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PMC:3589482 / 36146-36874 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16214 560-569 VBN denotes increased
T16213 546-559 RB denotes significantly
T16212 542-545 VBD denotes was
T16211 533-541 NN denotes activity
T16210 524-532 NN denotes promoter
T16209 515-523 JJ denotes SerpinB2
T16208 500-514 JJ denotes LPS-stimulated
T16207 495-499 IN denotes that
T16206 489-494 VBD denotes found
T16205 486-488 PRP denotes We
T16204 484-485 . denotes .
T16203 480-484 NNS denotes MEFs
T16202 478-479 CD denotes −
T16201 477-478 CD denotes /
T16200 476-477 VBP denotes −
T16199 471-476 NNP denotes Cebpb
T16198 467-470 CC denotes and
T16197 465-466 CD denotes +
T16196 464-465 VBD denotes /
T16195 463-464 NNP denotes +
T16194 458-463 NNP denotes Cebpb
T16193 453-457 IN denotes into
T16192 443-452 VBP denotes construct
T16191 434-442 NN denotes reporter
T16190 423-433 NN denotes luciferase
T16189 414-422 NNP denotes SerpinB2
T16188 407-413 NN denotes murine
T16187 397-406 JJ denotes pGLmP-539
T16186 393-396 DT denotes the
T16185 390-392 IN denotes of
T16184 377-389 NN denotes transfection
T16183 374-376 IN denotes by
T16182 365-373 VBN denotes examined
T16181 361-364 VBD denotes was
T16180 352-360 NN denotes promoter
T16179 343-351 JJ denotes proximal
T16178 334-342 NNP denotes SerpinB2
T16177 330-333 DT denotes the
T16176 325-329 IN denotes from
T16175 311-324 NN denotes transcription
T16174 304-310 VB denotes direct
T16173 301-303 TO denotes to
T16172 299-300 NN denotes β
T16171 298-299 : denotes -
T16170 293-298 NNP denotes C/EBP
T16169 282-292 JJ denotes endogenous
T16168 279-281 IN denotes of
T16167 271-278 NN denotes ability
T16166 267-270 DT denotes The
T16165 265-266 . denotes .
T16164 262-265 NNP denotes LPS
T16163 259-261 TO denotes to
T16162 250-258 NN denotes response
T16161 247-249 IN denotes in
T16160 241-246 NNS denotes cells
T16159 238-240 IN denotes in
T16158 229-237 NN denotes promoter
T16157 220-228 NNP denotes SerpinB2
T16156 216-219 DT denotes the
T16155 211-215 IN denotes from
T16154 197-210 NN denotes transcription
T16153 189-196 VBG denotes driving
T16152 185-188 IN denotes for
T16151 178-184 NN denotes factor
T16150 168-177 JJ denotes essential
T16149 165-167 DT denotes an
T16148 161-164 VBD denotes was
T16147 159-160 NN denotes β
T16146 158-159 : denotes -
T16145 153-158 NNP denotes C/EBP
T16144 145-152 IN denotes whether
T16143 142-144 IN denotes of
T16142 133-141 NN denotes question
T16141 129-132 DT denotes the
T16140 121-128 VB denotes address
T16139 118-120 TO denotes to
T16138 111-117 VBD denotes wanted
T16137 108-110 PRP denotes we
T16136 106-107 , denotes ,
T16135 102-106 NN denotes vivo
T16134 99-101 IN denotes in
T16133 95-98 CC denotes and
T16132 89-94 NN denotes vitro
T16131 86-88 IN denotes in
T16130 81-85 DT denotes both
T16129 74-80 NN denotes manner
T16128 60-73 JJ denotes LPS-inducible
T16127 57-59 DT denotes an
T16126 54-56 IN denotes in
T16125 45-53 NN denotes promoter
T16124 36-44 JJ denotes proximal
T16123 27-35 NNP denotes SerpinB2
T16122 23-26 DT denotes the
T16121 20-22 TO denotes to
T16120 14-19 NNS denotes binds
T16119 12-13 NN denotes β
T16118 11-12 : denotes -
T16117 6-11 NNP denotes C/EBP
T16116 0-5 IN denotes Since
T16248 727-728 . denotes .
T16247 719-727 NN denotes activity
T16246 710-718 NN denotes promoter
T16245 701-709 JJ denotes proximal
T16244 692-700 JJ denotes SerpinB2
T16243 680-691 JJ denotes LPS-induced
T16242 676-679 IN denotes for
T16241 667-675 VBN denotes required
T16240 664-666 VBZ denotes is
T16239 662-663 NN denotes β
T16238 661-662 : denotes -
T16237 656-661 NNP denotes C/EBP
T16236 645-655 JJ denotes endogenous
T16235 640-644 IN denotes that
T16234 629-639 VBG denotes indicating
T16233 627-628 , denotes ,
T16232 626-627 -RRB- denotes )
T16231 624-626 NNP denotes 8A
T16230 619-623 NNP denotes Fig.
T16229 618-619 -LRB- denotes (
T16228 613-617 NNS denotes MEFs
T16227 611-612 CD denotes −
T16226 610-611 VBD denotes /
T16225 609-610 NNP denotes −
T16224 604-609 NNP denotes Cebpb
T16223 601-603 IN denotes in
T16222 591-600 VBD denotes abrogated
T16221 587-590 CC denotes and
T16220 582-586 NNS denotes MEFs
T16219 580-581 CD denotes +
T16218 579-580 VBD denotes /
T16217 578-579 NNP denotes +
T16216 573-578 NNP denotes Cebpb
T16215 570-572 IN denotes in
R11818 T16117 T16119 compound C/EBP,β
R11819 T16118 T16119 punct -,β
R11820 T16119 T16120 compound β,binds
R11821 T16120 T16116 pobj binds,Since
R11823 T16122 T16125 det the,promoter
R11824 T16123 T16125 nmod SerpinB2,promoter
R11825 T16124 T16125 amod proximal,promoter
R11826 T16125 T16121 pobj promoter,to
R11827 T16126 T16125 prep in,promoter
