMMA-"},{"id":"T19928","span":{"begin":3,"end":10},"obj":"NN"},{"id":"T19927","span":{"begin":0,"end":2},"obj":"IN"}],"relations":[{"id":"R14437","pred":"arg2Of","subj":"T19928","obj":"T19927"},{"id":"R14438","pred":"arg1Of","subj":"T19931","obj":"T19930"},{"id":"R14439","pred":"arg1Of","subj":"T19931","obj":"T19932"},{"id":"R14440","pred":"arg1Of","subj":"T19932","obj":"T19927"},{"id":"R14441","pred":"arg1Of","subj":"T19932","obj":"T19929"},{"id":"R14442","pred":"arg1Of","subj":"T19936","obj":"T19934"},{"id":"R14443","pred":"arg1Of","subj":"T19936","obj":"T19935"},{"id":"R14444","pred":"arg1Of","subj":"T19936","obj":"T19937"},{"id":"R14445","pred":"arg1Of","subj":"T19936","obj":"T19940"},{"id":"R14446","pred":"arg1Of","subj":"T19936","obj":"T19946"},{"id":"R14447","pred":"arg1Of","subj":"T19936","obj":"T19947"},{"id":"R14448","pred":"arg2Of","subj":"T19938","obj":"T19937"},{"id":"R14449","pred":"arg3Of","subj":"T19939","obj":"T19937"},{"id":"R14450","pred":"arg2Of","subj":"T19945","obj":"T19940"},{"id":"R14451","pred":"arg1Of","subj":"T19945","obj":"T19941"},{"id":"R14452","pred":"arg1Of","subj":"T19945","obj":"T19942"},{"id":"R14453","pred":"arg1Of","subj":"T19945","obj":"T19943"},{"id":"R14454","pred":"arg1Of","subj":"T19945","obj":"T19944"},{"id":"R14455","pred":"arg2Of","subj":"T19946","obj":"T19932"},{"id":"R14456","pred":"arg1Of","subj":"T19946","obj":"T19933"},{"id":"R14457","pred":"arg2Of","subj":"T19947","obj":"T19946"},{"id":"R14458","pred":"arg2Of","subj":"T19949","obj":"T19947"},{"id":"R14459","pred":"arg1Of","subj":"T19949","obj":"T19948"},{"id":"R14460","pred":"arg1Of","subj":"T19951","obj":"T19952"},{"id":"R14461","pred":"arg2Of","subj":"T19953","obj":"T19952"},{"id":"R14462","pred":"arg2Of","subj":"T19956","obj":"T19949"},{"id":"R14463","pred":"arg1Of","subj":"T19956","obj":"T19950"},{"id":"R14464","pred":"arg1Of","subj":"T19956","obj":"T19951"},{"id":"R14465","pred":"arg1Of","subj":"T19956","obj":"T19953"},{"id":"R14466","pred":"arg1Of","subj":"T19956","obj":"T19954"},{"id":"R14467","pred":"arg1Of","subj":"T19956","obj":"T19955"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"In summary, our studies show that the C/EBP site (−203/−195) in the murine SerpinB2 proximal promoter is necessary to support both constitutive and LPS-induced SerpinB2 gene expression."}
bionlp-st-ge-2016-test-proteins
{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T18785","span":{"begin":160,"end":168},"obj":"Protein"},{"id":"T18784","span":{"begin":75,"end":83},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"In summary, our studies show that the C/EBP site (−203/−195) in the murine SerpinB2 proximal promoter is necessary to support both constitutive and LPS-induced SerpinB2 gene expression."}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T20240","span":{"begin":160,"end":168},"obj":"http://www.uniprot.org/uniprot/P05120"},{"id":"T20239","span":{"begin":75,"end":83},"obj":"http://www.uniprot.org/uniprot/P05120"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"In summary, our studies show that the C/EBP site (−203/−195) in the murine SerpinB2 proximal promoter is necessary to support both constitutive and LPS-induced SerpinB2 gene expression."}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T18817","span":{"begin":169,"end":184},"obj":"http://purl.obolibrary.org/obo/GO_0010467"}],"text":"In summary, our studies show that the C/EBP site (−203/−195) in the murine SerpinB2 proximal promoter is necessary to support both constitutive and LPS-induced SerpinB2 gene expression."}
sentences
{"project":"sentences","denotations":[{"id":"T18513","span":{"begin":0,"end":185},"obj":"Sentence"},{"id":"T278","span":{"begin":0,"end":185},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"In summary, our studies show that the C/EBP site (−203/−195) in the murine SerpinB2 proximal promoter is necessary to support both constitutive and LPS-induced SerpinB2 gene expression."}
simple1
{"project":"simple1","denotations":[{"id":"T18922","span":{"begin":160,"end":168},"obj":"Protein"},{"id":"T18921","span":{"begin":75,"end":83},"obj":"Protein"}],"text":"In summary, our studies show that the C/EBP site (−203/−195) in the murine SerpinB2 proximal promoter is necessary to support both constitutive and LPS-induced SerpinB2 gene expression."}
BioNLP16_DUT
{"project":"BioNLP16_DUT","denotations":[{"id":"T20202","span":{"begin":105,"end":114},"obj":"Positive_regulation"},{"id":"T20201","span":{"begin":148,"end":159},"obj":"Positive_regulation"},{"id":"T20200","span":{"begin":174,"end":184},"obj":"Gene_expression"},{"id":"T20130","span":{"begin":160,"end":168},"obj":"Protein"},{"id":"T20129","span":{"begin":75,"end":83},"obj":"Protein"}],"relations":[{"id":"R14569","pred":"themeOf","subj":"T20129","obj":"T20202"},{"id":"R14570","pred":"themeOf","subj":"T20130","obj":"T20200"},{"id":"R14611","pred":"themeOf","subj":"T20200","obj":"T20201"}],"text":"In summary, our studies show that the C/EBP site (−203/−195) in the murine SerpinB2 proximal promoter is necessary to support both constitutive and LPS-induced SerpinB2 gene expression."}
