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PMC:3589482 / 37660-37933 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T26917 272-273 . denotes .
T26916 269-272 NNS denotes hrs
T26915 267-268 CD denotes 4
T26914 263-266 IN denotes for
T26913 259-262 NNP denotes LPS
T26912 254-258 IN denotes with
T26911 243-253 VBN denotes stimulated
T26910 239-242 CC denotes and
T26909 237-238 , denotes ,
T26908 229-237 NNS denotes plasmids
T26907 220-228 NN denotes reporter
T26906 204-219 JJ denotes β-galactosidase
T26905 200-203 CC denotes and
T26904 191-199 NN denotes reporter
T26903 171-190 JJ denotes promoter-luciferase
T26902 162-170 NNP denotes SerpinB2
T26901 152-161 NNP denotes pGLmP-539
T26900 148-151 DT denotes the
T26899 143-147 IN denotes with
T26898 137-142 IN denotes along
T26897 135-136 , denotes ,
T26896 128-135 NNS denotes mutants
T26895 111-127 NN denotes phospho-acceptor
T26894 109-110 NN denotes β
T26893 108-109 : denotes -
T26892 103-108 NNP denotes C/EBP
T26891 93-102 VBN denotes indicated
T26890 89-92 DT denotes the
T26889 86-88 CC denotes or
T26888 84-85 NN denotes β
T26887 83-84 : denotes -
T26886 78-83 NNP denotes C/EBP
T26885 68-77 JJ denotes wild-type
T26884 59-67 VBG denotes encoding
T26883 50-58 NNS denotes plasmids
T26882 39-49 NN denotes expression
T26881 34-38 IN denotes with
T26880 19-33 VBN denotes co-transfected
T26879 14-18 VBD denotes were
T26878 9-13 NNS denotes MEFs
T26877 7-8 CD denotes −
T26876 6-7 VBD denotes /
T26875 5-6 NNP denotes −
T26874 0-5 NNP denotes Cebpb
R19012 T26874 T26875 compound Cebpb,−
R19013 T26875 T26876 nsubj −,/
R19014 T26876 T26876 ROOT /,/
R19015 T26877 T26878 nummod −,MEFs
R19016 T26878 T26880 nsubjpass MEFs,co-transfected
R19017 T26879 T26880 auxpass were,co-transfected
R19018 T26880 T26876 ccomp co-transfected,/
R19019 T26881 T26880 prep with,co-transfected
R19020 T26882 T26883 compound expression,plasmids
R19021 T26883 T26884 nsubj plasmids,encoding
R19022 T26884 T26881 pcomp encoding,with
R19023 T26885 T26888 amod wild-type,β
R19024 T26886 T26888 compound C/EBP,β
R19025 T26887 T26888 punct -,β
R19026 T26888 T26884 dobj β,encoding
R19027 T26889 T26888 cc or,β
R19028 T26890 T26896 det the,mutants
R19029 T26891 T26896 amod indicated,mutants
R19030 T26892 T26896 nmod C/EBP,mutants
R19031 T26893 T26894 punct -,β
R19032 T26894 T26896 nmod β,mutants
R19033 T26895 T26896 compound phospho-acceptor,mutants
R19034 T26896 T26888 conj mutants,β
R19035 T26897 T26896 punct ",",mutants
R19036 T26898 T26884 prep along,encoding
R19037 T26899 T26898 prep with,along
R19038 T26900 T26904 det the,reporter
R19039 T26901 T26902 compound pGLmP-539,SerpinB2
R19040 T26902 T26904 nmod SerpinB2,reporter
R19041 T26903 T26904 amod promoter-luciferase,reporter
R19042 T26904 T26899 pobj reporter,with
R19043 T26905 T26904 cc and,reporter
R19044 T26906 T26907 amod β-galactosidase,reporter
R19045 T26907 T26904 conj reporter,reporter
R19046 T26908 T26904 conj plasmids,reporter
R19047 T26909 T26908 punct ",",plasmids
R19048 T26910 T26880 cc and,co-transfected
R19049 T26911 T26880 conj stimulated,co-transfected
R19050 T26912 T26911 prep with,stimulated
R19051 T26913 T26912 pobj LPS,with
R19052 T26914 T26911 prep for,stimulated
R19053 T26915 T26916 nummod 4,hrs
R19054 T26916 T26914 pobj hrs,for
R19055 T26917 T26876 punct .,/

