PMC:3589482 / 40739-40930 JSONTXT

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    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T21169","span":{"begin":190,"end":191},"obj":"."},{"id":"T21168","span":{"begin":182,"end":190},"obj":"NNP"},{"id":"T21167","span":{"begin":175,"end":181},"obj":"NN"},{"id":"T21166","span":{"begin":162,"end":174},"obj":"JJ"},{"id":"T21165","span":{"begin":158,"end":161},"obj":"DT"},{"id":"T21164","span":{"begin":155,"end":157},"obj":"IN"},{"id":"T21163","span":{"begin":145,"end":154},"obj":"NN"},{"id":"T21162","span":{"begin":137,"end":144},"obj":"JJ"},{"id":"T21161","span":{"begin":128,"end":136},"obj":"VBZ"},{"id":"T21160","span":{"begin":122,"end":127},"obj":"WDT"},{"id":"T21159","span":{"begin":113,"end":121},"obj":"NN"},{"id":"T21158","span":{"begin":97,"end":112},"obj":"JJ"},{"id":"T21157","span":{"begin":94,"end":96},"obj":"DT"},{"id":"T21156","span":{"begin":88,"end":93},"obj":"VB"},{"id":"T21155","span":{"begin":85,"end":87},"obj":"TO"},{"id":"T21154","span":{"begin":73,"end":84},"obj":"NNS"},{"id":"T21153","span":{"begin":63,"end":72},"obj":"VBP"},{"id":"T21152","span":{"begin":61,"end":62},"obj":","},{"id":"T21151","span":{"begin":58,"end":61},"obj":"NNP"},{"id":"T21150","span":{"begin":48,"end":57},"obj":"NN"},{"id":"T21149","span":{"begin":38,"end":47},"obj":"JJ"},{"id":"T21148","span":{"begin":34,"end":37},"obj":"DT"},{"id":"T21147","span":{"begin":31,"end":33},"obj":"IN"},{"id":"T21146","span":{"begin":26,"end":30},"obj":"JJ"},{"id":"T21145","span":{"begin":24,"end":25},"obj":","},{"id":"T21144","span":{"begin":17,"end":24},"obj":"NNS"},{"id":"T21143","span":{"begin":0,"end":16},"obj":"JJ"}],"relations":[{"id":"R15004","pred":"amod","subj":"T21143","obj":"T21144"},{"id":"R15005","pred":"nsubj","subj":"T21144","obj":"T21153"},{"id":"R15006","pred":"punct","subj":"T21145","obj":"T21144"},{"id":"R15007","pred":"amod","subj":"T21146","obj":"T21147"},{"id":"R15008","pred":"prep","subj":"T21147","obj":"T21144"},{"id":"R15009","pred":"det","subj":"T21148","obj":"T21151"},{"id":"R15010","pred":"amod","subj":"T21149","obj":"T21151"},{"id":"R15011","pred":"compound","subj":"T21150","obj":"T21151"},{"id":"R15012","pred":"pobj","subj":"T21151","obj":"T21147"},{"id":"R15013","pred":"punct","subj":"T21152","obj":"T21144"},{"id":"R15014","pred":"ROOT","subj":"T21153","obj":"T21153"},{"id":"R15015","pred":"dobj","subj":"T21154","obj":"T21153"},{"id":"R15016","pred":"aux","subj":"T21155","obj":"T21156"},{"id":"R15017","pred":"advcl","subj":"T21156","obj":"T21153"},{"id":"R15018","pred":"det","subj":"T21157","obj":"T21159"},{"id":"R15019","pred":"amod","subj":"T21158","obj":"T21159"},{"id":"R15020","pred":"dobj","subj":"T21159","obj":"T21156"},{"id":"R15021","pred":"nsubj","subj":"T21160","obj":"T21161"},{"id":"R15022","pred":"relcl","subj":"T21161","obj":"T21159"},{"id":"R15023","pred":"amod","subj":"T21162","obj":"T21163"},{"id":"R15024","pred":"dobj","subj":"T21163","obj":"T21161"},{"id":"R15025","pred":"prep","subj":"T21164","obj":"T21163"},{"id":"R15026","pred":"det","subj":"T21165","obj":"T21167"},{"id":"R15027","pred":"amod","subj":"T21166","obj":"T21167"},{"id":"R15028","pred":"pobj","subj":"T21167","obj":"T21164"},{"id":"R15029","pred":"conj","subj":"T21168","obj":"T21163"},{"id":"R15030","pred":"punct","subj":"T21169","obj":"T21153"}],"text":"Pro-inflammatory stimuli, such as the bacterial endotoxin LPS, stimulate macrophages to mount an anti-pathogenic response which involves massive induction of the pro-survival factor SerpinB2."