PMC:3589482 / 37660-37933 JSONTXT

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    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T26917","span":{"begin":272,"end":273},"obj":"."},{"id":"T26916","span":{"begin":269,"end":272},"obj":"NNS"},{"id":"T26915","span":{"begin":267,"end":268},"obj":"CD"},{"id":"T26914","span":{"begin":263,"end":266},"obj":"IN"},{"id":"T26913","span":{"begin":259,"end":262},"obj":"NNP"},{"id":"T26912","span":{"begin":254,"end":258},"obj":"IN"},{"id":"T26911","span":{"begin":243,"end":253},"obj":"VBN"},{"id":"T26910","span":{"begin":239,"end":242},"obj":"CC"},{"id":"T26909","span":{"begin":237,"end":238},"obj":","},{"id":"T26908","span":{"begin":229,"end":237},"obj":"NNS"},{"id":"T26907","span":{"begin":220,"end":228},"obj":"NN"},{"id":"T26906","span":{"begin":204,"end":219},"obj":"JJ"},{"id":"T26905","span":{"begin":200,"end":203},"obj":"CC"},{"id":"T26904","span":{"begin":191,"end":199},"obj":"NN"},{"id":"T26903","span":{"begin":171,"end":190},"obj":"JJ"},{"id":"T26902","span":{"begin":162,"end":170},"obj":"NNP"},{"id":"T26901","span":{"begin":152,"end":161},"obj":"NNP"},{"id":"T26900","span":{"begin":148,"end":151},"obj":"DT"},{"id":"T26899","span":{"begin":143,"end":147},"obj":"IN"},{"id":"T26898","span":{"begin":137,"end":142},"obj":"IN"},{"id":"T26897","span":{"begin":135,"end":136},"obj":","},{"id":"T26896","span":{"begin":128,"end":135},"obj":"NNS"},{"id":"T26895","span":{"begin":111,"end":127},"obj":"NN"},{"id":"T26894","span":{"begin":109,"end":110},"obj":"NN"},{"id":"T26893","span":{"begin":108,"end":109},"obj":":"},{"id":"T26892","span":{"begin":103,"end":108},"obj":"NNP"},{"id":"T26891","span":{"begin":93,"end":102},"obj":"VBN"},{"id":"T26890","span":{"begin":89,"end":92},"obj":"DT"},{"id":"T26889","span":{"begin":86,"end":88},"obj":"CC"},{"id":"T26888","span":{"begin":84,"end":85},"obj":"NN"},{"id":"T26887","span":{"begin":83,"end":84},"obj":":"},{"id":"T26886","span":{"begin":78,"end":83},"obj":"NNP"},{"id":"T26885","span":{"begin":68,"end":77},"obj":"JJ"},{"id":"T26884","span":{"begin":59,"end":67},"obj":"VBG"},{"id":"T26883","span":{"begin":50,"end":58},"obj":"NNS"},{"id":"T26882","span":{"begin":39,"end":49},"obj":"NN"},{"id":"T26881","span":{"begin":34,"end":38},"obj":"IN"},{"id":"T26880","span":{"begin":19,"end":33},"obj":"VBN"},{"id":"T26879","span":{"begin":14,"end":18},"obj":"VBD"},{"id":"T26878","span":{"begin":9,"end":13},"obj":"NNS"},{"id":"T26877","span":{"begin":7,"end":8},"obj":"CD"},{"id":"T26876","span":{"begin":6,"end":7},"obj":"VBD"},{"id":"T26875","span":{"begin":5,"end":6},"obj":"NNP"},{"id":"T26874","span":{"begin":0,"end":5},"obj":"NNP"}],"relations":[{"id":"R19012","pred":"compound","subj":"T26874","obj":"T26875"},{"id":"R19013","pred":"nsubj","subj":"T26875","obj":"T26876"},{"id":"R19014","pred":"ROOT","subj":"T26876","obj":"T26876"},{"id":"R19015","pred":"nummod","subj":"T26877","obj":"T26878"},{"id":"R19016","pred":"nsubjpass","subj":"T26878","obj":"T26880"},{"id":"R19017","pred":"auxpass","subj":"T26879","obj":"T26880"},{"id":"R19018","pred":"ccomp","subj":"T26880","obj":"T26876"},{"id":"R19019","pred":"prep","subj":"T26881","obj":"T26880"},{"id":"R19020","pred":"compound","subj":"T26882","obj":"T26883"},{"id":"R19021","pred":"nsubj","subj":"T26883","obj":"T26884"},{"id":"R19022","pred":"pcomp","subj":"T26884","obj":"T26881"},{"id":"R19023","pred":"amod","subj":"T26885","obj":"T26888"},{"id":"R19024","pred":"compound","subj":"T26886","obj":"T26888"},{"id":"R19025","pred":"punct","subj":"T26887","obj":"T26888"},{"id":"R19026","pred":"dobj","subj":"T26888","obj":"T26884"},{"id":"R19027","pred":"cc","subj":"T26889","obj":"T26888"},{"id":"R19028","pred":"det","subj":"T26890","obj":"T26896"},{"id":"R19029","pred":"amod","subj":"T26891","obj":"T26896"},{"id":"R19030","pred":"nmod","subj":"T26892","obj":"T26896"},{"id":"R19031","pred":"punct","subj":"T26893","obj":"T26894"},{"id":"R19032","pred":"nmod","subj":"T26894","obj":"T26896"},{"id":"R19033","pred":"compound","subj":"T26895","obj":"T26896"},{"id":"R19034","pred":"conj","subj":"T26896","obj":"T26888"},{"id":"R19035","pred":"punct","subj":"T26897","obj":"T26896"},{"id":"R19036","pred":"prep","subj":"T26898","obj":"T26884"},{"id":"R19037","pred":"prep","subj":"T26899","obj":"T26898"},{"id":"R19038","pred":"det","subj":"T26900","obj":"T26904"},{"id":"R19039","pred":"compound","subj":"T26901","obj":"T26902"},{"id":"R19040","pred":"nmod","subj":"T26902","obj":"T26904"},{"id":"R19041","pred":"amod","subj":"T26903","obj":"T26904"},{"id":"R19042","pred":"pobj","subj":"T26904","obj":"T26899"},{"id":"R19043","pred":"cc","subj":"T26905","obj":"T26904"},{"id":"R19044","pred":"amod","subj":"T26906","obj":"T26907"},{"id":"R19045","pred":"conj","subj":"T26907","obj":"T26904"},{"id":"R19046","pred":"conj","subj":"T26908","obj":"T26904"},{"id":"R19047","pred":"punct","subj":"T26909","obj":"T26908"},{"id":"R19048","pred":"cc","subj":"T26910","obj":"T26880"},{"id":"R19049","pred":"conj","subj":"T26911","obj":"T26880"},{"id":"R19050","pred":"prep","subj":"T26912","obj":"T26911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    pmc-enju-pas

