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PMC:3589482 / 43513-43774 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T21662 260-261 . denotes .
T21661 250-260 NN denotes expression
T21660 245-249 NN denotes gene
T21659 236-244 NNP denotes SerpinB2
T21658 224-235 JJ denotes LPS-induced
T21657 221-223 IN denotes in
T21656 219-220 NN denotes β
T21655 218-219 : denotes -
T21654 213-218 NNP denotes C/EBP
T21653 209-212 IN denotes for
T21652 204-208 NN denotes role
T21651 192-203 JJ denotes predominant
T21650 190-191 DT denotes a
T21649 179-189 VBG denotes suggesting
T21648 177-178 , denotes ,
T21647 170-177 NN denotes element
T21646 161-169 NN denotes response
T21645 155-160 NNP denotes C/EBP
T21644 146-154 NNP denotes SerpinB2
T21643 142-145 DT denotes the
T21642 137-141 NN denotes bind
T21641 134-136 TO denotes to
T21640 126-133 NN denotes isoform
T21639 120-125 NNP denotes C/EBP
T21638 106-119 JJ denotes LPS-inducible
T21637 101-105 JJ denotes only
T21636 97-100 DT denotes the
T21635 94-96 IN denotes as
T21634 92-93 NN denotes β
T21633 91-92 : denotes -
T21632 86-91 NNP denotes C/EBP
T21631 75-85 VBD denotes identified
T21630 72-74 PRP denotes we
T21629 70-71 , denotes ,
T21628 69-70 NNP denotes ]
T21627 67-69 CD denotes 63
T21626 66-67 NNP denotes [
T21625 53-65 NNS denotes heterodimers
T21624 50-52 CC denotes or
T21623 39-49 NNS denotes homodimers
T21622 32-38 DT denotes either
T21621 29-31 IN denotes as
T21620 25-28 VB denotes act
T21619 21-24 MD denotes can
T21618 12-20 NNS denotes proteins
T21617 6-11 NNP denotes C/EBP
T21616 0-5 IN denotes While
R15454 T21658 T21661 amod LPS-induced,expression
R15459 T21659 T21661 compound SerpinB2,expression
R15463 T21660 T21661 compound gene,expression
R15466 T21661 T21657 pobj expression,in
R15470 T21662 T21631 punct .,identified
R15486 T21616 T21620 mark While,act
R15487 T21617 T21618 compound C/EBP,proteins
R15489 T21618 T21620 nsubj proteins,act
R15490 T21619 T21620 aux can,act
R15491 T21620 T21631 advcl act,identified
R15492 T21621 T21620 prep as,act
R15493 T21622 T21623 det either,homodimers
R15494 T21623 T21621 pobj homodimers,as
R15496 T21624 T21623 cc or,homodimers
R15497 T21625 T21623 conj heterodimers,homodimers
R15498 T21626 T21628 nmod [,]
R15500 T21627 T21628 nummod 63,]
R15501 T21628 T21623 conj ],homodimers
R15502 T21629 T21631 punct ",",identified
R15504 T21630 T21631 nsubj we,identified
R15505 T21631 T21631 ROOT identified,identified
R15506 T21632 T21634 compound C/EBP,β
R15508 T21633 T21634 punct -,β
R15509 T21634 T21631 dobj β,identified
R15510 T21635 T21631 prep as,identified
R15512 T21636 T21640 det the,isoform
R15513 T21637 T21640 amod only,isoform
R15514 T21638 T21640 amod LPS-inducible,isoform
R15516 T21639 T21640 compound C/EBP,isoform
R15517 T21640 T21635 pobj isoform,as
R15518 T21641 T21642 aux to,bind
R15520 T21642 T21631 advcl bind,identified
R15521 T21643 T21647 det the,element
R15522 T21644 T21645 compound SerpinB2,C/EBP
R15524 T21645 T21647 compound C/EBP,element
R15525 T21646 T21647 compound response,element
R15526 T21647 T21642 dobj element,bind
R15528 T21648 T21631 punct ",",identified
R15529 T21649 T21631 advcl suggesting,identified
R15530 T21650 T21652 det a,role
R15532 T21651 T21652 amod predominant,role
R15533 T21652 T21649 dobj role,suggesting
R15535 T21653 T21652 prep for,role
R15536 T21654 T21656 compound C/EBP,β
R15537 T21655 T21656 punct -,β
R15539 T21656 T21653 pobj β,for
R15540 T21657 T21656 prep in,β