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T18970","span":{"begin":182,"end":190},"obj":"NN"},{"id":"T18969","span":{"begin":175,"end":181},"obj":"NN"},{"id":"T18968","span":{"begin":162,"end":174},"obj":"JJ"},{"id":"T18967","span":{"begin":158,"end":161},"obj":"DT"},{"id":"T18966","span":{"begin":155,"end":157},"obj":"IN"},{"id":"T18965","span":{"begin":145,"end":154},"obj":"NN"},{"id":"T18964","span":{"begin":137,"end":144},"obj":"JJ"},{"id":"T18963","span":{"begin":128,"end":136},"obj":"VB"},{"id":"T18962","span":{"begin":122,"end":127},"obj":"WDT"},{"id":"T18961","span":{"begin":113,"end":121},"obj":"NN"},{"id":"T18960","span":{"begin":97,"end":112},"obj":"JJ"},{"id":"T18959","span":{"begin":94,"end":96},"obj":"DT"},{"id":"T18958","span":{"begin":88,"end":93},"obj":"VB"},{"id":"T18957","span":{"begin":85,"end":87},"obj":"TO"},{"id":"T18956","span":{"begin":73,"end":84},"obj":"NN"},{"id":"T18955","span":{"begin":63,"end":72},"obj":"VB"},{"id":"T18954","span":{"begin":61,"end":62},"obj":"-COMMA-"},{"id":"T18953","span":{"begin":58,"end":61},"obj":"NN"},{"id":"T18952","span":{"begin":48,"end":57},"obj":"NN"},{"id":"T18951","span":{"begin":38,"end":47},"obj":"JJ"},{"id":"T18950","span":{"begin":34,"end":37},"obj":"DT"},{"id":"T18949","span":{"begin":31,"end":33},"obj":"IN"},{"id":"T18948","span":{"begin":26,"end":30},"obj":"JJ"},{"id":"T18947","span":{"begin":24,"end":25},"obj":"-COMMA-"},{"id":"T18946","span":{"begin":17,"end":24},"obj":"NN"},{"id":"T18945","span":{"begin":0,"end":16},"obj":"JJ"}],"relations":[{"id":"R13405","pred":"arg1Of","subj":"T18946","obj":"T18945"},{"id":"R13406","pred":"arg1Of","subj":"T18946","obj":"T18947"},{"id":"R13407","pred":"arg1Of","subj":"T18946","obj":"T18949"},{"id":"R13408","pred":"arg1Of","subj":"T18946","obj":"T18955"},{"id":"R13409","pred":"arg1Of","subj":"T18949","obj":"T18948"},{"id":"R13410","pred":"arg2Of","subj":"T18953","obj":"T18949"},{"id":"R13411","pred":"arg1Of","subj":"T18953","obj":"T18950"},{"id":"R13412","pred":"arg1Of","subj":"T18953","obj":"T18951"},{"id":"R13413","pred":"arg1Of","subj":"T18953","obj":"T18952"},{"id":"R13414","pred":"arg1Of","subj":"T18955","obj":"T18954"},{"id":"R13415","pred":"arg2Of","subj":"T18956","obj":"T18955"},{"id":"R13416","pred":"arg1Of","subj":"T18956","obj":"T18958"},{"id":"R13417","pred":"arg3Of","subj":"T18958","obj":"T18955"},{"id":"R13418","pred":"arg1Of","subj":"T18958","obj":"T18957"},{"id":"R13419","pred":"arg2Of","subj":"T18961","obj":"T18958"},{"id":"R13420","pred":"arg1Of","subj":"T18961","obj":"T18959"},{"id":"R13421","pred":"arg1Of","subj":"T18961","obj":"T18960"},{"id":"R13422","pred":"arg1Of","subj":"T18961","obj":"T18962"},{"id":"R13423","pred":"arg1Of","subj":"T18961","obj":"T18963"},{"id":"R13424","pred":"arg2Of","subj":"T18965","obj":"T18963"},{"id":"R13425","pred":"arg1Of","subj":"T18965","obj":"T18964"},{"id":"R13426","pred":"arg1Of","subj":"T18965","obj":"T18966"},{"id":"R13427","pred":"arg2Of","subj":"T18970","obj":"T18966"},{"id":"R13428","pred":"arg1Of","subj":"T18970","obj":"T18967"},{"id":"R13429","pred":"arg1Of","subj":"T18970","obj":"T18968"},{"id":"R13430","pred":"arg1Of","subj":"T18970","obj":"T18969"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"Pro-inflammatory stimuli, such as the bacterial endotoxin LPS, stimulate macrophages to mount an anti-pathogenic response which involves massive induction of the pro-survival factor SerpinB2."}