R11828 T16127 T16129 det an,manner
R11829 T16128 T16129 amod LPS-inducible,manner
R11830 T16129 T16126 pobj manner,in
R11831 T16130 T16131 preconj both,in
R11833 T16132 T16131 pobj vitro,in
R11834 T16133 T16131 cc and,in
R11835 T16134 T16131 conj in,in
R11836 T16135 T16134 pobj vivo,in
R11837 T16136 T16138 punct ",",wanted
R11838 T16137 T16138 nsubj we,wanted
R11839 T16138 T16138 ROOT wanted,wanted
R11840 T16139 T16140 aux to,address
R11841 T16140 T16138 xcomp address,wanted
R11842 T16141 T16142 det the,question
R11843 T16142 T16140 dobj question,address
R11844 T16143 T16142 prep of,question
R11845 T16144 T16148 mark whether,was
R11846 T16145 T16147 compound C/EBP,β
R11847 T16146 T16147 punct -,β
R11848 T16147 T16148 nsubj β,was
R11849 T16148 T16143 pcomp was,of
R11850 T16149 T16151 det an,factor
R11851 T16150 T16151 amod essential,factor
R11852 T16151 T16148 attr factor,was
R11853 T16152 T16151 prep for,factor
R11854 T16153 T16152 pcomp driving,for
R11855 T16154 T16153 dobj transcription,driving
R11856 T16155 T16153 prep from,driving
R11857 T16156 T16158 det the,promoter
R11858 T16157 T16158 compound SerpinB2,promoter
R11859 T16158 T16155 pobj promoter,from
R11860 T16159 T16158 prep in,promoter
R11861 T16160 T16159 pobj cells,in
R11862 T16161 T16153 prep in,driving
R11863 T16162 T16161 pobj response,in
R11864 T16163 T16162 prep to,response
R11865 T16164 T16163 pobj LPS,to
R11866 T16165 T16138 punct .,wanted
R11867 T16166 T16167 det The,ability
R11868 T16167 T16182 nsubjpass ability,examined
R11869 T16168 T16167 prep of,ability
R11870 T16169 T16172 amod endogenous,β
R11871 T16170 T16172 compound C/EBP,β
R11872 T16171 T16172 punct -,β
R11873 T16172 T16168 pobj β,of
R11874 T16173 T16174 aux to,direct
R11875 T16174 T16167 acl direct,ability
R11876 T16175 T16174 dobj transcription,direct
R11877 T16176 T16174 prep from,direct
R11878 T16177 T16180 det the,promoter
R11879 T16178 T16180 nmod SerpinB2,promoter
R11880 T16179 T16180 amod proximal,promoter
R11881 T16180 T16176 pobj promoter,from
R11882 T16181 T16182 auxpass was,examined
R11883 T16182 T16182 ROOT examined,examined
R11884 T16183 T16182 agent by,examined
R11885 T16184 T16183 pobj transfection,by
R11886 T16185 T16184 prep of,transfection
R11887 T16186 T16191 det the,reporter
R11888 T16187 T16191 amod pGLmP-539,reporter
R11889 T16188 T16191 compound murine,reporter
R11890 T16189 T16191 compound SerpinB2,reporter
R11891 T16190 T16191 compound luciferase,reporter
R11892 T16191 T16185 pobj reporter,of
R11893 T16192 T16182 xcomp construct,examined
R11894 T16193 T16192 prep into,construct
R11895 T16194 T16195 compound Cebpb,+
R11896 T16195 T16193 pobj +,into
R11897 T16196 T16182 conj /,examined
R11898 T16197 T16196 dobj +,/
R11899 T16198 T16196 cc and,/
R11900 T16199 T16200 nsubj Cebpb,−
R11901 T16200 T16196 conj −,/
R11902 T16201 T16203 nummod /,MEFs
R11903 T16202 T16203 nummod −,MEFs
R11904 T16203 T16200 dobj MEFs,−
R11905 T16204 T16200 punct .,−
R11906 T16205 T16206 nsubj We,found
R11907 T16206 T16206 ROOT found,found
R11908 T16207 T16214 mark that,increased
R11909 T16208 T16211 amod LPS-stimulated,activity
R11910 T16209 T16211 amod SerpinB2,activity
R11911 T16210 T16211 compound promoter,activity
R11912 T16211 T16214 nsubjpass activity,increased
R11913 T16212 T16214 auxpass was,increased
R11914 T16213 T16214 advmod significantly,increased
R11915 T16214 T16206 ccomp increased,found
R11916 T16215 T16214 prep in,increased
R11917 T16216 T16217 compound Cebpb,+
R11918 T16217 T16215 pobj +,in
R11919 T16218 T16214 advcl /,increased
R11920 T16219 T16220 nummod +,MEFs
R11921 T16220 T16218 dobj MEFs,/
R11922 T16221 T16218 cc and,/
R11923 T16222 T16218 conj abrogated,/
R11924 T16223 T16222 prep in,abrogated
R11925 T16224 T16225 compound Cebpb,−
R11926 T16225 T16223 pobj −,in
R11927 T16226 T16218 conj /,/
R11928 T16227 T16228 nummod −,MEFs
R11929 T16228 T16226 dobj MEFs,/
R11930 T16229 T16228 punct (,MEFs
R11931 T16230 T16231 compound Fig.,8A
R11932 T16231 T16228 appos 8A,MEFs
R11933 T16232 T16228 punct ),MEFs
R11934 T16233 T16226 punct ",",/
R11935 T16234 T16226 advcl indicating,/
R11936 T16235 T16241 mark that,required
R11937 T16236 T16239 amod endogenous,β
R11938 T16237 T16239 compound C/EBP,β
R11939 T16238 T16239 punct -,β
R11940 T16239 T16241 nsubjpass β,required
R11941 T16240 T16241 auxpass is,required
R11942 T16241 T16234 ccomp required,indicating
R11943 T16242 T16241 prep for,required
R11944 T16243 T16247 amod LPS-induced,activity
R11945 T16244 T16247 amod SerpinB2,activity
R11946 T16245 T16247 amod proximal,activity
R11947 T16246 T16247 compound promoter,activity
R11948 T16247 T16242 pobj activity,for
R11949 T16248 T16206 punct .,found

