PMC:3589482 / 46816-47001
Annnotations
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T22241 | 56-59 | CD | denotes | 195 |
| T22260 | 184-185 | . | denotes | . |
| T22259 | 174-184 | NN | denotes | expression |
| T22258 | 169-173 | NN | denotes | gene |
| T22257 | 160-168 | JJ | denotes | SerpinB2 |
| T22256 | 148-159 | JJ | denotes | LPS-induced |
| T22255 | 144-147 | CC | denotes | and |
| T22254 | 131-143 | JJ | denotes | constitutive |
| T22253 | 126-130 | DT | denotes | both |
| T22252 | 118-125 | VB | denotes | support |
| T22251 | 115-117 | TO | denotes | to |
| T22250 | 105-114 | JJ | denotes | necessary |
| T22249 | 102-104 | VBZ | denotes | is |
| T22248 | 93-101 | NN | denotes | promoter |
| T22247 | 84-92 | JJ | denotes | proximal |
| T22246 | 75-83 | NNP | denotes | SerpinB2 |
| T22245 | 68-74 | NN | denotes | murine |
| T22244 | 64-67 | DT | denotes | the |
| T22243 | 61-63 | IN | denotes | in |
| T22242 | 59-60 | -RRB- | denotes | ) |
| T22240 | 55-56 | NN | denotes | − |
| T22239 | 54-55 | CD | denotes | / |
| T22238 | 51-54 | CD | denotes | 203 |
| T22237 | 50-51 | FW | denotes | − |
| T22236 | 49-50 | -LRB- | denotes | ( |
| T22235 | 44-48 | NN | denotes | site |
| T22234 | 38-43 | NNP | denotes | C/EBP |
| T22233 | 34-37 | DT | denotes | the |
| T22232 | 29-33 | IN | denotes | that |
| T22231 | 24-28 | VBP | denotes | show |
| T22230 | 16-23 | NNS | denotes | studies |
| T22229 | 12-15 | PRP$ | denotes | our |
| T22228 | 10-11 | , | denotes | , |
| T22227 | 3-10 | NN | denotes | summary |
| T22226 | 0-2 | IN | denotes | In |
| R16077 | T22226 | T22231 | prep | In,show |
| R16078 | T22227 | T22226 | pobj | summary,In |
| R16080 | T22228 | T22231 | punct | ",",show |
| R16081 | T22229 | T22230 | poss | our,studies |
| R16083 | T22230 | T22231 | nsubj | studies,show |
| R16084 | T22231 | T22231 | ROOT | show,show |
| R16085 | T22232 | T22231 | dobj | that,show |
| R16087 | T22233 | T22235 | det | the,site |
| R16088 | T22234 | T22235 | compound | C/EBP,site |
| R16089 | T22235 | T22232 | nsubj | site,that |
| R16091 | T22236 | T22249 | punct | (,is |
| R16092 | T22237 | T22239 | nummod | −,/ |
| R16094 | T22238 | T22239 | nummod | 203,/ |
| R16095 | T22239 | T22249 | nsubj | /,is |
| R16096 | T22240 | T22249 | nsubj | −,is |
| R16100 | T22241 | T22240 | nummod | 195,− |
| R16101 | T22242 | T22240 | punct | ),− |
| R16102 | T22243 | T22240 | prep | in,− |
| R16103 | T22244 | T22248 | det | the,promoter |
| R16105 | T22245 | T22248 | amod | murine,promoter |
| R16106 | T22246 | T22248 | nmod | SerpinB2,promoter |
| R16107 | T22247 | T22248 | amod | proximal,promoter |
| R16109 | T22248 | T22243 | pobj | promoter,in |
| R16110 | T22249 | T22235 | parataxis | is,site |
| R16111 | T22250 | T22249 | acomp | necessary,is |
| R16112 | T22251 | T22252 | aux | to,support |
| R16113 | T22252 | T22249 | xcomp | support,is |
| R16114 | T22253 | T22254 | preconj | both,constitutive |
| R16115 | T22254 | T22259 | nmod | constitutive,expression |
| R16116 | T22255 | T22254 | cc | and,constitutive |
| R16117 | T22256 | T22254 | conj | LPS-induced,constitutive |
| R16118 | T22257 | T22259 | amod | SerpinB2,expression |
| R16119 | T22258 | T22259 | compound | gene,expression |
| R16120 | T22259 | T22252 | dobj | expression,support |
| R16121 | T22260 | T22249 | punct | .,is |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T19956 | 174-184 | NN | denotes | expression |
| T19955 | 169-173 | NN | denotes | gene |
| T19954 | 160-168 | NN | denotes | SerpinB2 |
| T19953 | 148-159 | JJ | denotes | LPS-induced |
| T19952 | 144-147 | CC | denotes | and |
