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PMC:3589482 / 3829-4116 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2919 286-287 . denotes .
T2918 285-286 NNP denotes ]
T2917 283-285 CD denotes 33
T2916 282-283 NNP denotes [
T2915 273-281 NNS denotes pathways
T2914 266-272 NN denotes kinase
T2913 265-266 : denotes -
T2912 264-265 -RRB- denotes )
T2911 261-264 NN denotes PI3
T2910 260-261 -LRB- denotes (
T2909 259-260 CD denotes 3
T2908 242-258 NN denotes phosphoinositide
T2907 235-241 CC denotes and/or
T2906 233-234 -RRB- denotes )
T2905 229-233 NNP denotes MAPK
T2904 228-229 -LRB- denotes (
T2903 221-227 NN denotes kinase
T2902 213-220 NN denotes protein
T2901 195-212 JJ denotes mitogen-activated
T2900 193-194 , denotes ,
T2899 192-193 -RRB- denotes )
T2898 187-192 NNP denotes NF-κB
T2897 186-187 -LRB- denotes (
T2896 176-185 NNP denotes factor-κB
T2895 168-175 JJ denotes nuclear
T2894 164-167 DT denotes the
T2893 161-163 TO denotes to
T2892 153-160 NNS denotes signals
T2891 142-152 VBG denotes generating
T2890 140-141 , denotes ,
T2889 133-140 NNS denotes kinases
T2888 125-132 NN denotes protein
T2887 122-124 IN denotes of
T2886 111-121 NN denotes activation
T2885 107-110 DT denotes the
T2884 103-106 CC denotes and
T2883 93-102 NNS denotes molecules
T2882 85-92 NN denotes adaptor
T2881 82-84 IN denotes of
T2880 70-81 NN denotes recruitment
T2879 66-69 DT denotes the
T2878 63-65 TO denotes to
T2877 57-62 VBZ denotes leads
T2876 45-56 NNS denotes macrophages
T2875 42-44 IN denotes of
T2874 34-41 NN denotes surface
T2873 30-33 DT denotes the
T2872 27-29 IN denotes on
T2871 22-26 CD denotes TLR4
T2870 19-21 TO denotes to
T2869 15-18 NNP denotes LPS
T2868 12-14 IN denotes of
T2867 4-11 JJ denotes binding
T2866 0-3 DT denotes The
R1970 T2866 T2867 det The,binding
R1972 T2867 T2877 nsubj binding,leads
R1974 T2868 T2867 prep of,binding
R1976 T2869 T2868 pobj LPS,of
R1977 T2870 T2867 prep to,binding
R1978 T2871 T2870 pobj TLR4,to
R1980 T2872 T2867 prep on,binding
R1981 T2873 T2874 det the,surface
R1982 T2874 T2872 pobj surface,on
R1984 T2875 T2874 prep of,surface
R1985 T2876 T2875 pobj macrophages,of
R1986 T2877 T2877 ROOT leads,leads
R1987 T2878 T2877 prep to,leads
R1989 T2879 T2880 det the,recruitment
R1990 T2880 T2878 pobj recruitment,to
R1991 T2881 T2880 prep of,recruitment
R1993 T2882 T2883 compound adaptor,molecules
R1994 T2883 T2881 pobj molecules,of
R1996 T2884 T2883 cc and,molecules
R1997 T2885 T2886 det the,activation
R1998 T2886 T2880 conj activation,recruitment
R1999 T2887 T2886 prep of,activation
R2001 T2888 T2889 compound protein,kinases
R2002 T2889 T2887 pobj kinases,of
R2004 T2890 T2877 punct ",",leads
R2005 T2891 T2877 advcl generating,leads
R2006 T2892 T2891 dobj signals,generating
R2008 T2893 T2892 prep to,signals
R2009 T2894 T2896 det the,factor-κB
R2010 T2895 T2896 amod nuclear,factor-κB
R2011 T2896 T2893 pobj factor-κB,to
R2012 T2897 T2896 punct (,factor-κB
R2013 T2898 T2896 appos NF-κB,factor-κB
R2015 T2899 T2896 punct ),factor-κB
R2016 T2900 T2896 punct ",",factor-κB
R2017 T2901 T2902 amod mitogen-activated,protein
R2018 T2902 T2903 compound protein,kinase
R2020 T2903 T2915 nmod kinase,pathways
R2021 T2904 T2903 punct (,kinase
R2023 T2905 T2903 appos MAPK,kinase
R2024 T2906 T2905 punct ),MAPK
R2025 T2907 T2903 cc and/or,kinase
R2027 T2908 T2903 conj phosphoinositide,kinase
R2028 T2909 T2908 nummod 3,phosphoinositide
R2029 T2910 T2908 punct (,phosphoinositide
R2030 T2911 T2908 appos PI3,phosphoinositide
R2032 T2912 T2908 punct ),phosphoinositide
R2033 T2913 T2914 punct -,kinase
R2034 T2914 T2915 compound kinase,pathways
R2036 T2915 T2892 appos pathways,signals
R2037 T2916 T2918 nmod [,]
R2038 T2917 T2918 nummod 33,]
R2040 T2918 T2915 appos ],pathways
R2041 T2919 T2877 punct .,leads