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T15906 719-727 NN denotes activity
T15905 710-718 NN denotes promoter
T15904 701-709 JJ denotes proximal
T15903 692-700 NN denotes SerpinB2
T15902 680-691 JJ denotes LPS-induced
T15901 676-679 IN denotes for
T15900 667-675 VB denotes required
T15899 664-666 VB denotes is
T15898 656-663 NN denotes C/EBP-β
T15897 645-655 JJ denotes endogenous
T15896 640-644 IN denotes that
T15895 629-639 VB denotes indicating
T15894 627-628 -COMMA- denotes ,
T15893 626-627 -RRB- denotes )
T15892 624-626 NN denotes 8A
T15891 619-623 NNP denotes Fig.
T15890 618-619 -LRB- denotes (
T15889 613-617 NN denotes MEFs
T15888 604-612 NN denotes Cebpb−/−
T15887 601-603 IN denotes in
T15886 591-600 VB denotes abrogated
T15885 587-590 CC denotes and
T15884 582-586 NN denotes MEFs
T15883 573-581 JJ denotes Cebpb+/+
T15882 570-572 IN denotes in
T15881 560-569 VB denotes increased
T15880 546-559 RB denotes significantly
T15879 542-545 VB denotes was
T15878 533-541 NN denotes activity
T15877 524-532 NN denotes promoter
T15876 515-523 NN denotes SerpinB2
T15875 500-514 JJ denotes LPS-stimulated
T15874 495-499 IN denotes that
T15873 489-494 VB denotes found
T15872 486-488 PRP denotes We
T15871 480-484 NN denotes MEFs
T15870 471-479 NNP denotes Cebpb−/−
T15869 467-470 CC denotes and
T15868 458-466 NNP denotes Cebpb+/+
T15867 453-457 IN denotes into
T15866 443-452 NN denotes construct
T15865 434-442 NN denotes reporter
T15864 423-433 NN denotes luciferase
T15863 414-422 NN denotes SerpinB2
T15862 407-413 JJ denotes murine
T15861 397-406 NN denotes pGLmP-539
T15860 393-396 DT denotes the
T15859 390-392 IN denotes of
T15858 377-389 NN denotes transfection
T15857 374-376 IN denotes by
T15856 365-373 VB denotes examined
T15855 361-364 VB denotes was
T15854 352-360 NN denotes promoter
T15853 343-351 JJ denotes proximal
T15852 334-342 NN denotes SerpinB2
T15851 330-333 DT denotes the
T15850 325-329 IN denotes from
T15849 311-324 NN denotes transcription
T15848 304-310 VB denotes direct
T15847 301-303 TO denotes to
T15846 293-300 NN denotes C/EBP-β
T15845 282-292 JJ denotes endogenous
T15844 279-281 IN denotes of
T15843 271-278 NN denotes ability
T15842 267-270 DT denotes The
T15841 262-265 NN denotes LPS
T15840 259-261 TO denotes to
T15839 250-258 NN denotes response
T15838 247-249 IN denotes in
T15837 241-246 NN denotes cells
T15836 238-240 IN denotes in
T15835 229-237 NN denotes promoter
T15834 220-228 NN denotes SerpinB2
T15833 216-219 DT denotes the
T15832 211-215 IN denotes from
T15831 197-210 NN denotes transcription
T15830 189-196 VB denotes driving
T15829 185-188 IN denotes for
T15828 178-184 NN denotes factor
T15827 168-177 JJ denotes essential
T15826 165-167 DT denotes an
T15825 161-164 VB denotes was
T15824 153-160 NN denotes C/EBP-β
T15823 145-152 IN denotes whether
T15822 142-144 IN denotes of
T15821 133-141 NN denotes question
T15820 129-132 DT denotes the
T15819 121-128 VB denotes address
T15818 118-120 TO denotes to
T15817 111-117 VB denotes wanted
T15816 108-110 PRP denotes we
T15815 106-107 -COMMA- denotes ,
T15814 102-106 FW denotes vivo
T15813 99-101 FW denotes in
T15812 95-98 CC denotes and
T15811 89-94 FW denotes vitro
T15810 86-88 FW denotes in
T15809 81-85 CC denotes both
T15808 74-80 NN denotes manner
T15807 60-73 JJ denotes LPS-inducible
T15806 57-59 DT denotes an
T15805 54-56 IN denotes in
T15804 45-53 NN denotes promoter
T15803 36-44 JJ denotes proximal
T15802 27-35 NN denotes SerpinB2
T15801 23-26 DT denotes the
T15800 20-22 TO denotes to
T15799 14-19 VB denotes binds
T15798 6-13 NN denotes C/EBP-β
T15797 0-5 IN denotes Since
R11627 T15798 T15799 arg1Of C/EBP-β,binds
R11628 T15799 T15797 arg2Of binds,Since
R11629 T15799 T15800 arg1Of binds,to
R11630 T15799 T15805 arg1Of binds,in
R11631 T15799 T15811 arg1Of binds,vitro
R11632 T15799 T15814 arg1Of binds,vivo
R11633 T15804 T15800 arg2Of promoter,to
R11634 T15804 T15801 arg1Of promoter,the
R11635 T15804 T15802 arg1Of promoter,SerpinB2
R11636 T15804 T15803 arg1Of promoter,proximal
R11637 T15808 T15805 arg2Of manner,in
R11638 T15808 T15806 arg1Of manner,an
R11639 T15808 T15807 arg1Of manner,LPS-inducible
R11640 T15811 T15810 arg1Of vitro,in