    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T18717","span":{"begin":182,"end":190},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Pro-inflammatory stimuli, such as the bacterial endotoxin LPS, stimulate macrophages to mount an anti-pathogenic response which involves massive induction of the pro-survival factor SerpinB2."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T20208","span":{"begin":182,"end":190},"obj":"http://www.uniprot.org/uniprot/P05120"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Pro-inflammatory stimuli, such as the bacterial endotoxin LPS, stimulate macrophages to mount an anti-pathogenic response which involves massive induction of the pro-survival factor SerpinB2."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T18795","span":{"begin":162,"end":174},"obj":"http://purl.obolibrary.org/obo/GO_0043066"}],"text":"Pro-inflammatory stimuli, such as the bacterial endotoxin LPS, stimulate macrophages to mount an anti-pathogenic response which involves massive induction of the pro-survival factor SerpinB2."}

    sentences

    {"project":"sentences","denotations":[{"id":"T18481","span":{"begin":0,"end":191},"obj":"Sentence"},{"id":"T246","span":{"begin":0,"end":191},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Pro-inflammatory stimuli, such as the bacterial endotoxin LPS, stimulate macrophages to mount an anti-pathogenic response which involves massive induction of the pro-survival factor SerpinB2."}

    simple1

    {"project":"simple1","denotations":[{"id":"T18854","span":{"begin":182,"end":190},"obj":"Protein"}],"text":"Pro-inflammatory stimuli, such as the bacterial endotoxin LPS, stimulate macrophages to mount an anti-pathogenic response which involves massive induction of the pro-survival factor SerpinB2."}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T20062","span":{"begin":182,"end":190},"obj":"Protein"},{"id":"T20133","span":{"begin":145,"end":154},"obj":"Positive_regulation"}],"relations":[{"id":"R14504","pred":"themeOf","subj":"T20062","obj":"T20133"}],"text":"Pro-inflammatory stimuli, such as the bacterial endotoxin LPS, stimulate macrophages to mount an anti-pathogenic response which involves massive induction of the pro-survival factor SerpinB2."}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T20584","span":{"begin":128,"end":136},"obj":"Positive_regulation"},{"id":"T20583","span":{"begin":145,"end":154},"obj":"Positive_regulation"},{"id":"T20512","span":{"begin":182,"end":190},"obj":"Protein"}],"relations":[{"id":"R14726","pred":"themeOf","subj":"T20512","obj":"T20583"},{"id":"R14780","pred":"themeOf","subj":"T20583","obj":"T20584"}],"text":"Pro-inflammatory stimuli, such as the bacterial endotoxin LPS, stimulate macrophages to mount an anti-pathogenic response which involves massive induction of the pro-survival factor SerpinB2."}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T20359","span":{"begin":137,"end":144},"obj":"Positive_regulation"},{"id":"T20358","span":{"begin":128,"end":136},"obj":"Positive_regulation"},{"id":"T20357","span":{"begin":145,"end":154},"obj":"Positive_regulation"},{"id":"T20286","span":{"begin":182,"end":190},"obj":"Protein"}],"relations":[{"id":"R14667","pred":"themeOf","subj":"T20357","obj":"T20358"},{"id":"R14668","pred":"themeOf","subj":"T20357","obj":"T20359"},{"id":"R14614","pred":"themeOf","subj":"T20286","obj":"T20357"}],"text":"Pro-inflammatory stimuli, such as the bacterial endotoxin LPS, stimulate macrophages to mount an anti-pathogenic response which involves massive induction of the pro-survival factor SerpinB2."}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T21114","span":{"begin":137,"end":190},"obj":"Positive_regulation"},{"id":"T21113","span":{"begin":137,"end":190},"obj":"Gene_expression"},{"id":"T21078","span":{"begin":73,"end":84},"obj":"Entity"},{"id":"T21003","span":{"begin":155,"end":190},"obj":"Protein"},{"id":"T20987","span":{"begin":34,"end":61},"obj":"Entity"}],"relations":[{"id":"R14958","pred":"themeOf","subj":"T21003","obj":"T21113"},{"id":"R14959","pred":"themeOf","subj":"T21003","obj":"T21114"}],"text":"Pro-inflammatory stimuli, such as the bacterial endotoxin LPS, stimulate macrophages to mount an anti-pathogenic response which involves massive induction of the pro-survival factor SerpinB2."}

    testone

    {"project":"testone","denotations":[{"id":"T18165","span":{"begin":182,"end":190},"obj":"Protein"}],"text":"Pro-inflammatory stimuli, such as the bacterial endotoxin LPS, stimulate macrophages to mount an anti-pathogenic response which involves massive induction of the pro-survival factor SerpinB2."}

    test3

    {"project":"test3","denotations":[{"id":"T18282","span":{"begin":182,"end":190},"obj":"Protein"},{"id":"T18353","span":{"begin":182,"end":190},"obj":"Protein"}],"text":"Pro-inflammatory stimuli, such as the bacterial endotoxin LPS, stimulate macrophages to mount an anti-pathogenic response which involves massive induction of the pro-survival factor SerpinB2."}