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1844 285-286 -RRB- denotes ]
T1843 283-285 CD denotes 33
T1842 282-283 -LRB- denotes [
T1841 273-281 NN denotes pathways
T1840 265-272 NN denotes -kinase
T1839 264-265 -RRB- denotes )
T1838 261-264 NN denotes PI3
T1837 260-261 -LRB- denotes (
T1836 259-260 CD denotes 3
T1835 242-258 NN denotes phosphoinositide
T1834 235-241 CC denotes and/or
T1833 233-234 -RRB- denotes )
T1832 229-233 NN denotes MAPK
T1831 228-229 -LRB- denotes (
T1830 221-227 NN denotes kinase
T1829 213-220 NN denotes protein
T1828 195-212 JJ denotes mitogen-activated
T1827 193-194 -COMMA- denotes ,
T1826 192-193 -RRB- denotes )
T1825 187-192 NN denotes NF-κB
T1824 186-187 -LRB- denotes (
T1823 176-185 NN denotes factor-κB
T1822 168-175 JJ denotes nuclear
T1821 164-167 DT denotes the
T1820 161-163 TO denotes to
T1819 153-160 NN denotes signals
T1818 142-152 VB denotes generating
T1817 140-141 -COMMA- denotes ,
T1816 133-140 NN denotes kinases
T1815 125-132 NN denotes protein
T1814 122-124 IN denotes of
T1813 111-121 NN denotes activation
T1812 107-110 DT denotes the
T1811 103-106 CC denotes and
T1810 93-102 NN denotes molecules
T1809 85-92 NN denotes adaptor
T1808 82-84 IN denotes of
T1807 70-81 NN denotes recruitment
T1806 66-69 DT denotes the
T1805 63-65 TO denotes to
T1804 57-62 VB denotes leads
T1803 45-56 NN denotes macrophages
T1802 42-44 IN denotes of
T1801 34-41 NN denotes surface
T1800 30-33 DT denotes the
T1799 27-29 IN denotes on
T1798 22-26 NN denotes TLR4
T1797 19-21 TO denotes to
T1796 15-18 NN denotes LPS
T1795 12-14 IN denotes of
T1794 4-11 NN denotes binding
T1793 0-3 DT denotes The
R1199 T1794 T1793 arg1Of binding,The
R1200 T1794 T1795 arg1Of binding,of
R1201 T1794 T1797 arg1Of binding,to
R1202 T1794 T1799 arg1Of binding,on
R1203 T1794 T1804 arg1Of binding,leads
R1204 T1796 T1795 arg2Of LPS,of
R1205 T1798 T1797 arg2Of TLR4,to
R1206 T1801 T1799 arg2Of surface,on
R1207 T1801 T1800 arg1Of surface,the
R1208 T1801 T1802 arg1Of surface,of
R1209 T1803 T1802 arg2Of macrophages,of
R1210 T1804 T1805 arg1Of leads,to
R1211 T1804 T1842 arg1Of leads,[
R1212 T1807 T1806 arg1Of recruitment,the
R1213 T1807 T1808 arg1Of recruitment,of
R1214 T1807 T1811 arg1Of recruitment,and
R1215 T1810 T1808 arg2Of molecules,of
R1216 T1810 T1809 arg1Of molecules,adaptor
R1217 T1811 T1827 arg1Of and,","
R1218 T1813 T1811 arg2Of activation,and
R1219 T1813 T1812 arg1Of activation,the
R1220 T1813 T1814 arg1Of activation,of
R1221 T1816 T1814 arg2Of kinases,of
R1222 T1816 T1815 arg1Of kinases,protein
R1223 T1816 T1817 arg1Of kinases,","
R1224 T1816 T1818 arg1Of kinases,generating
R1225 T1818 T1820 arg1Of generating,to
R1226 T1819 T1818 arg2Of signals,generating
R1227 T1823 T1820 arg2Of factor-κB,to
R1228 T1823 T1821 arg1Of factor-κB,the
R1229 T1823 T1822 arg1Of factor-κB,nuclear
R1230 T1823 T1824 arg1Of factor-κB,(
R1231 T1825 T1824 arg2Of NF-κB,(
R1232 T1826 T1824 arg3Of ),(
R1233 T1827 T1805 arg2Of ",",to
R1234 T1830 T1828 arg1Of kinase,mitogen-activated
R1235 T1830 T1829 arg1Of kinase,protein
R1236 T1830 T1831 arg1Of kinase,(
R1237 T1830 T1834 arg1Of kinase,and/or
R1238 T1832 T1831 arg2Of MAPK,(
R1239 T1833 T1831 arg3Of ),(
R1240 T1835 T1834 arg2Of phosphoinositide,and/or
R1241 T1835 T1836 arg1Of phosphoinositide,3
R1242 T1838 T1837 arg2Of PI3,(
R1243 T1839 T1837 arg3Of ),(
R1244 T1841 T1827 arg2Of pathways,","
R1245 T1841 T1830 arg1Of pathways,kinase
R1246 T1841 T1835 arg1Of pathways,phosphoinositide
R1247 T1841 T1837 arg1Of pathways,(
R1248 T1841 T1840 arg1Of pathways,-kinase
R1249 T1843 T1842 arg2Of 33,[
R1250 T1844 T1842 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1310 22-26 Protein denotes TLR4