R11641 T15811 T15812 arg1Of vitro,and
R11642 T15812 T15809 arg1Of and,both
R11643 T15814 T15812 arg2Of vivo,and
R11644 T15814 T15813 arg1Of vivo,in
R11645 T15816 T15817 arg1Of we,wanted
R11646 T15816 T15819 arg1Of we,address
R11647 T15817 T15797 arg1Of wanted,Since
R11648 T15817 T15815 arg1Of wanted,","
R11649 T15819 T15817 arg2Of address,wanted
R11650 T15819 T15818 arg1Of address,to
R11651 T15821 T15819 arg2Of question,address
R11652 T15821 T15820 arg1Of question,the
R11653 T15821 T15822 arg1Of question,of
R11654 T15824 T15825 arg1Of C/EBP-β,was
R11655 T15825 T15822 arg2Of was,of
R11656 T15825 T15823 arg1Of was,whether
R11657 T15828 T15825 arg2Of factor,was
R11658 T15828 T15826 arg1Of factor,an
R11659 T15828 T15827 arg1Of factor,essential
R11660 T15828 T15829 arg1Of factor,for
R11661 T15830 T15829 arg2Of driving,for
R11662 T15831 T15830 arg2Of transcription,driving
R11663 T15831 T15832 arg1Of transcription,from
R11664 T15831 T15836 arg1Of transcription,in
R11665 T15835 T15832 arg2Of promoter,from
R11666 T15835 T15833 arg1Of promoter,the
R11667 T15835 T15834 arg1Of promoter,SerpinB2
R11668 T15837 T15836 arg2Of cells,in
R11669 T15837 T15838 arg1Of cells,in
R11670 T15839 T15838 arg2Of response,in
R11671 T15839 T15840 arg1Of response,to
R11672 T15841 T15840 arg2Of LPS,to
R11673 T15843 T15842 arg1Of ability,The
R11674 T15843 T15844 arg1Of ability,of
R11675 T15843 T15847 modOf ability,to
R11676 T15843 T15855 arg1Of ability,was
R11677 T15843 T15856 arg2Of ability,examined
R11678 T15846 T15844 arg2Of C/EBP-β,of
R11679 T15846 T15845 arg1Of C/EBP-β,endogenous
R11680 T15848 T15847 arg1Of direct,to
R11681 T15849 T15848 arg2Of transcription,direct
R11682 T15849 T15850 arg1Of transcription,from
R11683 T15854 T15850 arg2Of promoter,from
R11684 T15854 T15851 arg1Of promoter,the
R11685 T15854 T15852 arg1Of promoter,SerpinB2
R11686 T15854 T15853 arg1Of promoter,proximal
R11687 T15856 T15855 arg2Of examined,was
R11688 T15858 T15856 arg1Of transfection,examined
R11689 T15858 T15857 arg2Of transfection,by
R11690 T15858 T15859 arg1Of transfection,of
R11691 T15858 T15867 arg1Of transfection,into
R11692 T15866 T15859 arg2Of construct,of
R11693 T15866 T15860 arg1Of construct,the
R11694 T15866 T15861 arg1Of construct,pGLmP-539
R11695 T15866 T15862 arg1Of construct,murine
R11696 T15866 T15863 arg1Of construct,SerpinB2
R11697 T15866 T15864 arg1Of construct,luciferase
R11698 T15866 T15865 arg1Of construct,reporter
R11699 T15868 T15869 arg1Of Cebpb+/+,and
R11700 T15870 T15869 arg2Of Cebpb−/−,and
R11701 T15871 T15867 arg2Of MEFs,into
R11702 T15871 T15868 arg1Of MEFs,Cebpb+/+
R11703 T15871 T15870 arg1Of MEFs,Cebpb−/−
R11704 T15872 T15873 arg1Of We,found
R11705 T15873 T15894 arg1Of found,","
R11706 T15873 T15895 modOf found,indicating
R11707 T15878 T15875 arg1Of activity,LPS-stimulated
R11708 T15878 T15876 arg1Of activity,SerpinB2
R11709 T15878 T15877 arg1Of activity,promoter
R11710 T15878 T15879 arg1Of activity,was
R11711 T15878 T15881 arg2Of activity,increased
R11712 T15878 T15886 arg1Of activity,abrogated
R11713 T15881 T15879 arg2Of increased,was
R11714 T15881 T15880 arg1Of increased,significantly
R11715 T15881 T15882 arg1Of increased,in
R11716 T15881 T15885 arg1Of increased,and
R11717 T15884 T15882 arg2Of MEFs,in
R11718 T15884 T15883 arg1Of MEFs,Cebpb+/+
R11719 T15885 T15873 arg2Of and,found
R11720 T15885 T15874 arg1Of and,that
R11721 T15886 T15885 arg2Of abrogated,and
R11722 T15886 T15887 arg1Of abrogated,in
R11723 T15889 T15887 arg2Of MEFs,in
R11724 T15889 T15888 arg1Of MEFs,Cebpb−/−
R11725 T15892 T15886 arg2Of 8A,abrogated
R11726 T15892 T15890 arg2Of 8A,(
R11727 T15892 T15891 arg1Of 8A,Fig.
R11728 T15893 T15890 arg3Of ),(
R11729 T15898 T15897 arg1Of C/EBP-β,endogenous
R11730 T15898 T15899 arg1Of C/EBP-β,is
R11731 T15898 T15900 arg2Of C/EBP-β,required
R11732 T15900 T15895 arg2Of required,indicating
R11733 T15900 T15896 arg1Of required,that
R11734 T15900 T15899 arg2Of required,is
R11735 T15900 T15901 arg1Of required,for
R11736 T15906 T15901 arg2Of activity,for
R11737 T15906 T15902 arg1Of activity,LPS-induced
R11738 T15906 T15903 arg1Of activity,SerpinB2
R11739 T15906 T15904 arg1Of activity,proximal
R11740 T15906 T15905 arg1Of activity,promoter

