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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T856 203-211 NN denotes promoter
T855 194-202 CD denotes SerpinB2
T854 180-193 JJ denotes LPS-regulated
T853 176-179 DT denotes the
T852 172-175 VB denotes map
T851 169-171 TO denotes To
T850 167-168 . denotes .
T849 156-167 NNS denotes macrophages
T848 149-155 JJ denotes murine
T847 146-148 IN denotes in
T846 142-145 NNS denotes hrs
T845 139-141 CD denotes 24
T844 136-138 IN denotes of
T843 129-135 NN denotes period
T842 127-128 DT denotes a
T841 122-126 IN denotes over
T840 112-121 JJ denotes 1000-fold
T839 111-112 CD denotes ∼
T838 108-110 IN denotes by
T837 106-107 -RRB- denotes )
T836 102-106 CD denotes TLR4
T835 101-102 -LRB- denotes (
T834 99-100 CD denotes 4
T833 90-98 NN denotes receptor
T832 80-89 JJ denotes toll-like
T831 76-79 DT denotes the
T830 72-75 IN denotes via
T829 61-71 NN denotes expression
T828 52-60 NNP denotes SerpinB2
T827 45-51 VB denotes induce
T826 41-44 MD denotes can
T825 39-40 , denotes ,
T824 30-39 NN denotes endotoxin
T823 20-29 JJ denotes bacterial
T822 13-19 JJ denotes potent
T821 11-12 DT denotes a
T820 9-10 , denotes ,
T819 8-9 -RRB- denotes )
T818 5-8 NNP denotes LPS
T817 4-5 -LRB- denotes (
T884 357-363 JJ denotes murine
T883 352-356 IN denotes into
T882 344-351 NNS denotes mutants
T881 335-343 NN denotes deletion
T880 327-334 JJ denotes several
T879 323-326 CC denotes and
T878 318-322 NN denotes gene
T877 309-317 NNP denotes SerpinB2
T876 302-308 NN denotes murine
T875 298-301 DT denotes the
T874 295-297 IN denotes of
T873 288-294 NN denotes region
T872 279-287 VBG denotes flanking
T871 278-279 : denotes -
T870 277-278 '' denotes '
T869 276-277 CD denotes 5
T868 273-275 NN denotes kb
T867 271-272 CD denotes 5
T866 270-271 NN denotes ∼
T865 266-269 DT denotes the
T864 263-265 IN denotes by
T863 256-262 VBN denotes driven
T862 245-255 NNS denotes constructs
T861 236-244 NN denotes reporter
T860 224-235 VBD denotes transfected
T859 221-223 PRP denotes we
T858 219-220 , denotes ,
T857 212-219 NNS denotes regions
R404 T817 T818 punct (,LPS
R408 T821 T824 det a,endotoxin
R409 T822 T824 amod potent,endotoxin
R410 T823 T824 amod bacterial,endotoxin
R412 T825 T827 punct ",",induce
R413 T826 T827 aux can,induce
R414 T827 T827 ROOT induce,induce
R415 T828 T829 compound SerpinB2,expression
R416 T829 T827 dobj expression,induce
R417 T830 T827 prep via,induce
R418 T831 T833 det the,receptor
R419 T832 T833 amod toll-like,receptor
R420 T833 T830 pobj receptor,via
R421 T834 T833 nummod 4,receptor
R422 T835 T833 punct (,receptor
R423 T836 T833 appos TLR4,receptor
R424 T837 T833 punct ),receptor
R425 T838 T827 prep by,induce
R426 T839 T838 pobj ∼,by
R427 T840 T827 advcl 1000-fold,induce
R428 T841 T840 prep over,1000-fold
R429 T842 T843 det a,period
R430 T843 T841 pobj period,over
R431 T844 T843 prep of,period
R432 T845 T846 nummod 24,hrs
R433 T846 T844 pobj hrs,of
R434 T847 T846 prep in,hrs
R435 T848 T849 amod murine,macrophages
R436 T849 T847 pobj macrophages,in
R437 T850 T827 punct .,induce
R438 T851 T852 aux To,map
R439 T852 T860 advcl map,transfected
R440 T853 T857 det the,regions
R441 T854 T857 amod LPS-regulated,regions
R442 T855 T857 nummod SerpinB2,regions
R443 T856 T857 compound promoter,regions
R444 T857 T852 dobj regions,map
R445 T858 T860 punct ",",transfected
R446 T859 T860 nsubj we,transfected
R447 T860 T860 ROOT transfected,transfected
R448 T861 T862 compound reporter,constructs
R449 T862 T860 dobj constructs,transfected
R450 T863 T862 acl driven,constructs
R451 T864 T863 agent by,driven
R452 T865 T873 det the,region
R453 T866 T868 nmod ∼,kb
R454 T867 T866 nummod 5,∼
R455 T868 T872 meta kb,flanking
R456 T869 T868 nummod 5,kb
R457 T870 T869 punct ',5
R458 T871 T872 punct -,flanking
R459 T872 T873 amod flanking,region
R460 T873 T864 pobj region,by
R461 T874 T873 prep of,region
R462 T875 T878 det the,gene
R463 T876 T878 compound murine,gene
R464 T877 T878 compound SerpinB2,gene
R465 T878 T874 pobj gene,of
R466 T879 T878 cc and,gene
R467 T880 T882 amod several,mutants
R468 T881 T882 compound deletion,mutants
R469 T882 T878 conj mutants,gene
R470 T883 T863 prep into,driven