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2122 22-26 http://www.uniprot.org/uniprot/O00206 denotes TLR4

GO-BP

Id Subject Object Predicate Lexical cue
T1367 111-140 http://purl.obolibrary.org/obo/GO_0032111 denotes activation of protein kinases
T1366 203-227 http://purl.obolibrary.org/obo/GO_0030295 denotes activated protein kinase
T1365 111-140 http://purl.obolibrary.org/obo/GO_0030295 denotes activation of protein kinases
T1364 203-227 http://purl.obolibrary.org/obo/GO_0032147 denotes activated protein kinase
T1363 111-140 http://purl.obolibrary.org/obo/GO_0032147 denotes activation of protein kinases
T1362 203-227 http://purl.obolibrary.org/obo/GO_0034199 denotes activated protein kinase
T1361 111-140 http://purl.obolibrary.org/obo/GO_0034199 denotes activation of protein kinases
T1355 153-160 http://purl.obolibrary.org/obo/GO_0023052 denotes signals
T1369 229-233 http://purl.obolibrary.org/obo/GO_0004707 denotes MAPK
T1368 203-227 http://purl.obolibrary.org/obo/GO_0032111 denotes activated protein kinase

GO-MF

Id Subject Object Predicate Lexical cue
T1384 229-233 http://purl.obolibrary.org/obo/GO_0004707 denotes MAPK
T1383 203-227 http://purl.obolibrary.org/obo/GO_0030295 denotes activated protein kinase
T1382 111-140 http://purl.obolibrary.org/obo/GO_0030295 denotes activation of protein kinases
T1381 4-18 http://purl.obolibrary.org/obo/GO_0001530 denotes binding of LPS
T1379 4-11 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T1216 0-287 Sentence denotes The binding of LPS to TLR4 on the surface of macrophages leads to the recruitment of adaptor molecules and the activation of protein kinases, generating signals to the nuclear factor-κB (NF-κB), mitogen-activated protein kinase (MAPK) and/or phosphoinositide 3(PI3)-kinase pathways [33].
T26 0-287 Sentence denotes The binding of LPS to TLR4 on the surface of macrophages leads to the recruitment of adaptor molecules and the activation of protein kinases, generating signals to the nuclear factor-κB (NF-κB), mitogen-activated protein kinase (MAPK) and/or phosphoinositide 3(PI3)-kinase pathways [33].

simple1

Id Subject Object Predicate Lexical cue
T1408 22-26 Protein denotes TLR4

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2066 22-26 Protein denotes TLR4
T2087 57-62 Positive_regulation denotes leads
T2086 4-11 Binding denotes binding
R1454 T2066 T2086 themeOf TLR4,binding
R1468 T2086 T2087 themeOf binding,leads

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2225 22-26 Protein denotes TLR4