| T19951 | 131-143 | JJ | denotes | constitutive |
| T19950 | 126-130 | CC | denotes | both |
| T19949 | 118-125 | VB | denotes | support |
| T19948 | 115-117 | TO | denotes | to |
| T19947 | 105-114 | JJ | denotes | necessary |
| T19946 | 102-104 | VB | denotes | is |
| T19945 | 93-101 | NN | denotes | promoter |
| T19944 | 84-92 | JJ | denotes | proximal |
| T19943 | 75-83 | NN | denotes | SerpinB2 |
| T19942 | 68-74 | JJ | denotes | murine |
| T19941 | 64-67 | DT | denotes | the |
| T19940 | 61-63 | IN | denotes | in |
| T19939 | 59-60 | -RRB- | denotes | ) |
| T19938 | 50-59 | CD | denotes | −203/−195 |
| T19937 | 49-50 | -LRB- | denotes | ( |
| T19936 | 44-48 | NN | denotes | site |
| T19935 | 38-43 | NN | denotes | C/EBP |
| T19934 | 34-37 | DT | denotes | the |
| T19933 | 29-33 | IN | denotes | that |
| T19932 | 24-28 | VB | denotes | show |
| T19931 | 16-23 | NN | denotes | studies |
| T19930 | 12-15 | PRP-DOLLAR- | denotes | our |
| T19929 | 10-11 | -COMMA- | denotes | , |
| T19928 | 3-10 | NN | denotes | summary |
| T19927 | 0-2 | IN | denotes | In |
| R14437 | T19928 | T19927 | arg2Of | summary,In |
| R14438 | T19931 | T19930 | arg1Of | studies,our |
| R14439 | T19931 | T19932 | arg1Of | studies,show |
| R14440 | T19932 | T19927 | arg1Of | show,In |
| R14441 | T19932 | T19929 | arg1Of | show,"," |
| R14442 | T19936 | T19934 | arg1Of | site,the |
| R14443 | T19936 | T19935 | arg1Of | site,C/EBP |
| R14444 | T19936 | T19937 | arg1Of | site,( |
| R14445 | T19936 | T19940 | arg1Of | site,in |
| R14446 | T19936 | T19946 | arg1Of | site,is |
| R14447 | T19936 | T19947 | arg1Of | site,necessary |
| R14448 | T19938 | T19937 | arg2Of | −203/−195,( |
| R14449 | T19939 | T19937 | arg3Of | ),( |
| R14450 | T19945 | T19940 | arg2Of | promoter,in |
| R14451 | T19945 | T19941 | arg1Of | promoter,the |
| R14452 | T19945 | T19942 | arg1Of | promoter,murine |
| R14453 | T19945 | T19943 | arg1Of | promoter,SerpinB2 |
| R14454 | T19945 | T19944 | arg1Of | promoter,proximal |
| R14455 | T19946 | T19932 | arg2Of | is,show |
| R14456 | T19946 | T19933 | arg1Of | is,that |
| R14457 | T19947 | T19946 | arg2Of | necessary,is |
| R14458 | T19949 | T19947 | arg2Of | support,necessary |
| R14459 | T19949 | T19948 | arg1Of | support,to |
| R14460 | T19951 | T19952 | arg1Of | constitutive,and |
| R14461 | T19953 | T19952 | arg2Of | LPS-induced,and |
| R14462 | T19956 | T19949 | arg2Of | expression,support |
| R14463 | T19956 | T19950 | arg1Of | expression,both |
| R14464 | T19956 | T19951 | arg1Of | expression,constitutive |
| R14465 | T19956 | T19953 | arg1Of | expression,LPS-induced |
| R14466 | T19956 | T19954 | arg1Of | expression,SerpinB2 |
| R14467 | T19956 | T19955 | arg1Of | expression,gene |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T18785 | 160-168 | Protein | denotes | SerpinB2 |
| T18784 | 75-83 | Protein | denotes | SerpinB2 |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T20240 | 160-168 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
| T20239 | 75-83 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T18817 | 169-184 | http://purl.obolibrary.org/obo/GO_0010467 | denotes | gene expression |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T18513 | 0-185 | Sentence | denotes | In summary, our studies show that the C/EBP site (−203/−195) in the murine SerpinB2 proximal promoter is necessary to support both constitutive and LPS-induced SerpinB2 gene expression. |
| T278 | 0-185 | Sentence | denotes | In summary, our studies show that the C/EBP site (−203/−195) in the murine SerpinB2 proximal promoter is necessary to support both constitutive and LPS-induced SerpinB2 gene expression. |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T18922 | 160-168 | Protein | denotes | SerpinB2 |