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T307 139-141 CD denotes 24
T306 136-138 IN denotes of
T305 129-135 NN denotes period
T304 127-128 DT denotes a
T303 122-126 IN denotes over
T302 111-121 RB denotes ∼1000-fold
T301 108-110 IN denotes by
T300 106-107 -RRB- denotes )
T299 102-106 NN denotes TLR4
T298 101-102 -LRB- denotes (
T297 99-100 CD denotes 4
T296 90-98 NN denotes receptor
T295 80-89 JJ denotes toll-like
T294 76-79 DT denotes the
T293 72-75 IN denotes via
T292 61-71 NN denotes expression
T291 52-60 NN denotes SerpinB2
T290 45-51 VB denotes induce
T289 41-44 MD denotes can
T288 39-40 -COMMA- denotes ,
T287 30-39 NN denotes endotoxin
T286 20-29 JJ denotes bacterial
T285 13-19 JJ denotes potent
T284 11-12 DT denotes a
T283 9-10 -COMMA- denotes ,
T282 8-9 -RRB- denotes )
T281 5-8 NN denotes LPS
T280 4-5 -LRB- denotes (
T341 357-363 JJ denotes murine
T340 352-356 IN denotes into
T339 344-351 NN denotes mutants
T338 335-343 NN denotes deletion
T337 327-334 JJ denotes several
T336 323-326 CC denotes and
T335 318-322 NN denotes gene
T334 309-317 NN denotes SerpinB2
T333 302-308 JJ denotes murine
T332 298-301 DT denotes the
T331 295-297 IN denotes of
T330 288-294 NN denotes region
T329 276-287 JJ denotes 5'-flanking
T328 273-275 NN denotes kb
T327 270-272 CD denotes ∼5
T326 266-269 DT denotes the
T325 263-265 IN denotes by
T324 256-262 VB denotes driven
T323 245-255 NN denotes constructs
T322 236-244 NN denotes reporter
T321 224-235 VB denotes transfected
T320 221-223 PRP denotes we
T319 219-220 -COMMA- denotes ,
T318 212-219 NN denotes regions
T317 203-211 NN denotes promoter
T316 194-202 NN denotes SerpinB2
T315 180-193 JJ denotes LPS-regulated
T314 176-179 DT denotes the
T313 172-175 VB denotes map
T312 169-171 TO denotes To
T311 156-167 NN denotes macrophages
T310 149-155 JJ denotes murine
T309 146-148 IN denotes in
T308 142-145 NN denotes hrs
R94 T281 T280 arg2Of LPS,(
R95 T282 T280 arg3Of ),(
R96 T287 T283 arg2Of endotoxin,","
R97 T287 T284 arg1Of endotoxin,a
R98 T287 T285 arg1Of endotoxin,potent
R99 T287 T286 arg1Of endotoxin,bacterial
R100 T290 T288 arg1Of induce,","
R101 T290 T289 arg2Of induce,can
R102 T290 T293 arg1Of induce,via
R103 T290 T301 arg1Of induce,by
R104 T290 T303 arg1Of induce,over
R105 T292 T290 arg2Of expression,induce
R106 T292 T291 arg1Of expression,SerpinB2
R107 T296 T293 arg2Of receptor,via
R108 T296 T294 arg1Of receptor,the
R109 T296 T295 arg1Of receptor,toll-like
R110 T296 T297 arg1Of receptor,4
R111 T296 T298 arg1Of receptor,(
R112 T299 T298 arg2Of TLR4,(
R113 T300 T298 arg3Of ),(
R114 T302 T301 arg2Of ∼1000-fold,by
R115 T305 T303 arg2Of period,over
R116 T305 T304 arg1Of period,a
R117 T305 T306 arg1Of period,of
R118 T305 T309 arg1Of period,in
R119 T308 T306 arg2Of hrs,of
R120 T308 T307 arg1Of hrs,24
R121 T311 T309 arg2Of macrophages,in
R122 T311 T310 arg1Of macrophages,murine
R123 T313 T312 arg1Of map,To
R124 T318 T313 arg2Of regions,map
R125 T318 T314 arg1Of regions,the
R126 T318 T315 arg1Of regions,LPS-regulated
R127 T318 T316 arg1Of regions,SerpinB2
R128 T318 T317 arg1Of regions,promoter
R129 T320 T313 arg1Of we,map
R130 T320 T321 arg1Of we,transfected
R131 T321 T312 modOf transfected,To
R132 T321 T319 arg1Of transfected,","
R133 T323 T321 arg2Of constructs,transfected
R134 T323 T322 arg1Of constructs,reporter
R135 T323 T324 arg2Of constructs,driven
R136 T330 T324 arg1Of region,driven
R137 T330 T325 arg2Of region,by
R138 T330 T326 arg1Of region,the
R139 T330 T327 arg1Of region,∼5
R140 T330 T328 arg1Of region,kb
R141 T330 T329 arg1Of region,5'-flanking
R142 T330 T331 arg1Of region,of
R143 T330 T340 arg1Of region,into
R144 T335 T332 arg1Of gene,the
R145 T335 T333 arg1Of gene,murine
R146 T335 T334 arg1Of gene,SerpinB2
R147 T335 T336 arg1Of gene,and
R148 T336 T331 arg2Of and,of
R149 T339 T336 arg2Of mutants,and
R150 T339 T337 arg1Of mutants,several
R151 T339 T338 arg1Of mutants,deletion

