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PMC:3589482 / 40739-40930 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T21169 190-191 . denotes .
T21168 182-190 NNP denotes SerpinB2
T21167 175-181 NN denotes factor
T21166 162-174 JJ denotes pro-survival
T21165 158-161 DT denotes the
T21164 155-157 IN denotes of
T21163 145-154 NN denotes induction
T21162 137-144 JJ denotes massive
T21161 128-136 VBZ denotes involves
T21160 122-127 WDT denotes which
T21159 113-121 NN denotes response
T21158 97-112 JJ denotes anti-pathogenic
T21157 94-96 DT denotes an
T21156 88-93 VB denotes mount
T21155 85-87 TO denotes to
T21154 73-84 NNS denotes macrophages
T21153 63-72 VBP denotes stimulate
T21152 61-62 , denotes ,
T21151 58-61 NNP denotes LPS
T21150 48-57 NN denotes endotoxin
T21149 38-47 JJ denotes bacterial
T21148 34-37 DT denotes the
T21147 31-33 IN denotes as
T21146 26-30 JJ denotes such
T21145 24-25 , denotes ,
T21144 17-24 NNS denotes stimuli
T21143 0-16 JJ denotes Pro-inflammatory
R15004 T21143 T21144 amod Pro-inflammatory,stimuli
R15005 T21144 T21153 nsubj stimuli,stimulate
R15006 T21145 T21144 punct ",",stimuli
R15007 T21146 T21147 amod such,as
R15008 T21147 T21144 prep as,stimuli
R15009 T21148 T21151 det the,LPS
R15010 T21149 T21151 amod bacterial,LPS
R15011 T21150 T21151 compound endotoxin,LPS
R15012 T21151 T21147 pobj LPS,as
R15013 T21152 T21144 punct ",",stimuli
R15014 T21153 T21153 ROOT stimulate,stimulate
R15015 T21154 T21153 dobj macrophages,stimulate
R15016 T21155 T21156 aux to,mount
R15017 T21156 T21153 advcl mount,stimulate
R15018 T21157 T21159 det an,response
R15019 T21158 T21159 amod anti-pathogenic,response
R15020 T21159 T21156 dobj response,mount
R15021 T21160 T21161 nsubj which,involves
R15022 T21161 T21159 relcl involves,response
R15023 T21162 T21163 amod massive,induction
R15024 T21163 T21161 dobj induction,involves
R15025 T21164 T21163 prep of,induction
R15026 T21165 T21167 det the,factor
R15027 T21166 T21167 amod pro-survival,factor
R15028 T21167 T21164 pobj factor,of
R15029 T21168 T21163 conj SerpinB2,induction
R15030 T21169 T21153 punct .,stimulate