BioNLP16_Messiy
{"project":"BioNLP16_Messiy","denotations":[{"id":"T20640","span":{"begin":174,"end":184},"obj":"Gene_expression"},{"id":"T20639","span":{"begin":148,"end":159},"obj":"Positive_regulation"},{"id":"T20580","span":{"begin":160,"end":168},"obj":"Protein"},{"id":"T20579","span":{"begin":75,"end":83},"obj":"Protein"}],"relations":[{"id":"R14778","pred":"themeOf","subj":"T20580","obj":"T20640"},{"id":"R14801","pred":"themeOf","subj":"T20640","obj":"T20639"}],"text":"In summary, our studies show that the C/EBP site (−203/−195) in the murine SerpinB2 proximal promoter is necessary to support both constitutive and LPS-induced SerpinB2 gene expression."}
DLUT931
{"project":"DLUT931","denotations":[{"id":"T20421","span":{"begin":148,"end":159},"obj":"Positive_regulation"},{"id":"T20420","span":{"begin":131,"end":143},"obj":"Positive_regulation"},{"id":"T20419","span":{"begin":174,"end":184},"obj":"Gene_expression"},{"id":"T20354","span":{"begin":160,"end":168},"obj":"Protein"},{"id":"T20353","span":{"begin":75,"end":83},"obj":"Protein"}],"relations":[{"id":"R14664","pred":"themeOf","subj":"T20354","obj":"T20419"},{"id":"R14699","pred":"themeOf","subj":"T20419","obj":"T20420"},{"id":"R14700","pred":"themeOf","subj":"T20419","obj":"T20421"}],"text":"In summary, our studies show that the C/EBP site (−203/−195) in the murine SerpinB2 proximal promoter is necessary to support both constitutive and LPS-induced SerpinB2 gene expression."}
bionlp-st-ge-2016-test-ihmc
{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T21104","span":{"begin":160,"end":184},"obj":"Gene_expression"},{"id":"T21063","span":{"begin":38,"end":43},"obj":"Protein"},{"id":"T21053","span":{"begin":148,"end":159},"obj":"Entity"},{"id":"T21042","span":{"begin":34,"end":48},"obj":"Entity"},{"id":"T20966","span":{"begin":160,"end":168},"obj":"Protein"},{"id":"T20961","span":{"begin":160,"end":184},"obj":"Protein"},{"id":"T20914","span":{"begin":75,"end":83},"obj":"Protein"},{"id":"T20910","span":{"begin":75,"end":101},"obj":"Entity"}],"relations":[{"id":"R14948","pred":"themeOf","subj":"T20966","obj":"T21104"}],"text":"In summary, our studies show that the C/EBP site (−203/−195) in the murine SerpinB2 proximal promoter is necessary to support both constitutive and LPS-induced SerpinB2 gene expression."}
bionlp-st-ge-2016-test-tees
{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T20770","span":{"begin":148,"end":159},"obj":"Positive_regulation"},{"id":"T20769","span":{"begin":174,"end":184},"obj":"Gene_expression"},{"id":"T20768","span":{"begin":160,"end":173},"obj":"Protein"},{"id":"T20767","span":{"begin":68,"end":101},"obj":"Protein"},{"id":"T20766","span":{"begin":38,"end":48},"obj":"Protein"}],"relations":[{"id":"R14866","pred":"themeOf","subj":"T20768","obj":"T20769"},{"id":"R14867","pred":"themeOf","subj":"T20769","obj":"T20770"}],"text":"In summary, our studies show that the C/EBP site (−203/−195) in the murine SerpinB2 proximal promoter is necessary to support both constitutive and LPS-induced SerpinB2 gene expression."}
testone
{"project":"testone","denotations":[{"id":"T18280","span":{"begin":152,"end":159},"obj":"Positive_regulation"},{"id":"T18279","span":{"begin":105,"end":114},"obj":"Positive_regulation"},{"id":"T18233","span":{"begin":160,"end":168},"obj":"Protein"},{"id":"T18232","span":{"begin":75,"end":83},"obj":"Protein"}],"relations":[{"id":"R13157","pred":"themeOf","subj":"T18280","obj":"T18279"}],"text":"In summary, our studies show that the C/EBP site (−203/−195) in the murine SerpinB2 proximal promoter is necessary to support both constitutive and LPS-induced SerpinB2 gene expression."}
test3
{"project":"test3","denotations":[{"id":"T18476","span":{"begin":174,"end":184},"obj":"Gene_expression"},{"id":"T18475","span":{"begin":160,"end":168},"obj":"Protein"},{"id":"T18474","span":{"begin":152,"end":159},"obj":"Positive_regulation"},{"id":"T18473","span":{"begin":75,"end":83},"obj":"Protein"},{"id":"T18350","span":{"begin":160,"end":168},"obj":"Protein"},{"id":"T18349","span":{"begin":75,"end":83},"obj":"Protein"}],"relations":[{"id":"R13221","pred":"themeOf","subj":"T18475","obj":"T18476"},{"id":"R13222","pred":"themeOf","subj":"T18476","obj":"T18474"}],"text":"In summary, our studies show that the C/EBP site (−203/−195) in the murine SerpinB2 proximal promoter is necessary to support both constitutive and LPS-induced SerpinB2 gene expression."}