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T26358 269-272 NN denotes hrs
T26357 267-268 CD denotes 4
T26356 263-266 IN denotes for
T26355 259-262 NN denotes LPS
T26354 254-258 IN denotes with
T26353 243-253 VB denotes stimulated
T26352 239-242 CC denotes and
T26351 237-238 -COMMA- denotes ,
T26350 229-237 NN denotes plasmids
T26349 220-228 NN denotes reporter
T26348 204-219 JJ denotes β-galactosidase
T26347 200-203 CC denotes and
T26346 191-199 NN denotes reporter
T26345 171-190 NN denotes promoter-luciferase
T26344 162-170 NN denotes SerpinB2
T26343 152-161 NN denotes pGLmP-539
T26342 148-151 DT denotes the
T26341 143-147 IN denotes with
T26340 137-142 IN denotes along
T26339 135-136 -COMMA- denotes ,
T26338 128-135 NN denotes mutants
T26337 111-127 NN denotes phospho-acceptor
T26336 103-110 NN denotes C/EBP-β
T26335 93-102 VB denotes indicated
T26334 89-92 DT denotes the
T26333 86-88 CC denotes or
T26332 78-85 NN denotes C/EBP-β
T26331 68-77 JJ denotes wild-type
T26330 59-67 VB denotes encoding
T26329 50-58 NN denotes plasmids
T26328 39-49 NN denotes expression
T26327 34-38 IN denotes with
T26326 19-33 VB denotes co-transfected
T26325 14-18 VB denotes were
T26324 9-13 NN denotes MEFs
T26323 0-8 NN denotes Cebpb−/−
R18690 T26324 T26323 arg1Of MEFs,Cebpb−/−
R18691 T26324 T26325 arg1Of MEFs,were
R18692 T26324 T26326 arg2Of MEFs,co-transfected
R18693 T26324 T26353 arg2Of MEFs,stimulated
R18694 T26326 T26327 arg1Of co-transfected,with
R18695 T26326 T26352 arg1Of co-transfected,and
R18696 T26329 T26328 arg1Of plasmids,expression
R18697 T26329 T26330 arg1Of plasmids,encoding
R18698 T26329 T26347 arg1Of plasmids,and
R18699 T26332 T26331 arg1Of C/EBP-β,wild-type
R18700 T26332 T26333 arg1Of C/EBP-β,or
R18701 T26333 T26330 arg2Of or,encoding
R18702 T26338 T26333 arg2Of mutants,or
R18703 T26338 T26334 arg1Of mutants,the
R18704 T26338 T26335 arg2Of mutants,indicated
R18705 T26338 T26336 arg1Of mutants,C/EBP-β
R18706 T26338 T26337 arg1Of mutants,phospho-acceptor
R18707 T26338 T26339 arg1Of mutants,","
R18708 T26338 T26340 arg1Of mutants,along
R18709 T26340 T26341 arg1Of along,with
R18710 T26346 T26341 arg2Of reporter,with
R18711 T26346 T26342 arg1Of reporter,the
R18712 T26346 T26343 arg1Of reporter,pGLmP-539
R18713 T26346 T26344 arg1Of reporter,SerpinB2
R18714 T26346 T26345 arg1Of reporter,promoter-luciferase
R18715 T26347 T26327 arg2Of and,with
R18716 T26350 T26347 arg2Of plasmids,and
R18717 T26350 T26348 arg1Of plasmids,β-galactosidase
R18718 T26350 T26349 arg1Of plasmids,reporter
R18719 T26352 T26325 arg2Of and,were
R18720 T26352 T26351 arg1Of and,","
R18721 T26353 T26352 arg2Of stimulated,and
R18722 T26353 T26354 arg1Of stimulated,with
R18723 T26353 T26356 arg1Of stimulated,for
R18724 T26355 T26354 arg2Of LPS,with
R18725 T26358 T26356 arg2Of hrs,for
R18726 T26358 T26357 arg1Of hrs,4

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T26152 162-199 Protein denotes SerpinB2 promoter-luciferase reporter
T26151 103-135 Protein denotes C/EBP-β phospho-acceptor mutants
T26150 78-85 Protein denotes C/EBP-β
T26149 0-5 Protein denotes Cebpb
T26153 204-228 Protein denotes β-galactosidase reporter

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T26511 180-190 http://www.uniprot.org/uniprot/P08659 denotes luciferase
T26507 162-170 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T26500 0-5 http://www.uniprot.org/uniprot/P28033 denotes Cebpb
T26494 103-110 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T26493 78-85 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β

sentences

Id Subject Object Predicate Lexical cue
T26090 0-273 Sentence denotes Cebpb−/− MEFs were co-transfected with expression plasmids encoding wild-type C/EBP-β or the indicated C/EBP-β phospho-acceptor mutants, along with the pGLmP-539 SerpinB2 promoter-luciferase reporter and β-galactosidase reporter plasmids, and stimulated with LPS for 4 hrs.
T227 0-273 Sentence denotes Cebpb−/− MEFs were co-transfected with expression plasmids encoding wild-type C/EBP-β or the indicated C/EBP-β phospho-acceptor mutants, along with the pGLmP-539 SerpinB2 promoter-luciferase reporter and β-galactosidase reporter plasmids, and stimulated with LPS for 4 hrs.