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T162 52-60 Protein denotes SerpinB2
T163 80-100 Protein denotes toll-like receptor 4
T164 102-106 Protein denotes TLR4
T165 194-202 Protein denotes SerpinB2
T166 309-317 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T539 102-106 http://www.uniprot.org/uniprot/O00206 denotes TLR4
T531 52-60 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T532 194-202 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T533 309-317 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

simple1

Id Subject Object Predicate Lexical cue
T215 52-60 Protein denotes SerpinB2
T216 80-100 Protein denotes toll-like receptor 4
T217 102-106 Protein denotes TLR4
T218 194-202 Protein denotes SerpinB2
T219 309-317 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T514 45-51 Positive_regulation denotes induce
T513 61-71 Gene_expression denotes expression
T500 194-202 Protein denotes SerpinB2
T499 309-317 Protein denotes SerpinB2
T498 102-106 Protein denotes TLR4
T496 52-60 Protein denotes SerpinB2
T497 80-100 Protein denotes toll-like receptor 4
R308 T513 T514 themeOf expression,induce
R680 T496 T513 themeOf SerpinB2,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T606 52-60 Protein denotes SerpinB2
T607 80-100 Protein denotes toll-like receptor 4
T608 102-106 Protein denotes TLR4
T609 309-317 Protein denotes SerpinB2
T610 194-202 Protein denotes SerpinB2
T623 61-71 Gene_expression denotes expression
T624 45-51 Positive_regulation denotes induce
R718 T606 T623 themeOf SerpinB2,expression
R720 T607 T624 causeOf toll-like receptor 4,induce
R733 T623 T624 themeOf expression,induce