2_test

Id Subject Object Predicate Lexical cue
23472114-21257317-87899190 67-69 21257317 denotes 63
T63857 67-69 21257317 denotes 63

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T19416 250-260 NN denotes expression
T19415 245-249 NN denotes gene
T19414 236-244 NN denotes SerpinB2
T19413 224-235 JJ denotes LPS-induced
T19412 221-223 IN denotes in
T19411 213-220 NN denotes C/EBP-β
T19410 209-212 IN denotes for
T19409 204-208 NN denotes role
T19408 192-203 JJ denotes predominant
T19407 190-191 DT denotes a
T19406 179-189 VB denotes suggesting
T19405 177-178 -COMMA- denotes ,
T19404 170-177 NN denotes element
T19403 161-169 NN denotes response
T19402 155-160 NN denotes C/EBP
T19401 146-154 NN denotes SerpinB2
T19400 142-145 DT denotes the
T19399 137-141 VB denotes bind
T19398 134-136 TO denotes to
T19397 126-133 NN denotes isoform
T19396 120-125 NN denotes C/EBP
T19395 106-119 JJ denotes LPS-inducible
T19394 101-105 JJ denotes only
T19393 97-100 DT denotes the
T19392 94-96 IN denotes as
T19391 86-93 NN denotes C/EBP-β
T19390 75-85 VB denotes identified
T19389 72-74 PRP denotes we
T19388 70-71 -COMMA- denotes ,
T19387 69-70 -RRB- denotes ]
T19386 67-69 CD denotes 63
T19385 66-67 -LRB- denotes [
T19384 53-65 NN denotes heterodimers
T19383 50-52 CC denotes or
T19382 39-49 NN denotes homodimers
T19381 32-38 CC denotes either
T19380 29-31 IN denotes as
T19379 25-28 VB denotes act
T19378 21-24 MD denotes can
T19377 12-20 NN denotes proteins
T19376 6-11 NN denotes C/EBP
T19375 0-5 IN denotes While
R13855 T19377 T19376 arg1Of proteins,C/EBP
R13856 T19377 T19378 arg1Of proteins,can
R13857 T19377 T19379 arg1Of proteins,act
R13858 T19379 T19375 arg2Of act,While
R13859 T19379 T19378 arg2Of act,can
R13860 T19379 T19380 arg1Of act,as
R13861 T19382 T19383 arg1Of homodimers,or
R13862 T19383 T19380 arg2Of or,as
R13863 T19383 T19381 arg1Of or,either
R13864 T19383 T19385 arg1Of or,[
R13865 T19384 T19383 arg2Of heterodimers,or
R13866 T19386 T19385 arg2Of 63,[
R13867 T19387 T19385 arg3Of ],[
R13868 T19389 T19390 arg1Of we,identified
R13869 T19390 T19375 arg1Of identified,While
R13870 T19390 T19388 arg1Of identified,","
R13871 T19390 T19392 arg1Of identified,as
R13872 T19390 T19398 modOf identified,to
R13873 T19390 T19405 arg1Of identified,","
R13874 T19390 T19406 modOf identified,suggesting
R13875 T19391 T19390 arg2Of C/EBP-β,identified
R13876 T19397 T19392 arg2Of isoform,as
R13877 T19397 T19393 arg1Of isoform,the
R13878 T19397 T19394 arg1Of isoform,only
R13879 T19397 T19395 arg1Of isoform,LPS-inducible
R13880 T19397 T19396 arg1Of isoform,C/EBP
R13881 T19399 T19398 arg1Of bind,to
R13882 T19404 T19399 arg2Of element,bind
R13883 T19404 T19400 arg1Of element,the
R13884 T19404 T19401 arg1Of element,SerpinB2
R13885 T19404 T19402 arg1Of element,C/EBP
R13886 T19404 T19403 arg1Of element,response
R13887 T19409 T19406 arg2Of role,suggesting
R13888 T19409 T19407 arg1Of role,a
R13889 T19409 T19408 arg1Of role,predominant
R13890 T19409 T19410 arg1Of role,for
R13891 T19409 T19412 arg1Of role,in
R13892 T19411 T19410 arg2Of C/EBP-β,for
R13893 T19416 T19412 arg2Of expression,in
R13894 T19416 T19413 arg1Of expression,LPS-induced
R13895 T19416 T19414 arg1Of expression,SerpinB2
R13896 T19416 T19415 arg1Of expression,gene

