> top > docs > PMC:3589482 > spans > 4343-4757 > annotations

PMC:3589482 / 4343-4757 JSONTXT

Annnotations TAB JSON ListView MergeView

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2980 149-152 CC denotes and
T2979 140-148 NN denotes response
T2978 135-139 NN denotes dose
T2977 131-134 NNP denotes LPS
T2976 129-130 , denotes ,
T2975 121-129 NNS denotes kinetics
T2974 118-120 IN denotes of
T2973 112-117 NNS denotes terms
T2972 109-111 IN denotes in
T2971 103-108 NNS denotes genes
T2970 89-102 JJ denotes LPS-inducible
T2969 83-88 JJ denotes other
T2968 78-82 IN denotes from
T2967 68-77 VBN denotes regulated
T2966 57-67 RB denotes distinctly
T2965 54-56 VBZ denotes is
T2964 45-53 NNP denotes SerpinB2
T2963 40-44 IN denotes that
T2962 30-39 VBD denotes indicated
T2961 25-29 NNS denotes data
T2960 15-24 VBN denotes published
T2959 4-14 RB denotes previously
T2958 0-3 PRP$ denotes Our
T3018 413-414 . denotes .
T3017 406-413 VBN denotes defined
T3016 402-405 RB denotes not
T3015 397-401 VBD denotes were
T3014 388-396 NN denotes promoter
T3013 379-387 NNP denotes SerpinB2
T3012 375-378 DT denotes the
T3011 370-374 NN denotes bind
T3010 365-369 WDT denotes that
T3009 357-364 NNS denotes factors
T3008 343-356 NN denotes transcription
T3007 328-342 JJ denotes LPS-responsive
T3006 319-327 JJ denotes specific
T3005 315-318 DT denotes the
T3004 311-314 CC denotes and
T3003 299-310 NNS denotes macrophages
T3002 296-298 IN denotes in
T3001 282-295 NN denotes transcription
T3000 268-281 JJ denotes LPS-dependent
T2999 264-267 IN denotes for
T2998 252-263 JJ denotes responsible
T2997 243-251 NN denotes promoter
T2996 234-242 NNP denotes SerpinB2
T2995 230-233 DT denotes the
T2994 227-229 IN denotes in
T2993 218-226 NNS denotes elements
T2992 207-217 JJ denotes cis-acting
T2991 203-206 DT denotes the
T2990 201-202 , denotes ,
T2989 194-201 RB denotes however
T2988 192-193 : denotes ;
T2987 191-192 NNP denotes ]
T2986 190-191 CD denotes 4
T2985 189-190 NN denotes [
T2984 174-188 NN denotes co-stimulation
T2983 168-173 JJ denotes IFN-γ
T2982 165-167 TO denotes to
T2981 153-164 NN denotes sensitivity
R2095 T2958 T2961 poss Our,data
R2096 T2959 T2960 advmod previously,published
R2097 T2960 T2961 amod published,data
R2099 T2961 T2962 nsubj data,indicated
R2100 T2962 T2962 ROOT indicated,indicated
R2101 T2963 T2967 mark that,regulated
R2103 T2964 T2967 nsubjpass SerpinB2,regulated
R2104 T2965 T2967 auxpass is,regulated
R2105 T2966 T2967 advmod distinctly,regulated
R2106 T2967 T2962 ccomp regulated,indicated
R2108 T2968 T2967 prep from,regulated
R2109 T2969 T2971 amod other,genes
R2110 T2970 T2971 amod LPS-inducible,genes
R2111 T2971 T2968 pobj genes,from
R2112 T2972 T2967 prep in,regulated
R2114 T2973 T2972 pobj terms,in
R2115 T2974 T2973 prep of,terms
R2116 T2975 T2974 pobj kinetics,of
R2117 T2976 T2967 punct ",",regulated
R2119 T2977 T2979 nmod LPS,response
R2120 T2978 T2979 compound dose,response
R2121 T2979 T2998 nsubjpass response,responsible
R2123 T2980 T2979 cc and,response
R2124 T2981 T2979 conj sensitivity,response
R2125 T2982 T2981 prep to,sensitivity
R2126 T2983 T2985 amod IFN-γ,[
R2128 T2984 T2985 compound co-stimulation,[
R2129 T2985 T2982 pobj [,to
R2130 T2986 T2987 nummod 4,]
R2132 T2987 T2982 pobj ],to
R2133 T2988 T2998 punct ;,responsible
R2134 T2989 T2998 advmod however,responsible
R2136 T2990 T2998 punct ",",responsible
R2137 T2991 T2993 det the,elements
R2138 T2992 T2993 amod cis-acting,elements
R2139 T2993 T2998 nsubj elements,responsible
R2141 T2994 T2993 prep in,elements
R2142 T2995 T2997 det the,promoter
R2143 T2996 T2997 compound SerpinB2,promoter
R2145 T2997 T2994 pobj promoter,in
R2146 T2998 T2962 ccomp responsible,indicated
R2148 T2999 T2998 prep for,responsible
R2149 T3000 T3001 amod LPS-dependent,transcription
R2150 T3001 T2999 pobj transcription,for
R2152 T3002 T3001 prep in,transcription
R2153 T3003 T3002 pobj macrophages,in
R2154 T3004 T3003 cc and,macrophages
R2156 T3005 T3009 det the,factors
R2157 T3006 T3009 amod specific,factors
R2158 T3007 T3009 amod LPS-responsive,factors
R2159 T3008 T3009 compound transcription,factors
R2160 T3009 T2998 dobj factors,responsible
R2161 T3010 T3011 nsubj that,bind
R2163 T3011 T3017 nsubjpass bind,defined
R2164 T3012 T3014 det the,promoter
R2165 T3013 T3014 compound SerpinB2,promoter
R2166 T3014 T3017 nsubjpass promoter,defined
R2168 T3015 T3017 auxpass were,defined
R2169 T3016 T3017 neg not,defined
R2170 T3017 T2962 conj defined,indicated
R2171 T3018 T3017 punct .,defined