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T15768 692-700 Protein denotes SerpinB2
T15767 656-663 Protein denotes C/EBP-β
T15766 604-609 Protein denotes Cebpb
T15765 573-578 Protein denotes Cebpb
T15764 515-523 Protein denotes SerpinB2
T15763 471-476 Protein denotes Cebpb
T15762 458-463 Protein denotes Cebpb
T15761 414-442 Protein denotes SerpinB2 luciferase reporter
T15760 334-342 Protein denotes SerpinB2
T15759 293-300 Protein denotes C/EBP-β
T15758 220-228 Protein denotes SerpinB2
T15757 153-160 Protein denotes C/EBP-β
T15756 27-35 Protein denotes SerpinB2
T15755 6-13 Protein denotes C/EBP-β

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T15962 423-433 http://www.uniprot.org/uniprot/P08659 denotes luciferase
T15961 692-700 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T15960 515-523 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T15959 414-422 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T15958 334-342 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T15957 220-228 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T15956 27-35 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T15954 604-609 http://www.uniprot.org/uniprot/P28033 denotes Cebpb
T15953 573-578 http://www.uniprot.org/uniprot/P28033 denotes Cebpb
T15952 471-476 http://www.uniprot.org/uniprot/P28033 denotes Cebpb
T15951 458-463 http://www.uniprot.org/uniprot/P28033 denotes Cebpb
T15950 293-300 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T15949 153-160 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T15948 6-13 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β