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T18970 182-190 NN denotes SerpinB2
T18969 175-181 NN denotes factor
T18968 162-174 JJ denotes pro-survival
T18967 158-161 DT denotes the
T18966 155-157 IN denotes of
T18965 145-154 NN denotes induction
T18964 137-144 JJ denotes massive
T18963 128-136 VB denotes involves
T18962 122-127 WDT denotes which
T18961 113-121 NN denotes response
T18960 97-112 JJ denotes anti-pathogenic
T18959 94-96 DT denotes an
T18958 88-93 VB denotes mount
T18957 85-87 TO denotes to
T18956 73-84 NN denotes macrophages
T18955 63-72 VB denotes stimulate
T18954 61-62 -COMMA- denotes ,
T18953 58-61 NN denotes LPS
T18952 48-57 NN denotes endotoxin
T18951 38-47 JJ denotes bacterial
T18950 34-37 DT denotes the
T18949 31-33 IN denotes as
T18948 26-30 JJ denotes such
T18947 24-25 -COMMA- denotes ,
T18946 17-24 NN denotes stimuli
T18945 0-16 JJ denotes Pro-inflammatory
R13405 T18946 T18945 arg1Of stimuli,Pro-inflammatory
R13406 T18946 T18947 arg1Of stimuli,","
R13407 T18946 T18949 arg1Of stimuli,as
R13408 T18946 T18955 arg1Of stimuli,stimulate
R13409 T18949 T18948 arg1Of as,such
R13410 T18953 T18949 arg2Of LPS,as
R13411 T18953 T18950 arg1Of LPS,the
R13412 T18953 T18951 arg1Of LPS,bacterial
R13413 T18953 T18952 arg1Of LPS,endotoxin
R13414 T18955 T18954 arg1Of stimulate,","
R13415 T18956 T18955 arg2Of macrophages,stimulate
R13416 T18956 T18958 arg1Of macrophages,mount
R13417 T18958 T18955 arg3Of mount,stimulate
R13418 T18958 T18957 arg1Of mount,to
R13419 T18961 T18958 arg2Of response,mount
R13420 T18961 T18959 arg1Of response,an
R13421 T18961 T18960 arg1Of response,anti-pathogenic
R13422 T18961 T18962 arg1Of response,which
R13423 T18961 T18963 arg1Of response,involves
R13424 T18965 T18963 arg2Of induction,involves
R13425 T18965 T18964 arg1Of induction,massive
R13426 T18965 T18966 arg1Of induction,of
R13427 T18970 T18966 arg2Of SerpinB2,of
R13428 T18970 T18967 arg1Of SerpinB2,the
R13429 T18970 T18968 arg1Of SerpinB2,pro-survival
R13430 T18970 T18969 arg1Of SerpinB2,factor

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T18717 182-190 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T20208 182-190 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T18795 162-174 http://purl.obolibrary.org/obo/GO_0043066 denotes pro-survival

sentences

Id Subject Object Predicate Lexical cue
T18481 0-191 Sentence denotes Pro-inflammatory stimuli, such as the bacterial endotoxin LPS, stimulate macrophages to mount an anti-pathogenic response which involves massive induction of the pro-survival factor SerpinB2.
T246 0-191 Sentence denotes Pro-inflammatory stimuli, such as the bacterial endotoxin LPS, stimulate macrophages to mount an anti-pathogenic response which involves massive induction of the pro-survival factor SerpinB2.

simple1

Id Subject Object Predicate Lexical cue
T18854 182-190 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T20062 182-190 Protein denotes SerpinB2
T20133 145-154 Positive_regulation denotes induction
R14504 T20062 T20133 themeOf SerpinB2,induction

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T20584 128-136 Positive_regulation denotes involves
T20583 145-154 Positive_regulation denotes induction
T20512 182-190 Protein denotes SerpinB2
R14726 T20512 T20583 themeOf SerpinB2,induction
R14780 T20583 T20584 themeOf induction,involves

DLUT931

Id Subject Object Predicate Lexical cue
T20359 137-144 Positive_regulation denotes massive
T20358 128-136 Positive_regulation denotes involves
T20357 145-154 Positive_regulation denotes induction
T20286 182-190 Protein denotes SerpinB2
R14667 T20357 T20358 themeOf induction,involves
R14668 T20357 T20359 themeOf induction,massive
R14614 T20286 T20357 themeOf SerpinB2,induction

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T21114 137-190 Positive_regulation denotes massive induction of the pro-survival factor SerpinB2
T21113 137-190 Gene_expression denotes massive induction of the pro-survival factor SerpinB2
T21078 73-84 Entity denotes macrophages
T21003 155-190 Protein denotes of the pro-survival factor SerpinB2
T20987 34-61 Entity denotes the bacterial endotoxin LPS
R14958 T21003 T21113 themeOf of the pro-survival factor SerpinB2,massive induction of the pro-survival factor SerpinB2
R14959 T21003 T21114 themeOf of the pro-survival factor SerpinB2,massive induction of the pro-survival factor SerpinB2

testone

Id Subject Object Predicate Lexical cue
T18165 182-190 Protein denotes SerpinB2

test3

Id Subject Object Predicate Lexical cue
T18282 182-190 Protein denotes SerpinB2
T18353 182-190 Protein denotes SerpinB2