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1939 406-413 VB denotes defined
T1938 402-405 RB denotes not
T1937 397-401 VB denotes were
T1936 388-396 NN denotes promoter
T1935 379-387 NN denotes SerpinB2
T1934 375-378 DT denotes the
T1933 370-374 VB denotes bind
T1932 365-369 WDT denotes that
T1931 357-364 NN denotes factors
T1930 343-356 NN denotes transcription
T1929 328-342 JJ denotes LPS-responsive
T1928 319-327 JJ denotes specific
T1927 315-318 DT denotes the
T1926 311-314 CC denotes and
T1925 299-310 NN denotes macrophages
T1924 296-298 IN denotes in
T1923 282-295 NN denotes transcription
T1922 268-281 JJ denotes LPS-dependent
T1921 264-267 IN denotes for
T1920 252-263 JJ denotes responsible
T1919 243-251 NN denotes promoter
T1918 234-242 NN denotes SerpinB2
T1917 230-233 DT denotes the
T1916 227-229 IN denotes in
T1915 218-226 NN denotes elements
T1914 207-217 JJ denotes cis-acting
T1913 203-206 DT denotes the
T1912 201-202 -COMMA- denotes ,
T1911 194-201 RB denotes however
T1910 192-193 -COLON- denotes ;
T1909 191-192 -RRB- denotes ]
T1908 190-191 CD denotes 4
T1907 189-190 -LRB- denotes [
T1906 174-188 NN denotes co-stimulation
T1905 168-173 NN denotes IFN-γ
T1904 165-167 TO denotes to
T1903 153-164 NN denotes sensitivity
T1902 149-152 CC denotes and
T1901 140-148 NN denotes response
T1900 135-139 NN denotes dose
T1899 131-134 NN denotes LPS
T1898 129-130 -COMMA- denotes ,
T1897 121-129 NN denotes kinetics
T1896 118-120 IN denotes of
T1895 112-117 NN denotes terms
T1894 109-111 IN denotes in
T1893 103-108 NN denotes genes
T1892 89-102 JJ denotes LPS-inducible
T1891 83-88 JJ denotes other
T1890 78-82 IN denotes from
T1889 68-77 VB denotes regulated
T1888 57-67 RB denotes distinctly
T1887 54-56 VB denotes is
T1886 45-53 NN denotes SerpinB2
T1885 40-44 IN denotes that
T1884 30-39 VB denotes indicated
T1883 25-29 NN denotes data
T1882 15-24 VB denotes published
T1881 4-14 RB denotes previously
T1880 0-3 PRP-DOLLAR- denotes Our
R1288 T1882 T1881 arg1Of published,previously
R1289 T1883 T1880 arg1Of data,Our
R1290 T1883 T1882 arg1Of data,published
R1291 T1883 T1884 arg1Of data,indicated
R1292 T1886 T1887 arg1Of SerpinB2,is
R1293 T1886 T1889 arg2Of SerpinB2,regulated
R1294 T1889 T1884 arg2Of regulated,indicated
R1295 T1889 T1885 arg1Of regulated,that
R1296 T1889 T1887 arg2Of regulated,is
R1297 T1889 T1888 arg1Of regulated,distinctly
R1298 T1889 T1890 arg1Of regulated,from
R1299 T1889 T1907 arg1Of regulated,[
R1300 T1889 T1910 arg1Of regulated,;
R1301 T1893 T1890 arg2Of genes,from
R1302 T1893 T1891 arg1Of genes,other
R1303 T1893 T1892 arg1Of genes,LPS-inducible
R1304 T1893 T1894 arg1Of genes,in
R1305 T1895 T1894 arg2Of terms,in
R1306 T1895 T1896 arg1Of terms,of
R1307 T1897 T1898 arg1Of kinetics,","
R1308 T1898 T1902 arg1Of ",",and
R1309 T1901 T1898 arg2Of response,","
R1310 T1901 T1899 arg1Of response,LPS
R1311 T1901 T1900 arg1Of response,dose
R1312 T1902 T1896 arg2Of and,of
R1313 T1903 T1902 arg2Of sensitivity,and
R1314 T1903 T1904 arg1Of sensitivity,to
R1315 T1906 T1904 arg2Of co-stimulation,to
R1316 T1906 T1905 arg1Of co-stimulation,IFN-γ
R1317 T1908 T1907 arg2Of 4,[
R1318 T1909 T1907 arg3Of ],[
R1319 T1915 T1913 arg1Of elements,the
R1320 T1915 T1914 arg1Of elements,cis-acting
R1321 T1915 T1916 arg1Of elements,in
R1322 T1915 T1920 arg1Of elements,responsible
R1323 T1915 T1926 arg1Of elements,and
R1324 T1919 T1916 arg2Of promoter,in
R1325 T1919 T1917 arg1Of promoter,the
R1326 T1919 T1918 arg1Of promoter,SerpinB2
R1327 T1920 T1921 arg1Of responsible,for
R1328 T1923 T1921 arg2Of transcription,for
R1329 T1923 T1922 arg1Of transcription,LPS-dependent
R1330 T1923 T1924 arg1Of transcription,in
R1331 T1925 T1924 arg2Of macrophages,in
R1332 T1926 T1937 arg1Of and,were
R1333 T1926 T1939 arg2Of and,defined
R1334 T1931 T1926 arg2Of factors,and
R1335 T1931 T1927 arg1Of factors,the
R1336 T1931 T1928 arg1Of factors,specific
R1337 T1931 T1929 arg1Of factors,LPS-responsive
R1338 T1931 T1930 arg1Of factors,transcription
R1339 T1931 T1932 arg1Of factors,that
R1340 T1931 T1933 arg1Of factors,bind
R1341 T1936 T1933 arg2Of promoter,bind
R1342 T1936 T1934 arg1Of promoter,the
R1343 T1936 T1935 arg1Of promoter,SerpinB2
R1344 T1939 T1910 arg2Of defined,;
R1345 T1939 T1911 arg1Of defined,however
R1346 T1939 T1912 arg1Of defined,","
R1347 T1939 T1937 arg2Of defined,were
R1348 T1939 T1938 arg1Of defined,not