GO-BP

Id Subject Object Predicate Lexical cue
T15771 250-265 http://purl.obolibrary.org/obo/GO_0032496 denotes response to LPS
T15770 311-324 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T15769 197-210 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-CC

Id Subject Object Predicate Lexical cue
T15772 241-246 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T15713 486-728 Sentence denotes We found that LPS-stimulated SerpinB2 promoter activity was significantly increased in Cebpb+/+ MEFs and abrogated in Cebpb−/− MEFs (Fig. 8A), indicating that endogenous C/EBP-β is required for LPS-induced SerpinB2 proximal promoter activity.
T15712 267-485 Sentence denotes The ability of endogenous C/EBP-β to direct transcription from the SerpinB2 proximal promoter was examined by transfection of the pGLmP-539 murine SerpinB2 luciferase reporter construct into Cebpb+/+ and Cebpb−/− MEFs.
T15711 0-266 Sentence denotes Since C/EBP-β binds to the SerpinB2 proximal promoter in an LPS-inducible manner both in vitro and in vivo, we wanted to address the question of whether C/EBP-β was an essential factor for driving transcription from the SerpinB2 promoter in cells in response to LPS.
T220 0-266 Sentence denotes Since C/EBP-β binds to the SerpinB2 proximal promoter in an LPS-inducible manner both in vitro and in vivo, we wanted to address the question of whether C/EBP-β was an essential factor for driving transcription from the SerpinB2 promoter in cells in response to LPS.
T221 267-485 Sentence denotes The ability of endogenous C/EBP-β to direct transcription from the SerpinB2 proximal promoter was examined by transfection of the pGLmP-539 murine SerpinB2 luciferase reporter construct into Cebpb+/+ and Cebpb−/− MEFs.
T222 486-728 Sentence denotes We found that LPS-stimulated SerpinB2 promoter activity was significantly increased in Cebpb+/+ MEFs and abrogated in Cebpb−/− MEFs (Fig. 8A), indicating that endogenous C/EBP-β is required for LPS-induced SerpinB2 proximal promoter activity.

simple1

Id Subject Object Predicate Lexical cue
T15788 692-700 Protein denotes SerpinB2
T15787 656-663 Protein denotes C/EBP-β
T15786 604-609 Protein denotes Cebpb
T15785 573-578 Protein denotes Cebpb
T15784 515-523 Protein denotes SerpinB2
T15783 471-476 Protein denotes Cebpb
T15782 458-463 Protein denotes Cebpb
T15781 414-442 Protein denotes SerpinB2 luciferase reporter
T15780 334-342 Protein denotes SerpinB2
T15779 293-300 Protein denotes C/EBP-β
T15778 220-228 Protein denotes SerpinB2
T15777 153-160 Protein denotes C/EBP-β
T15776 27-35 Protein denotes SerpinB2
T15775 6-13 Protein denotes C/EBP-β

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T15934 515-523 Protein denotes SerpinB2
T15933 414-442 Protein denotes SerpinB2 luciferase reporter
T15932 334-342 Protein denotes SerpinB2
T15931 293-300 Protein denotes C/EBP-β
T15930 471-476 Protein denotes Cebpb
T15929 458-463 Protein denotes Cebpb
T15928 220-228 Protein denotes SerpinB2
T15927 153-160 Protein denotes C/EBP-β
T15926 27-35 Protein denotes SerpinB2
T15925 6-13 Protein denotes C/EBP-β
T15946 500-514 Positive_regulation denotes LPS-stimulated
T15945 591-600 Negative_regulation denotes abrogated
T15944 680-691 Positive_regulation denotes LPS-induced
T15943 667-675 Positive_regulation denotes required
T15942 560-569 Positive_regulation denotes increased
T15941 311-324 Transcription denotes transcription
T15940 14-19 Binding denotes binds
T15939 197-210 Transcription denotes transcription
T15938 692-700 Protein denotes SerpinB2
T15937 656-663 Protein denotes C/EBP-β
T15936 604-609 Protein denotes Cebpb
T15935 573-578 Protein denotes Cebpb
R11743 T15925 T15940 themeOf C/EBP-β,binds
R11744 T15926 T15940 themeOf SerpinB2,binds
R11745 T15928 T15939 themeOf SerpinB2,transcription
R11746 T15932 T15941 themeOf SerpinB2,transcription
R11747 T15934 T15942 themeOf SerpinB2,increased
R11748 T15934 T15945 themeOf SerpinB2,abrogated
R11749 T15934 T15946 themeOf SerpinB2,LPS-stimulated
R11750 T15935 T15942 themeOf Cebpb,increased
R11751 T15937 T15943 causeOf C/EBP-β,required
R11752 T15937 T15943 causeOf C/EBP-β,required
R11753 T15938 T15943 themeOf SerpinB2,required
R11754 T15938 T15944 themeOf SerpinB2,LPS-induced
R11755 T15944 T15943 themeOf LPS-induced,required
R11756 T15946 T15942 themeOf LPS-stimulated,increased
R11757 T15946 T15945 themeOf LPS-stimulated,abrogated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T16025 667-675 Positive_regulation denotes required
T16024 560-569 Positive_regulation denotes increased
T16023 591-600 Negative_regulation denotes abrogated
T16022 680-691 Positive_regulation denotes LPS-induced
T16021 168-177 Positive_regulation denotes essential
T16020 14-19 Binding denotes binds
T16019 692-700 Protein denotes SerpinB2
T16018 656-663 Protein denotes C/EBP-β
T16017 604-609 Protein denotes Cebpb
T16016 573-578 Protein denotes Cebpb
T16015 515-523 Protein denotes SerpinB2
T16014 414-442 Protein denotes SerpinB2 luciferase reporter
T16013 334-342 Protein denotes SerpinB2
T16012 293-300 Protein denotes C/EBP-β
T16011 471-476 Protein denotes Cebpb
T16010 458-463 Protein denotes Cebpb
T16009 220-228 Protein denotes SerpinB2
T16008 153-160 Protein denotes C/EBP-β
T16007 27-35 Protein denotes SerpinB2
T16006 6-13 Protein denotes C/EBP-β
R11772 T16006 T16020 themeOf C/EBP-β,binds
R11773 T16007 T16020 themeOf SerpinB2,binds
R11774 T16008 T16021 themeOf C/EBP-β,essential
R11775 T16016 T16024 themeOf Cebpb,increased
R11776 T16017 T16023 themeOf Cebpb,abrogated
R11777 T16018 T16025 causeOf C/EBP-β,required
R11778 T16019 T16025 themeOf SerpinB2,required
R11779 T16019 T16022 themeOf SerpinB2,LPS-induced