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T18748 236-244 Protein denotes SerpinB2
T18747 213-220 Protein denotes C/EBP-β
T18746 146-154 Protein denotes SerpinB2
T18745 86-93 Protein denotes C/EBP-β

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T20255 213-220 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T20254 86-93 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T20224 236-244 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T20223 146-154 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T18814 245-260 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression

sentences

Id Subject Object Predicate Lexical cue
T18495 0-261 Sentence denotes While C/EBP proteins can act as either homodimers or heterodimers [63], we identified C/EBP-β as the only LPS-inducible C/EBP isoform to bind the SerpinB2 C/EBP response element, suggesting a predominant role for C/EBP-β in LPS-induced SerpinB2 gene expression.
T260 0-261 Sentence denotes While C/EBP proteins can act as either homodimers or heterodimers [63], we identified C/EBP-β as the only LPS-inducible C/EBP isoform to bind the SerpinB2 C/EBP response element, suggesting a predominant role for C/EBP-β in LPS-induced SerpinB2 gene expression.

simple1

Id Subject Object Predicate Lexical cue
T18885 236-244 Protein denotes SerpinB2
T18884 213-220 Protein denotes C/EBP-β
T18883 146-154 Protein denotes SerpinB2
T18882 86-93 Protein denotes C/EBP-β

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T20171 137-141 Binding denotes bind
T20170 224-235 Positive_regulation denotes LPS-induced
T20169 250-260 Gene_expression denotes expression
T20168 204-208 Positive_regulation denotes role
T20093 236-244 Protein denotes SerpinB2
T20092 213-220 Protein denotes C/EBP-β
T20091 146-154 Protein denotes SerpinB2
T20090 86-93 Protein denotes C/EBP-β
R14533 T20090 T20171 themeOf C/EBP-β,bind
R14534 T20091 T20171 themeOf SerpinB2,bind
R14535 T20092 T20168 causeOf C/EBP-β,role
R14536 T20093 T20169 themeOf SerpinB2,expression
R14596 T20169 T20168 themeOf expression,role
R14597 T20169 T20170 themeOf expression,LPS-induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T20543 236-244 Protein denotes SerpinB2
T20542 213-220 Protein denotes C/EBP-β
T20541 146-154 Protein denotes SerpinB2
T20540 86-93 Protein denotes C/EBP-β
T20610 250-260 Gene_expression denotes expression
T20609 137-141 Binding denotes bind
T20608 224-235 Positive_regulation denotes LPS-induced
R14749 T20540 T20609 themeOf C/EBP-β,bind
R14750 T20541 T20609 themeOf SerpinB2,bind
R14751 T20543 T20610 themeOf SerpinB2,expression
R14787 T20610 T20608 themeOf expression,LPS-induced