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1316 379-387 Protein denotes SerpinB2
T1315 234-242 Protein denotes SerpinB2
T1314 168-173 Protein denotes IFN-γ
T1313 45-53 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2114 379-387 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T2113 234-242 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T2112 45-53 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T2130 168-173 http://www.uniprot.org/uniprot/P01579 denotes IFN-γ

GO-BP

Id Subject Object Predicate Lexical cue
T1375 343-356 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T1374 282-295 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

sentences

Id Subject Object Predicate Lexical cue
T1218 0-414 Sentence denotes Our previously published data indicated that SerpinB2 is distinctly regulated from other LPS-inducible genes in terms of kinetics, LPS dose response and sensitivity to IFN-γ co-stimulation [4]; however, the cis-acting elements in the SerpinB2 promoter responsible for LPS-dependent transcription in macrophages and the specific LPS-responsive transcription factors that bind the SerpinB2 promoter were not defined.
T28 0-414 Sentence denotes Our previously published data indicated that SerpinB2 is distinctly regulated from other LPS-inducible genes in terms of kinetics, LPS dose response and sensitivity to IFN-γ co-stimulation [4]; however, the cis-acting elements in the SerpinB2 promoter responsible for LPS-dependent transcription in macrophages and the specific LPS-responsive transcription factors that bind the SerpinB2 promoter were not defined.