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    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T26152","span":{"begin":162,"end":199},"obj":"Protein"},{"id":"T26151","span":{"begin":103,"end":135},"obj":"Protein"},{"id":"T26150","span":{"begin":78,"end":85},"obj":"Protein"},{"id":"T26149","span":{"begin":0,"end":5},"obj":"Protein"},{"id":"T26153","span":{"begin":204,"end":228},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Cebpb−/− MEFs were co-transfected with expression plasmids encoding wild-type C/EBP-β or the indicated C/EBP-β phospho-acceptor mutants, along with the pGLmP-539 SerpinB2 promoter-luciferase reporter and β-galactosidase reporter plasmids, and stimulated with LPS for 4 hrs."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T26511","span":{"begin":180,"end":190},"obj":"http://www.uniprot.org/uniprot/P08659"},{"id":"T26507","span":{"begin":162,"end":170},"obj":"http://www.uniprot.org/uniprot/P05120"},{"id":"T26500","span":{"begin":0,"end":5},"obj":"http://www.uniprot.org/uniprot/P28033"},{"id":"T26494","span":{"begin":103,"end":110},"obj":"http://www.uniprot.org/uniprot/P28033"},{"id":"T26493","span":{"begin":78,"end":85},"obj":"http://www.uniprot.org/uniprot/P28033"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Cebpb−/− MEFs were co-transfected with expression plasmids encoding wild-type C/EBP-β or the indicated C/EBP-β phospho-acceptor mutants, along with the pGLmP-539 SerpinB2 promoter-luciferase reporter and β-galactosidase reporter plasmids, and stimulated with LPS for 4 hrs."}

    sentences

    {"project":"sentences","denotations":[{"id":"T26090","span":{"begin":0,"end":273},"obj":"Sentence"},{"id":"T227","span":{"begin":0,"end":273},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Cebpb−/− MEFs were co-transfected with expression plasmids encoding wild-type C/EBP-β or the indicated C/EBP-β phospho-acceptor mutants, along with the pGLmP-539 SerpinB2 promoter-luciferase reporter and β-galactosidase reporter plasmids, and stimulated with LPS for 4 hrs."}