simple1

Id Subject Object Predicate Lexical cue
T26214 204-228 Protein denotes β-galactosidase reporter
T26213 162-199 Protein denotes SerpinB2 promoter-luciferase reporter
T26212 103-135 Protein denotes C/EBP-β phospho-acceptor mutants
T26211 78-85 Protein denotes C/EBP-β
T26210 0-5 Protein denotes Cebpb

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T26487 19-33 Gene_expression denotes co-transfected
T26486 243-253 Positive_regulation denotes stimulated
T26485 39-49 Gene_expression denotes expression
T26472 204-228 Protein denotes β-galactosidase reporter
T26471 162-199 Protein denotes SerpinB2 promoter-luciferase reporter
T26470 103-135 Protein denotes C/EBP-β phospho-acceptor mutants
T26469 78-85 Protein denotes C/EBP-β
T26468 0-5 Protein denotes Cebpb
R18803 T26468 T26486 themeOf Cebpb,stimulated
R18804 T26468 T26487 themeOf Cebpb,co-transfected
R18805 T26469 T26485 themeOf C/EBP-β,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T26610 39-49 Gene_expression denotes expression
T26599 204-228 Protein denotes β-galactosidase reporter
T26598 162-199 Protein denotes SerpinB2 promoter-luciferase reporter
T26597 103-135 Protein denotes C/EBP-β phospho-acceptor mutants
T26596 78-85 Protein denotes C/EBP-β
T26595 0-5 Protein denotes Cebpb
R18838 T26596 T26610 themeOf C/EBP-β,expression

DLUT931

Id Subject Object Predicate Lexical cue
T26545 39-49 Gene_expression denotes expression
T26533 204-228 Protein denotes β-galactosidase reporter
T26532 162-199 Protein denotes SerpinB2 promoter-luciferase reporter
T26531 103-135 Protein denotes C/EBP-β phospho-acceptor mutants
T26530 78-85 Protein denotes C/EBP-β
T26529 0-5 Protein denotes Cebpb
R18815 T26529 T26545 themeOf Cebpb,expression
R18816 T26530 T26545 themeOf C/EBP-β,expression
R18817 T26531 T26545 themeOf C/EBP-β phospho-acceptor mutants,expression
R18818 T26532 T26545 themeOf SerpinB2 promoter-luciferase reporter,expression
R18819 T26533 T26545 themeOf β-galactosidase reporter,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T26741 148-199 Protein denotes the pGLmP-539 SerpinB2 promoter-luciferase reporter
T26733 9-12 Protein denotes MEF
T26731 68-85 Protein denotes wild-type C/EBP-β
T26717 259-262 Entity denotes LPS
T26715 267-272 Protein denotes 4 hrs
T26711 153-157 Protein denotes GLmP
T26705 0-6 Protein denotes Cebpb−
T26701 204-228 Protein denotes β-galactosidase reporter
T26695 103-136 Protein denotes C/EBP-β phospho-acceptor mutants,

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T26643 39-49 Gene_expression denotes expression
T26642 39-49 Gene_expression denotes expression
T26641 39-49 Gene_expression denotes expression
T26640 39-49 Gene_expression denotes expression
T26639 204-228 Protein denotes β-galactosidase reporter
T26638 180-190 Protein denotes luciferase
T26637 152-179 Protein denotes pGLmP-539 SerpinB2 promoter
T26636 103-110 Protein denotes C/EBP-β
R18851 T26636 T26640 themeOf C/EBP-β,expression
R18852 T26637 T26641 themeOf pGLmP-539 SerpinB2 promoter,expression
R18853 T26638 T26642 themeOf luciferase,expression
R18854 T26639 T26643 themeOf β-galactosidase reporter,expression

testone

Id Subject Object Predicate Lexical cue
T26016 204-228 Protein denotes β-galactosidase reporter
T26015 162-199 Protein denotes SerpinB2 promoter-luciferase reporter
T26014 103-135 Protein denotes C/EBP-β phospho-acceptor mutants
T26013 78-85 Protein denotes C/EBP-β
T26012 0-5 Protein denotes Cebpb

test3

Id Subject Object Predicate Lexical cue
T26079 204-228 Protein denotes β-galactosidase reporter
T26078 162-199 Protein denotes SerpinB2 promoter-luciferase reporter
T26077 103-135 Protein denotes C/EBP-β phospho-acceptor mutants
T26076 78-85 Protein denotes C/EBP-β
T26075 39-49 Gene_expression denotes expression
T26074 0-5 Protein denotes Cebpb
T26047 204-228 Protein denotes β-galactosidase reporter
T26046 162-199 Protein denotes SerpinB2 promoter-luciferase reporter
T26045 103-135 Protein denotes C/EBP-β phospho-acceptor mutants
T26044 78-85 Protein denotes C/EBP-β
T26043 0-5 Protein denotes Cebpb
R18570 T26076 T26075 themeOf C/EBP-β,expression