simple1

Id Subject Object Predicate Lexical cue
T1414 379-387 Protein denotes SerpinB2
T1413 234-242 Protein denotes SerpinB2
T1412 168-173 Protein denotes IFN-γ
T1411 45-53 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2072 379-387 Protein denotes SerpinB2
T2071 234-242 Protein denotes SerpinB2
T2070 168-173 Protein denotes IFN-γ
T2069 45-53 Protein denotes SerpinB2
T2092 282-295 Transcription denotes transcription
T2091 68-77 Regulation denotes regulated
T2090 370-374 Binding denotes bind
R1457 T2069 T2091 themeOf SerpinB2,regulated
R1458 T2071 T2092 themeOf SerpinB2,transcription
R1459 T2072 T2090 themeOf SerpinB2,bind

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2228 45-53 Protein denotes SerpinB2
T2231 379-387 Protein denotes SerpinB2
T2230 234-242 Protein denotes SerpinB2
T2229 168-173 Protein denotes IFN-γ
T2250 68-77 Regulation denotes regulated
T2249 370-374 Binding denotes bind
R1514 T2231 T2249 themeOf SerpinB2,bind
R1518 T2228 T2250 themeOf SerpinB2,regulated

DLUT931

Id Subject Object Predicate Lexical cue
T2170 370-374 Binding denotes bind
T2169 68-77 Regulation denotes regulated
T2150 379-387 Protein denotes SerpinB2
T2149 234-242 Protein denotes SerpinB2
T2148 168-173 Protein denotes IFN-γ
T2147 45-53 Protein denotes SerpinB2
R1484 T2147 T2169 themeOf SerpinB2,regulated
R1485 T2150 T2170 themeOf SerpinB2,bind

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2483 168-192 Positive_regulation denotes IFN-γ co-stimulation [4]
T2481 264-295 Regulation denotes for LPS-dependent transcription
T2461 268-281 Entity denotes LPS-dependent
T2443 379-387 Protein denotes SerpinB2
T2439 230-295 Entity denotes the SerpinB2 promoter responsible for LPS-dependent transcription
T2433 83-108 Protein denotes other LPS-inducible genes
T2431 375-396 Entity denotes the SerpinB2 promoter
T2429 234-242 Protein denotes SerpinB2
T2410 45-67 Protein denotes SerpinB2 is distinctly
T2406 168-173 Protein denotes IFN-γ
T2402 328-331 Entity denotes LPS
T2383 299-310 Entity denotes macrophages
T2380 131-134 Entity denotes LPS
R1599 T2461 T2481 causeOf LPS-dependent,for LPS-dependent transcription
R1613 T2406 T2483 themeOf IFN-γ,IFN-γ co-stimulation [4]
R1630 T2431 T2443 partOf the SerpinB2 promoter,SerpinB2
R1636 T2439 T2429 partOf the SerpinB2 promoter responsible for LPS-dependent transcription,SerpinB2

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T2302 252-263 Regulation denotes responsible
T2301 370-374 Binding denotes bind
T2300 282-295 Transcription denotes transcription
T2299 379-396 Protein denotes SerpinB2 promoter
T2298 234-251 Protein denotes SerpinB2 promoter
T2297 168-173 Protein denotes IFN-γ
R1569 T2298 T2300 themeOf SerpinB2 promoter,transcription
R1571 T2299 T2301 themeOf SerpinB2 promoter,bind
R1572 T2300 T2302 themeOf transcription,responsible

testone

Id Subject Object Predicate Lexical cue
T1127 370-374 Binding denotes bind
T1126 68-77 Regulation denotes regulated
T1111 379-387 Protein denotes SerpinB2
T1110 234-242 Protein denotes SerpinB2
T1109 168-173 Protein denotes IFN-γ
T1108 45-53 Protein denotes SerpinB2
R748 T1108 T1127 themeOf SerpinB2,bind
R749 T1108 T1126 themeOf SerpinB2,regulated

test3

Id Subject Object Predicate Lexical cue
T1182 379-387 Protein denotes SerpinB2
T1181 370-374 Binding denotes bind
T1180 234-242 Protein denotes SerpinB2
T1179 168-173 Protein denotes IFN-γ
T1178 68-77 Regulation denotes regulated
T1177 45-53 Protein denotes SerpinB2
T1152 379-387 Protein denotes SerpinB2
T1151 234-242 Protein denotes SerpinB2
T1150 168-173 Protein denotes IFN-γ
T1149 45-53 Protein denotes SerpinB2
R759 T1177 T1178 themeOf SerpinB2,regulated
R760 T1182 T1181 themeOf SerpinB2,bind