    simple1

    {"project":"simple1","denotations":[{"id":"T26214","span":{"begin":204,"end":228},"obj":"Protein"},{"id":"T26213","span":{"begin":162,"end":199},"obj":"Protein"},{"id":"T26212","span":{"begin":103,"end":135},"obj":"Protein"},{"id":"T26211","span":{"begin":78,"end":85},"obj":"Protein"},{"id":"T26210","span":{"begin":0,"end":5},"obj":"Protein"}],"text":"Cebpb−/− MEFs were co-transfected with expression plasmids encoding wild-type C/EBP-β or the indicated C/EBP-β phospho-acceptor mutants, along with the pGLmP-539 SerpinB2 promoter-luciferase reporter and β-galactosidase reporter plasmids, and stimulated with LPS for 4 hrs."}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T26487","span":{"begin":19,"end":33},"obj":"Gene_expression"},{"id":"T26486","span":{"begin":243,"end":253},"obj":"Positive_regulation"},{"id":"T26485","span":{"begin":39,"end":49},"obj":"Gene_expression"},{"id":"T26472","span":{"begin":204,"end":228},"obj":"Protein"},{"id":"T26471","span":{"begin":162,"end":199},"obj":"Protein"},{"id":"T26470","span":{"begin":103,"end":135},"obj":"Protein"},{"id":"T26469","span":{"begin":78,"end":85},"obj":"Protein"},{"id":"T26468","span":{"begin":0,"end":5},"obj":"Protein"}],"relations":[{"id":"R18803","pred":"themeOf","subj":"T26468","obj":"T26486"},{"id":"R18804","pred":"themeOf","subj":"T26468","obj":"T26487"},{"id":"R18805","pred":"themeOf","subj":"T26469","obj":"T26485"}],"text":"Cebpb−/− MEFs were co-transfected with expression plasmids encoding wild-type C/EBP-β or the indicated C/EBP-β phospho-acceptor mutants, along with the pGLmP-539 SerpinB2 promoter-luciferase reporter and β-galactosidase reporter plasmids, and stimulated with LPS for 4 hrs."}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T26610","span":{"begin":39,"end":49},"obj":"Gene_expression"},{"id":"T26599","span":{"begin":204,"end":228},"obj":"Protein"},{"id":"T26598","span":{"begin":162,"end":199},"obj":"Protein"},{"id":"T26597","span":{"begin":103,"end":135},"obj":"Protein"},{"id":"T26596","span":{"begin":78,"end":85},"obj":"Protein"},{"id":"T26595","span":{"begin":0,"end":5},"obj":"Protein"}],"relations":[{"id":"R18838","pred":"themeOf","subj":"T26596","obj":"T26610"}],"text":"Cebpb−/− MEFs were co-transfected with expression plasmids encoding wild-type C/EBP-β or the indicated C/EBP-β phospho-acceptor mutants, along with the pGLmP-539 SerpinB2 promoter-luciferase reporter and β-galactosidase reporter plasmids, and stimulated with LPS for 4 hrs."}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T26545","span":{"begin":39,"end":49},"obj":"Gene_expression"},{"id":"T26533","span":{"begin":204,"end":228},"obj":"Protein"},{"id":"T26532","span":{"begin":162,"end":199},"obj":"Protein"},{"id":"T26531","span":{"begin":103,"end":135},"obj":"Protein"},{"id":"T26530","span":{"begin":78,"end":85},"obj":"Protein"},{"id":"T26529","span":{"begin":0,"end":5},"obj":"Protein"}],"relations":[{"id":"R18815","pred":"themeOf","subj":"T26529","obj":"T26545"},{"id":"R18816","pred":"themeOf","subj":"T26530","obj":"T26545"},{"id":"R18817","pred":"themeOf","subj":"T26531","obj":"T26545"},{"id":"R18818","pred":"themeOf","subj":"T26532","obj":"T26545"},{"id":"R18819","pred":"themeOf","subj":"T26533","obj":"T26545"}],"text":"Cebpb−/− MEFs were co-transfected with expression plasmids encoding wild-type C/EBP-β or the indicated C/EBP-β phospho-acceptor mutants, along with the pGLmP-539 SerpinB2 promoter-luciferase reporter and β-galactosidase reporter plasmids, and stimulated with LPS for 4 hrs."}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T26741","span":{"begin":148,"end":199},"obj":"Protein"},{"id":"T26733","span":{"begin":9,"end":12},"obj":"Protein"},{"id":"T26731","span":{"begin":68,"end":85},"obj":"Protein"},{"id":"T26717","span":{"begin":259,"end":262},"obj":"Entity"},{"id":"T26715","span":{"begin":267,"end":272},"obj":"Protein"},{"id":"T26711","span":{"begin":153,"end":157},"obj":"Protein"},{"id":"T26705","span":{"begin":0,"end":6},"obj":"Protein"},{"id":"T26701","span":{"begin":204,"end":228},"obj":"Protein"},{"id":"T26695","span":{"begin":103,"end":136},"obj":"Protein"}],"text":"Cebpb−/− MEFs were co-transfected with expression plasmids encoding wild-type C/EBP-β or the indicated C/EBP-β phospho-acceptor mutants, along with the pGLmP-539 SerpinB2 promoter-luciferase reporter and β-galactosidase reporter plasmids, and stimulated with LPS for 4 hrs."}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T26643","span":{"begin":39,"end":49},"obj":"Gene_expression"},{"id":"T26642","span":{"begin":39,"end":49},"obj":"Gene_expression"},{"id":"T26641","span":{"begin":39,"end":49},"obj":"Gene_expression"},{"id":"T26640","span":{"begin":39,"end":49},"obj":"Gene_expression"},{"id":"T26639","span":{"begin":204,"end":228},"obj":"Protein"},{"id":"T26638","span":{"begin":180,"end":190},"obj":"Protein"},{"id":"T26637","span":{"begin":152,"end":179},"obj":"Protein"},{"id":"T26636","span":{"begin":103,"end":110},"obj":"Protein"}],"relations":[{"id":"R18851","pred":"themeOf","subj":"T26636","obj":"T26640"},{"id":"R18852","pred":"themeOf","subj":"T26637","obj":"T26641"},{"id":"R18853","pred":"themeOf","subj":"T26638","obj":"T26642"},{"id":"R18854","pred":"themeOf","subj":"T26639","obj":"T26643"}],"text":"Cebpb−/− MEFs were co-transfected with expression plasmids encoding wild-type C/EBP-β or the indicated C/EBP-β phospho-acceptor mutants, along with the pGLmP-539 SerpinB2 promoter-luciferase reporter and β-galactosidase reporter plasmids, and stimulated with LPS for 4 hrs."}