DLUT931

Id Subject Object Predicate Lexical cue
T15985 680-691 Positive_regulation denotes LPS-induced
T15984 591-600 Negative_regulation denotes abrogated
T15983 560-569 Positive_regulation denotes increased
T15982 168-177 Positive_regulation denotes essential
T15981 197-210 Transcription denotes transcription
T15980 14-19 Binding denotes binds
T15978 692-700 Protein denotes SerpinB2
T15977 656-663 Protein denotes C/EBP-β
T15976 604-609 Protein denotes Cebpb
T15975 573-578 Protein denotes Cebpb
T15974 515-523 Protein denotes SerpinB2
T15973 414-442 Protein denotes SerpinB2 luciferase reporter
T15972 334-342 Protein denotes SerpinB2
T15971 293-300 Protein denotes C/EBP-β
T15970 471-476 Protein denotes Cebpb
T15969 458-463 Protein denotes Cebpb
T15968 220-228 Protein denotes SerpinB2
T15967 153-160 Protein denotes C/EBP-β
T15966 27-35 Protein denotes SerpinB2
T15965 6-13 Protein denotes C/EBP-β
R11759 T15965 T15980 themeOf C/EBP-β,binds
R11760 T15966 T15980 themeOf SerpinB2,binds
R11761 T15967 T15982 causeOf C/EBP-β,essential
R11762 T15968 T15981 themeOf SerpinB2,transcription
R11763 T15974 T15983 themeOf SerpinB2,increased
R11764 T15974 T15984 themeOf SerpinB2,abrogated
R11765 T15978 T15985 themeOf SerpinB2,LPS-induced
R11766 T15981 T15982 themeOf transcription,essential

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T16105 0-106 Binding denotes Since C/EBP-β binds to the SerpinB2 proximal promoter in an LPS-inducible manner both in vitro and in vivo
T16104 500-541 Positive_regulation denotes LPS-stimulated SerpinB2 promoter activity
T16103 301-351 Regulation denotes to direct transcription from the SerpinB2 proximal
T16101 480-484 Protein denotes MEFs
T16100 153-160 Protein denotes C/EBP-β
T16099 458-463 Protein denotes Cebpb
T16098 330-351 Protein denotes the SerpinB2 proximal
T16097 6-13 Protein denotes C/EBP-β
T16096 241-246 Entity denotes cells
T16095 710-718 Entity denotes promoter
T16092 352-360 Entity denotes promoter
T16091 398-402 Protein denotes GLmP
T16090 582-586 Protein denotes MEFs
T16089 619-622 Protein denotes Fig
T16088 216-237 Entity denotes the SerpinB2 promoter
T16087 500-514 Entity denotes LPS-stimulated
T16086 515-523 Protein denotes SerpinB2
T16085 471-477 Protein denotes Cebpb−
T16084 640-663 Protein denotes that endogenous C/EBP-β
T16083 613-617 Protein denotes MEFs
T16082 220-228 Protein denotes SerpinB2
T16081 680-727 Protein denotes LPS-induced SerpinB2 proximal promoter activity
T16080 279-300 Protein denotes of endogenous C/EBP-β
T16079 680-691 Entity denotes LPS-induced
T16078 27-35 Protein denotes SerpinB2
T16077 515-532 Entity denotes SerpinB2 promoter
T16076 604-610 Protein denotes Cebpb−
T16075 20-53 Entity denotes to the SerpinB2 proximal promoter
T16074 262-265 Entity denotes LPS
T16072 414-442 Protein denotes SerpinB2 luciferase reporter
R11800 T16075 T16078 partOf to the SerpinB2 proximal promoter,SerpinB2
R11801 T16075 T16105 themeOf to the SerpinB2 proximal promoter,Since C/EBP-β binds to the SerpinB2 proximal promoter in an LPS-inducible manner both in vitro and in vivo
R11802 T16077 T16086 partOf SerpinB2 promoter,SerpinB2
R11803 T16087 T16104 causeOf LPS-stimulated,LPS-stimulated SerpinB2 promoter activity
R11804 T16088 T16082 partOf the SerpinB2 promoter,SerpinB2
R11806 T16097 T16105 themeOf C/EBP-β,Since C/EBP-β binds to the SerpinB2 proximal promoter in an LPS-inducible manner both in vitro and in vivo