T2246 57-62 Positive_regulation denotes leads
T2245 4-11 Binding denotes binding
R1515 T2225 T2245 themeOf TLR4,binding
R1542 T2245 T2246 themeOf binding,leads

DLUT931

Id Subject Object Predicate Lexical cue
T2166 57-62 Positive_regulation denotes leads
T2165 4-11 Binding denotes binding
T2144 22-26 Protein denotes TLR4
R1482 T2144 T2165 themeOf TLR4,binding
R1494 T2165 T2166 themeOf binding,leads

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2477 195-234 Positive_regulation denotes mitogen-activated protein kinase (MAPK)
T2474 66-102 Binding denotes the recruitment of adaptor molecules
T2473 0-56 Binding denotes The binding of LPS to TLR4 on the surface of macrophages
T2466 107-140 Positive_regulation denotes the activation of protein kinases
T2460 19-26 Protein denotes to TLR4
T2459 213-234 Protein denotes protein kinase (MAPK)
T2457 42-56 Entity denotes of macrophages
T2451 122-140 Protein denotes of protein kinases
T2435 195-202 Entity denotes mitogen
T2426 242-272 Entity denotes phosphoinositide 3(PI3)-kinase
T2424 261-264 Protein denotes PI3
T2403 82-102 Entity denotes of adaptor molecules
T2391 242-272 Protein denotes phosphoinositide 3(PI3)-kinase
T2385 12-18 Entity denotes of LPS
T2372 187-192 Protein denotes NF-κB
T2370 229-233 Protein denotes MAPK
R1649 T2459 T2477 themeOf protein kinase (MAPK),mitogen-activated protein kinase (MAPK)
R1651 T2460 T2473 themeOf to TLR4,The binding of LPS to TLR4 on the surface of macrophages
R1606 T2385 T2473 themeOf of LPS,The binding of LPS to TLR4 on the surface of macrophages
R1611 T2403 T2474 themeOf of adaptor molecules,the recruitment of adaptor molecules
R1634 T2435 T2477 causeOf mitogen,mitogen-activated protein kinase (MAPK)
R1644 T2451 T2466 themeOf of protein kinases,the activation of protein kinases

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T2284 4-11 Binding denotes binding
T2283 229-233 Protein denotes MAPK
T2282 195-227 Protein denotes mitogen-activated protein kinase
T2281 187-192 Protein denotes NF-κB
T2280 168-185 Protein denotes nuclear factor-κB
T2279 22-26 Protein denotes TLR4
R1543 T2279 T2284 themeOf TLR4,binding

testone

Id Subject Object Predicate Lexical cue
T1124 70-81 Binding denotes recruitment
T1123 4-11 Binding denotes binding
T1105 22-26 Protein denotes TLR4
R747 T1105 T1123 themeOf TLR4,binding

test3

Id Subject Object Predicate Lexical cue
T1174 22-26 Protein denotes TLR4
T1173 4-11 Binding denotes binding
T1146 22-26 Protein denotes TLR4
R758 T1174 T1173 themeOf TLR4,binding