| T18921 | 75-83 | Protein | denotes | SerpinB2 |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T20202 | 105-114 | Positive_regulation | denotes | necessary |
| T20201 | 148-159 | Positive_regulation | denotes | LPS-induced |
| T20200 | 174-184 | Gene_expression | denotes | expression |
| T20130 | 160-168 | Protein | denotes | SerpinB2 |
| T20129 | 75-83 | Protein | denotes | SerpinB2 |
| R14569 | T20129 | T20202 | themeOf | SerpinB2,necessary |
| R14570 | T20130 | T20200 | themeOf | SerpinB2,expression |
| R14611 | T20200 | T20201 | themeOf | expression,LPS-induced |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T20640 | 174-184 | Gene_expression | denotes | expression |
| T20639 | 148-159 | Positive_regulation | denotes | LPS-induced |
| T20580 | 160-168 | Protein | denotes | SerpinB2 |
| T20579 | 75-83 | Protein | denotes | SerpinB2 |
| R14778 | T20580 | T20640 | themeOf | SerpinB2,expression |
| R14801 | T20640 | T20639 | themeOf | expression,LPS-induced |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T20421 | 148-159 | Positive_regulation | denotes | LPS-induced |
| T20420 | 131-143 | Positive_regulation | denotes | constitutive |
| T20419 | 174-184 | Gene_expression | denotes | expression |
| T20354 | 160-168 | Protein | denotes | SerpinB2 |
| T20353 | 75-83 | Protein | denotes | SerpinB2 |
| R14664 | T20354 | T20419 | themeOf | SerpinB2,expression |
| R14699 | T20419 | T20420 | themeOf | expression,constitutive |
| R14700 | T20419 | T20421 | themeOf | expression,LPS-induced |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T21104 | 160-184 | Gene_expression | denotes | SerpinB2 gene expression |
| T21063 | 38-43 | Protein | denotes | C/EBP |
| T21053 | 148-159 | Entity | denotes | LPS-induced |
| T21042 | 34-48 | Entity | denotes | the C/EBP site |
| T20966 | 160-168 | Protein | denotes | SerpinB2 |
| T20961 | 160-184 | Protein | denotes | SerpinB2 gene expression |
| T20914 | 75-83 | Protein | denotes | SerpinB2 |
| T20910 | 75-101 | Entity | denotes | SerpinB2 proximal promoter |
| R14948 | T20966 | T21104 | themeOf | SerpinB2,SerpinB2 gene expression |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T20770 | 148-159 | Positive_regulation | denotes | LPS-induced |
| T20769 | 174-184 | Gene_expression | denotes | expression |
| T20768 | 160-173 | Protein | denotes | SerpinB2 gene |
| T20767 | 68-101 | Protein | denotes | murine SerpinB2 proximal promoter |
| T20766 | 38-48 | Protein | denotes | C/EBP site |
| R14866 | T20768 | T20769 | themeOf | SerpinB2 gene,expression |
| R14867 | T20769 | T20770 | themeOf | expression,LPS-induced |
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T18280 | 152-159 | Positive_regulation | denotes | induced |
| T18279 | 105-114 | Positive_regulation | denotes | necessary |
| T18233 | 160-168 | Protein | denotes | SerpinB2 |
| T18232 | 75-83 | Protein | denotes | SerpinB2 |
| R13157 | T18280 | T18279 | themeOf | induced,necessary |
test3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T18476 | 174-184 | Gene_expression | denotes | expression |
| T18475 | 160-168 | Protein | denotes | SerpinB2 |
| T18474 | 152-159 | Positive_regulation | denotes | induced |
| T18473 | 75-83 | Protein | denotes | SerpinB2 |
| T18350 | 160-168 | Protein | denotes | SerpinB2 |
| T18349 | 75-83 | Protein | denotes | SerpinB2 |
| R13221 | T18475 | T18476 | themeOf | SerpinB2,expression |
| R13222 | T18476 | T18474 | themeOf | expression,induced |