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T16048 667-675 Positive_regulation denotes required
T16047 591-600 Negative_regulation denotes abrogated
T16046 560-569 Positive_regulation denotes increased
T16045 692-718 Protein denotes SerpinB2 proximal promoter
T16044 656-663 Protein denotes C/EBP-β
T16043 573-586 Protein denotes Cebpb+/+ MEFs
T16042 515-532 Protein denotes SerpinB2 promoter
T16041 311-324 Transcription denotes transcription
T16040 471-484 Protein denotes Cebpb−/− MEFs
T16039 458-463 Protein denotes Cebpb
T16038 414-433 Protein denotes SerpinB2 luciferase
T16037 334-360 Protein denotes SerpinB2 proximal promoter
T16036 293-300 Protein denotes C/EBP-β
T16035 197-210 Transcription denotes transcription
T16034 14-19 Binding denotes binds
T16033 14-19 Binding denotes binds
T16032 220-237 Protein denotes SerpinB2 promoter
T16031 153-160 Protein denotes C/EBP-β
T16030 27-53 Protein denotes SerpinB2 proximal promoter
T16029 6-13 Protein denotes C/EBP-β
R11781 T16029 T16033 themeOf C/EBP-β,binds
R11782 T16029 T16034 themeOf C/EBP-β,binds
R11783 T16030 T16034 themeOf SerpinB2 proximal promoter,binds
R11784 T16032 T16035 themeOf SerpinB2 promoter,transcription
R11785 T16037 T16041 themeOf SerpinB2 proximal promoter,transcription
R11786 T16042 T16047 themeOf SerpinB2 promoter,abrogated
R11787 T16043 T16046 themeOf Cebpb+/+ MEFs,increased
R11788 T16044 T16048 causeOf C/EBP-β,required
R11789 T16045 T16048 themeOf SerpinB2 proximal promoter,required

testone

Id Subject Object Predicate Lexical cue
T15670 591-600 Negative_regulation denotes abrogated
T15669 377-389 Gene_expression denotes transfection
T15668 352-360 Entity denotes promoter
T15667 311-324 Transcription denotes transcription
T15666 45-53 Entity denotes promoter
T15665 36-44 Entity denotes proximal
T15664 14-19 Binding denotes binds
T15663 692-700 Protein denotes SerpinB2
T15662 656-663 Protein denotes C/EBP-β
T15661 604-609 Protein denotes Cebpb
T15660 573-578 Protein denotes Cebpb
T15659 515-523 Protein denotes SerpinB2
T15658 471-476 Protein denotes Cebpb
T15657 458-463 Protein denotes Cebpb
T15656 414-442 Protein denotes SerpinB2 luciferase reporter
T15655 334-342 Protein denotes SerpinB2
T15654 293-300 Protein denotes C/EBP-β
T15653 220-228 Protein denotes SerpinB2
T15652 153-160 Protein denotes C/EBP-β
T15651 27-35 Protein denotes SerpinB2
T15650 6-13 Protein denotes C/EBP-β
R11580 T15650 T15664 themeOf C/EBP-β,binds
R11581 T15654 T15667 themeOf C/EBP-β,transcription
R11582 T15656 T15669 themeOf SerpinB2 luciferase reporter,transfection
R11583 T15666 T15664 themeOf promoter,binds
R11584 T15668 T15667 themeOf promoter,transcription

test3

Id Subject Object Predicate Lexical cue
T15693 153-160 Protein denotes C/EBP-β
T15692 45-53 Entity denotes promoter
T15691 27-35 Protein denotes SerpinB2
T15690 14-19 Binding denotes binds
T15689 6-13 Protein denotes C/EBP-β
T15686 692-700 Protein denotes SerpinB2
T15685 656-663 Protein denotes C/EBP-β
T15684 604-609 Protein denotes Cebpb
T15683 573-578 Protein denotes Cebpb
T15682 515-523 Protein denotes SerpinB2
T15681 471-476 Protein denotes Cebpb
T15680 458-463 Protein denotes Cebpb
T15679 414-442 Protein denotes SerpinB2 luciferase reporter
T15678 334-342 Protein denotes SerpinB2
T15677 293-300 Protein denotes C/EBP-β
T15676 220-228 Protein denotes SerpinB2
T15675 153-160 Protein denotes C/EBP-β
T15674 27-35 Protein denotes SerpinB2
T15673 6-13 Protein denotes C/EBP-β
T15709 692-700 Protein denotes SerpinB2
T15708 684-691 Positive_regulation denotes induced
T15707 656-663 Protein denotes C/EBP-β
T15706 604-609 Protein denotes Cebpb
T15705 573-578 Protein denotes Cebpb
T15704 515-523 Protein denotes SerpinB2
T15703 504-514 Positive_regulation denotes stimulated
T15702 471-476 Protein denotes Cebpb
T15701 458-463 Protein denotes Cebpb
T15700 414-442 Protein denotes SerpinB2 luciferase reporter
T15699 334-342 Protein denotes SerpinB2
T15698 311-324 Transcription denotes transcription
T15697 293-300 Protein denotes C/EBP-β
T15696 250-258 Positive_regulation denotes response
T15695 220-228 Protein denotes SerpinB2
T15694 197-210 Transcription denotes transcription
R11585 T15689 T15690 themeOf C/EBP-β,binds
R11586 T15691 T15690 themeOf SerpinB2,binds
R11587 T15692 T15690 themeOf promoter,binds
R11588 T15695 T15694 themeOf SerpinB2,transcription
R11589 T15699 T15698 themeOf SerpinB2,transcription