DLUT931

Id Subject Object Predicate Lexical cue
T572 52-60 Protein denotes SerpinB2
T573 80-100 Protein denotes toll-like receptor 4
T574 102-106 Protein denotes TLR4
T575 309-317 Protein denotes SerpinB2
T576 194-202 Protein denotes SerpinB2
T590 61-71 Gene_expression denotes expression
T591 45-51 Positive_regulation denotes induce
R685 T572 T590 themeOf SerpinB2,expression
R686 T573 T591 causeOf toll-like receptor 4,induce
R693 T590 T591 themeOf expression,induce

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T760 139-167 Localization denotes 24 hrs in murine macrophages
T759 52-71 Gene_expression denotes SerpinB2 expression
T753 309-317 Protein denotes SerpinB2
T750 5-8 Entity denotes LPS
T748 52-60 Protein denotes SerpinB2
T711 30-39 Entity denotes endotoxin
T714 76-107 Protein denotes the toll-like receptor 4 (TLR4)
T715 102-106 Protein denotes TLR4
T719 139-167 Protein denotes 24 hrs in murine macrophages
T720 194-202 Protein denotes SerpinB2
T724 149-167 Entity denotes murine macrophages
T729 176-220 Entity denotes the LPS-regulated SerpinB2 promoter regions,
T741 180-193 Entity denotes LPS-regulated
T743 295-322 Protein denotes of the murine SerpinB2 gene
R348 T748 T759 themeOf SerpinB2,SerpinB2 expression
R721 T719 T760 themeOf 24 hrs in murine macrophages,24 hrs in murine macrophages
R723 T724 T760 locationOf murine macrophages,24 hrs in murine macrophages

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T649 302-322 Protein denotes murine SerpinB2 gene
T648 194-211 Protein denotes SerpinB2 promoter
T647 45-51 Positive_regulation denotes induce
T646 61-71 Gene_expression denotes expression
T645 52-60 Protein denotes SerpinB2
R324 T645 T646 themeOf SerpinB2,expression
R325 T646 T647 themeOf expression,induce

testone

Id Subject Object Predicate Lexical cue
T40 61-71 Gene_expression denotes expression
T39 45-51 Positive_regulation denotes induce
T29 309-317 Protein denotes SerpinB2
T28 194-202 Protein denotes SerpinB2
T27 102-106 Protein denotes TLR4
T26 80-100 Protein denotes toll-like receptor 4
T25 52-60 Protein denotes SerpinB2
R3 T27 T26 equivalentTo TLR4,toll-like receptor 4
R8 T40 T39 themeOf expression,induce
R2 T25 T40 themeOf SerpinB2,expression

test3

Id Subject Object Predicate Lexical cue
T80 309-317 Protein denotes SerpinB2
T79 194-202 Protein denotes SerpinB2
T78 102-106 Protein denotes TLR4
T77 80-100 Protein denotes toll-like receptor 4
T76 61-71 Gene_expression denotes expression
T75 52-60 Protein denotes SerpinB2
T74 45-51 Positive_regulation denotes induce
T58 309-317 Protein denotes SerpinB2
T57 194-202 Protein denotes SerpinB2
T56 102-106 Protein denotes TLR4
T55 80-100 Protein denotes toll-like receptor 4
T54 52-60 Protein denotes SerpinB2
R17 T75 T76 themeOf SerpinB2,expression
R18 T76 T74 themeOf expression,induce
R19 T78 T77 equivalentTo TLR4,toll-like receptor 4