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PMC:3589482 / 35152-35341 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T25813 188-189 . denotes .
T25812 187-188 -RRB- denotes )
T25811 183-187 CD denotes T217
T25810 182-183 -LRB- denotes (
T25809 180-181 NN denotes β
T25808 179-180 : denotes -
T25807 172-179 NN denotes p-C/EBP
T25806 169-171 CC denotes or
T25805 167-168 NN denotes β
T25804 166-167 : denotes -
T25803 161-166 NNP denotes C/EBP
T25802 153-160 IN denotes against
T25801 142-152 NNS denotes antibodies
T25800 136-141 VBG denotes using
T25799 126-135 VBN denotes performed
T25798 106-125 NN denotes immunoprecipitation
T25797 96-105 NN denotes chromatin
T25796 92-95 CC denotes and
T25795 86-91 NNS denotes times
T25794 76-85 JJ denotes indicated
T25793 72-75 DT denotes the
T25792 68-71 IN denotes for
T25791 64-67 NNP denotes LPS
T25790 61-63 IN denotes of
T25789 53-60 NN denotes absence
T25788 50-52 CC denotes or
T25787 41-49 NN denotes presence
T25786 37-40 DT denotes the
T25785 34-36 IN denotes in
T25784 26-33 VBN denotes treated
T25783 21-25 VBD denotes were
T25782 9-20 NNS denotes macrophages
T25780 0-6 CD denotes RAW264
T25781 6-8 CD denotes .7
R18379 T25780 T25782 nummod RAW264,macrophages
R18380 T25781 T25782 nummod .7,macrophages
R18381 T25782 T25784 nsubjpass macrophages,treated
R18382 T25783 T25784 auxpass were,treated
R18383 T25784 T25784 ROOT treated,treated
R18384 T25785 T25784 prep in,treated
R18385 T25786 T25787 det the,presence
R18386 T25787 T25785 pobj presence,in
R18387 T25788 T25787 cc or,presence
R18388 T25789 T25787 conj absence,presence
R18389 T25790 T25789 prep of,absence
R18390 T25791 T25790 pobj LPS,of
R18391 T25792 T25784 prep for,treated
R18392 T25793 T25795 det the,times
R18393 T25794 T25795 amod indicated,times
R18394 T25795 T25792 pobj times,for
R18395 T25796 T25795 cc and,times
R18396 T25797 T25798 compound chromatin,immunoprecipitation
R18397 T25798 T25799 nsubj immunoprecipitation,performed
R18398 T25799 T25784 advcl performed,treated
R18399 T25800 T25799 advcl using,performed
R18400 T25801 T25800 dobj antibodies,using
R18401 T25802 T25800 prep against,using
R18402 T25803 T25802 pobj C/EBP,against
R18403 T25804 T25805 punct -,β
R18404 T25805 T25800 conj β,using
R18405 T25806 T25805 cc or,β
R18406 T25807 T25805 conj p-C/EBP,β
R18407 T25808 T25809 punct -,β
R18408 T25809 T25805 appos β,β
R18409 T25810 T25809 punct (,β
R18410 T25811 T25809 appos T217,β
R18411 T25812 T25809 punct ),β
R18412 T25813 T25784 punct .,treated