    testone

    {"project":"testone","denotations":[{"id":"T26016","span":{"begin":204,"end":228},"obj":"Protein"},{"id":"T26015","span":{"begin":162,"end":199},"obj":"Protein"},{"id":"T26014","span":{"begin":103,"end":135},"obj":"Protein"},{"id":"T26013","span":{"begin":78,"end":85},"obj":"Protein"},{"id":"T26012","span":{"begin":0,"end":5},"obj":"Protein"}],"text":"Cebpb−/− MEFs were co-transfected with expression plasmids encoding wild-type C/EBP-β or the indicated C/EBP-β phospho-acceptor mutants, along with the pGLmP-539 SerpinB2 promoter-luciferase reporter and β-galactosidase reporter plasmids, and stimulated with LPS for 4 hrs."}

    test3

    {"project":"test3","denotations":[{"id":"T26079","span":{"begin":204,"end":228},"obj":"Protein"},{"id":"T26078","span":{"begin":162,"end":199},"obj":"Protein"},{"id":"T26077","span":{"begin":103,"end":135},"obj":"Protein"},{"id":"T26076","span":{"begin":78,"end":85},"obj":"Protein"},{"id":"T26075","span":{"begin":39,"end":49},"obj":"Gene_expression"},{"id":"T26074","span":{"begin":0,"end":5},"obj":"Protein"},{"id":"T26047","span":{"begin":204,"end":228},"obj":"Protein"},{"id":"T26046","span":{"begin":162,"end":199},"obj":"Protein"},{"id":"T26045","span":{"begin":103,"end":135},"obj":"Protein"},{"id":"T26044","span":{"begin":78,"end":85},"obj":"Protein"},{"id":"T26043","span":{"begin":0,"end":5},"obj":"Protein"}],"relations":[{"id":"R18570","pred":"themeOf","subj":"T26076","obj":"T26075"}],"text":"Cebpb−/− MEFs were co-transfected with expression plasmids encoding wild-type C/EBP-β or the indicated C/EBP-β phospho-acceptor mutants, along with the pGLmP-539 SerpinB2 promoter-luciferase reporter and β-galactosidase reporter plasmids, and stimulated with LPS for 4 hrs."}