DLUT931

Id Subject Object Predicate Lexical cue
T20391 224-235 Positive_regulation denotes LPS-induced
T20390 204-208 Regulation denotes role
T20389 250-260 Gene_expression denotes expression
T20388 137-141 Binding denotes bind
T20317 236-244 Protein denotes SerpinB2
T20316 213-220 Protein denotes C/EBP-β
T20315 146-154 Protein denotes SerpinB2
T20314 86-93 Protein denotes C/EBP-β
R14637 T20315 T20388 themeOf SerpinB2,bind
R14638 T20316 T20390 causeOf C/EBP-β,role
R14639 T20317 T20389 themeOf SerpinB2,expression
R14684 T20389 T20390 themeOf expression,role
R14685 T20389 T20391 themeOf expression,LPS-induced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T21090 224-260 Gene_expression denotes LPS-induced SerpinB2 gene expression
T21073 86-93 Protein denotes C/EBP-β
T21059 224-235 Entity denotes LPS-induced
T21049 155-160 Protein denotes C/EBP
T20995 0-20 Protein denotes While C/EBP proteins
T20980 39-49 Entity denotes homodimers
T20972 6-11 Protein denotes C/EBP
T20965 120-125 Protein denotes C/EBP
T20956 146-154 Protein denotes SerpinB2
T20908 213-260 Protein denotes C/EBP-β in LPS-induced SerpinB2 gene expression
T20953 53-71 Entity denotes heterodimers [63],
T20950 236-244 Protein denotes SerpinB2
R14943 T20950 T21090 themeOf SerpinB2,LPS-induced SerpinB2 gene expression

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T20698 120-133 Protein denotes C/EBP isoform
T20697 86-93 Protein denotes C/EBP-β
T20696 6-20 Protein denotes C/EBP proteins
T20706 224-235 Positive_regulation denotes LPS-induced
T20705 204-208 Positive_regulation denotes role
T20704 250-260 Gene_expression denotes expression
T20703 106-119 Positive_regulation denotes LPS-inducible
T20702 39-49 Binding denotes homodimers
T20701 236-249 Protein denotes SerpinB2 gene
T20700 213-220 Protein denotes C/EBP-β
T20699 146-160 Protein denotes SerpinB2 C/EBP
R14828 T20696 T20702 themeOf C/EBP proteins,homodimers
R14829 T20697 T20702 themeOf C/EBP-β,homodimers
R14830 T20698 T20703 themeOf C/EBP isoform,LPS-inducible
R14831 T20700 T20705 causeOf C/EBP-β,role
R14832 T20701 T20704 themeOf SerpinB2 gene,expression
R14833 T20704 T20705 themeOf expression,role
R14834 T20704 T20706 themeOf expression,LPS-induced

testone

Id Subject Object Predicate Lexical cue
T18259 250-260 Gene_expression denotes expression
T18258 228-235 Positive_regulation denotes induced
T18257 204-208 Regulation denotes role
T18256 137-141 Binding denotes bind
T18196 236-244 Protein denotes SerpinB2
T18195 213-220 Protein denotes C/EBP-β
T18194 146-154 Protein denotes SerpinB2
T18193 86-93 Protein denotes C/EBP-β
R13123 T18193 T18256 themeOf C/EBP-β,bind
R13124 T18194 T18256 themeOf SerpinB2,bind
R13125 T18195 T18257 causeOf C/EBP-β,role
R13126 T18196 T18259 themeOf SerpinB2,expression
R13151 T18259 T18258 themeOf expression,induced

test3

Id Subject Object Predicate Lexical cue
T18408 250-260 Gene_expression denotes expression
T18407 236-244 Protein denotes SerpinB2
T18406 228-235 Positive_regulation denotes induced
T18405 213-220 Protein denotes C/EBP-β
T18404 146-154 Protein denotes SerpinB2
T18403 137-141 Binding denotes bind
T18402 86-93 Protein denotes C/EBP-β
T18313 236-244 Protein denotes SerpinB2
T18312 213-220 Protein denotes C/EBP-β
T18311 146-154 Protein denotes SerpinB2
T18310 86-93 Protein denotes C/EBP-β
R13187 T18402 T18403 themeOf C/EBP-β,bind
R13188 T18404 T18403 themeOf SerpinB2,bind
R13189 T18405 T18403 themeOf C/EBP-β,bind
R13190 T18407 T18408 themeOf SerpinB2,expression
R13191 T18408 T18406 themeOf expression,induced