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T25454 187-188 -RRB- denotes )
T25453 183-187 NN denotes T217
T25452 182-183 -LRB- denotes (
T25451 172-181 NN denotes p-C/EBP-β
T25450 169-171 CC denotes or
T25449 161-168 NN denotes C/EBP-β
T25448 153-160 IN denotes against
T25447 142-152 NN denotes antibodies
T25446 136-141 VB denotes using
T25445 126-135 VB denotes performed
T25444 106-125 NN denotes immunoprecipitation
T25443 96-105 NN denotes chromatin
T25442 92-95 CC denotes and
T25441 86-91 NN denotes times
T25440 76-85 VB denotes indicated
T25439 72-75 DT denotes the
T25438 68-71 IN denotes for
T25437 64-67 NN denotes LPS
T25436 61-63 IN denotes of
T25435 53-60 NN denotes absence
T25434 50-52 CC denotes or
T25433 41-49 NN denotes presence
T25432 37-40 DT denotes the
T25431 34-36 IN denotes in
T25430 26-33 VB denotes treated
T25429 21-25 VB denotes were
T25428 9-20 NN denotes macrophages
T25427 0-8 NN denotes RAW264.7
R18168 T25428 T25427 arg1Of macrophages,RAW264.7
R18169 T25428 T25429 arg1Of macrophages,were
R18170 T25428 T25430 arg2Of macrophages,treated
R18171 T25430 T25429 arg2Of treated,were
R18172 T25430 T25431 arg1Of treated,in
R18173 T25430 T25446 modOf treated,using
R18174 T25433 T25434 arg1Of presence,or
R18175 T25434 T25431 arg2Of or,in
R18176 T25434 T25432 arg1Of or,the
R18177 T25434 T25436 arg1Of or,of
R18178 T25434 T25438 arg1Of or,for
R18179 T25435 T25434 arg2Of absence,or
R18180 T25437 T25436 arg2Of LPS,of
R18181 T25441 T25442 arg1Of times,and
R18182 T25443 T25442 arg2Of chromatin,and
R18183 T25444 T25438 arg2Of immunoprecipitation,for
R18184 T25444 T25439 arg1Of immunoprecipitation,the
R18185 T25444 T25440 arg2Of immunoprecipitation,indicated
R18186 T25444 T25441 arg1Of immunoprecipitation,times
R18187 T25444 T25443 arg1Of immunoprecipitation,chromatin
R18188 T25444 T25445 arg2Of immunoprecipitation,performed
R18189 T25446 T25448 arg1Of using,against
R18190 T25447 T25446 arg2Of antibodies,using
R18191 T25449 T25450 arg1Of C/EBP-β,or
R18192 T25450 T25448 arg2Of or,against
R18193 T25450 T25452 arg1Of or,(
R18194 T25451 T25450 arg2Of p-C/EBP-β,or
R18195 T25453 T25452 arg2Of T217,(
R18196 T25454 T25452 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T25353 172-188 Protein denotes p-C/EBP-β (T217)
T25352 161-168 Protein denotes C/EBP-β

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T25607 174-181 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T25606 161-168 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β

GO-MF

Id Subject Object Predicate Lexical cue
T25367 142-152 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies

GO-CC

Id Subject Object Predicate Lexical cue
T25379 142-152 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T25376 142-152 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T25373 96-105 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin

sentences

Id Subject Object Predicate Lexical cue
T25324 0-189 Sentence denotes RAW264.7 macrophages were treated in the presence or absence of LPS for the indicated times and chromatin immunoprecipitation performed using antibodies against C/EBP-β or p-C/EBP-β (T217).
T214 0-189 Sentence denotes RAW264.7 macrophages were treated in the presence or absence of LPS for the indicated times and chromatin immunoprecipitation performed using antibodies against C/EBP-β or p-C/EBP-β (T217).

simple1

Id Subject Object Predicate Lexical cue
T25387 172-188 Protein denotes p-C/EBP-β (T217)
T25386 161-168 Protein denotes C/EBP-β

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T25594 172-188 Protein denotes p-C/EBP-β (T217)
T25593 161-168 Protein denotes C/EBP-β

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T25649 172-188 Protein denotes p-C/EBP-β (T217)
T25648 161-168 Protein denotes C/EBP-β

DLUT931

Id Subject Object Predicate Lexical cue
T25620 172-188 Protein denotes p-C/EBP-β (T217)
T25619 161-168 Protein denotes C/EBP-β

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T25738 96-105 Entity denotes chromatin
T25735 142-152 Entity denotes antibodies
T25723 61-67 Entity denotes of LPS
T25721 161-168 Protein denotes C/EBP-β
T25719 183-187 Entity denotes T217
T25711 172-181 Protein denotes p-C/EBP-β
T25705 0-20 Entity denotes RAW264.7 macrophages

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T25666 183-187 Protein denotes T217
T25665 172-181 Protein denotes p-C/EBP-β
T25664 161-168 Protein denotes C/EBP-β

testone

Id Subject Object Predicate Lexical cue
T25280 172-188 Protein denotes p-C/EBP-β (T217)
T25279 161-168 Protein denotes C/EBP-β

test3

Id Subject Object Predicate Lexical cue
T25311 161-168 Protein denotes C/EBP-β
T25298 172-188 Protein denotes p-C/EBP-β (T217)
T25297 161-168 Protein denotes C/EBP-β