PMC:3589482 / 349-615 JSONTXT

{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T854","span":{"begin":245,"end":258},"obj":"JJ"},{"id":"T853","span":{"begin":241,"end":244},"obj":"DT"},{"id":"T852","span":{"begin":237,"end":240},"obj":"VB"},{"id":"T851","span":{"begin":234,"end":236},"obj":"TO"},{"id":"T850","span":{"begin":232,"end":233},"obj":"."},{"id":"T849","span":{"begin":221,"end":232},"obj":"NNS"},{"id":"T848","span":{"begin":214,"end":220},"obj":"JJ"},{"id":"T847","span":{"begin":211,"end":213},"obj":"IN"},{"id":"T846","span":{"begin":207,"end":210},"obj":"NNS"},{"id":"T845","span":{"begin":204,"end":206},"obj":"CD"},{"id":"T844","span":{"begin":201,"end":203},"obj":"IN"},{"id":"T843","span":{"begin":194,"end":200},"obj":"NN"},{"id":"T842","span":{"begin":192,"end":193},"obj":"DT"},{"id":"T841","span":{"begin":187,"end":191},"obj":"IN"},{"id":"T840","span":{"begin":177,"end":186},"obj":"JJ"},{"id":"T839","span":{"begin":176,"end":177},"obj":"CD"},{"id":"T838","span":{"begin":173,"end":175},"obj":"IN"},{"id":"T837","span":{"begin":171,"end":172},"obj":"-RRB-"},{"id":"T836","span":{"begin":167,"end":171},"obj":"CD"},{"id":"T835","span":{"begin":166,"end":167},"obj":"-LRB-"},{"id":"T834","span":{"begin":164,"end":165},"obj":"CD"},{"id":"T833","span":{"begin":155,"end":163},"obj":"NN"},{"id":"T832","span":{"begin":145,"end":154},"obj":"JJ"},{"id":"T831","span":{"begin":141,"end":144},"obj":"DT"},{"id":"T830","span":{"begin":137,"end":140},"obj":"IN"},{"id":"T829","span":{"begin":126,"end":136},"obj":"NN"},{"id":"T828","span":{"begin":117,"end":125},"obj":"NNP"},{"id":"T827","span":{"begin":110,"end":116},"obj":"VB"},{"id":"T826","span":{"begin":106,"end":109},"obj":"MD"},{"id":"T825","span":{"begin":104,"end":105},"obj":","},{"id":"T824","span":{"begin":95,"end":104},"obj":"NN"},{"id":"T823","span":{"begin":85,"end":94},"obj":"JJ"},{"id":"T822","span":{"begin":78,"end":84},"obj":"JJ"},{"id":"T821","span":{"begin":76,"end":77},"obj":"DT"},{"id":"T820","span":{"begin":74,"end":75},"obj":","},{"id":"T819","span":{"begin":73,"end":74},"obj":"-RRB-"},{"id":"T818","span":{"begin":70,"end":73},"obj":"NNP"},{"id":"T817","span":{"begin":69,"end":70},"obj":"-LRB-"},{"id":"T816","span":{"begin":50,"end":68},"obj":"NNP"},{"id":"T815","span":{"begin":48,"end":49},"obj":"."},{"id":"T814","span":{"begin":38,"end":48},"obj":"NNS"},{"id":"T813","span":{"begin":26,"end":37},"obj":"NN"},{"id":"T812","span":{"begin":23,"end":25},"obj":"IN"},{"id":"T811","span":{"begin":12,"end":22},"obj":"NN"},{"id":"T810","span":{"begin":8,"end":11},"obj":"CC"},{"id":"T809","span":{"begin":6,"end":7},"obj":","}],"relations":[{"id":"R399","pred":"prep","subj":"T812","obj":"T811"},{"id":"R400","pred":"compound","subj":"T813","obj":"T814"},{"id":"R401","pred":"pobj","subj":"T814","obj":"T812"},{"id":"R403","pred":"npadvmod","subj":"T816","obj":"T827"},{"id":"R404","pred":"punct","subj":"T817","obj":"T818"},{"id":"R405","pred":"appos","subj":"T818","obj":"T816"},{"id":"R406","pred":"punct","subj":"T819","obj":"T816"},{"id":"R407","pred":"punct","subj":"T820","obj":"T816"},{"id":"R408","pred":"det","subj":"T821","obj":"T824"},{"id":"R409","pred":"amod","subj":"T822","obj":"T824"},{"id":"R410","pred":"amod","subj":"T823","obj":"T824"},{"id":"R411","pred":"appos","subj":"T824","obj":"T816"},{"id":"R412","pred":"punct","subj":"T825","obj":"T827"},{"id":"R413","pred":"aux","subj":"T826","obj":"T827"},{"id":"R414","pred":"ROOT","subj":"T827","obj":"T827"},{"id":"R415","pred":"compound","subj":"T828","obj":"T829"},{"id":"R416","pred":"dobj","subj":"T829","obj":"T827"},{"id":"R417","pred":"prep","subj":"T830","obj":"T827"},{"id":"R418","pred":"det","subj":"T831","obj":"T833"},{"id":"R419","pred":"amod","subj":"T832","obj":"T833"},{"id":"R420","pred":"pobj","subj":"T833","obj":"T830"},{"id":"R421","pred":"nummod","subj":"T834","obj":"T833"},{"id":"R422","pred":"punct","subj":"T835","obj":"T833"},{"id":"R423","pred":"appos","subj":"T836","obj":"T833"},{"id":"R424","pred":"punct","subj":"T837","obj":"T833"},{"id":"R425","pred":"prep","subj":"T838","obj":"T827"},{"id":"R426","pred":"pobj","subj":"T839","obj":"T838"},{"id":"R427","pred":"advcl","subj":"T840","obj":"T827"},{"id":"R428","pred":"prep","subj":"T841","obj":"T840"},{"id":"R429","pred":"det","subj":"T842","obj":"T843"},{"id":"R430","pred":"pobj","subj":"T843","obj":"T841"},{"id":"R431","pred":"prep","subj":"T844","obj":"T843"},{"id":"R432","pred":"nummod","subj":"T845","obj":"T846"},{"id":"R433","pred":"pobj","subj":"T846","obj":"T844"},{"id":"R434","pred":"prep","subj":"T847","obj":"T846"},{"id":"R435","pred":"amod","subj":"T848","obj":"T849"},{"id":"R436","pred":"pobj","subj":"T849","obj":"T847"},{"id":"R437","pred":"punct","subj":"T850","obj":"T827"},{"id":"R438","pred":"aux","subj":"T851","obj":"T852"}],"text":"rvival, and inhibition of plasminogen activators. Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs in murine macrophages. To map the LPS-regulated SerpinB"}

{"project":"pmc-enju-pas","denotations":[{"id":"T307","span":{"begin":204,"end":206},"obj":"CD"},{"id":"T306","span":{"begin":201,"end":203},"obj":"IN"},{"id":"T305","span":{"begin":194,"end":200},"obj":"NN"},{"id":"T304","span":{"begin":192,"end":193},"obj":"DT"},{"id":"T303","span":{"begin":187,"end":191},"obj":"IN"},{"id":"T302","span":{"begin":176,"end":186},"obj":"RB"},{"id":"T301","span":{"begin":173,"end":175},"obj":"IN"},{"id":"T300","span":{"begin":171,"end":172},"obj":"-RRB-"},{"id":"T299","span":{"begin":167,"end":171},"obj":"NN"},{"id":"T298","span":{"begin":166,"end":167},"obj":"-LRB-"},{"id":"T297","span":{"begin":164,"end":165},"obj":"CD"},{"id":"T296","span":{"begin":155,"end":163},"obj":"NN"},{"id":"T295","span":{"begin":145,"end":154},"obj":"JJ"},{"id":"T294","span":{"begin":141,"end":144},"obj":"DT"},{"id":"T293","span":{"begin":137,"end":140},"obj":"IN"},{"id":"T292","span":{"begin":126,"end":136},"obj":"NN"},{"id":"T291","span":{"begin":117,"end":125},"obj":"NN"},{"id":"T290","span":{"begin":110,"end":116},"obj":"VB"},{"id":"T289","span":{"begin":106,"end":109},"obj":"MD"},{"id":"T288","span":{"begin":104,"end":105},"obj":"-COMMA-"},{"id":"T287","span":{"begin":95,"end":104},"obj":"NN"},{"id":"T286","span":{"begin":85,"end":94},"obj":"JJ"},{"id":"T285","span":{"begin":78,"end":84},"obj":"JJ"},{"id":"T284","span":{"begin":76,"end":77},"obj":"DT"},{"id":"T283","span":{"begin":74,"end":75},"obj":"-COMMA-"},{"id":"T282","span":{"begin":73,"end":74},"obj":"-RRB-"},{"id":"T281","span":{"begin":70,"end":73},"obj":"NN"},{"id":"T280","span":{"begin":69,"end":70},"obj":"-LRB-"},{"id":"T279","span":{"begin":50,"end":68},"obj":"NN"},{"id":"T278","span":{"begin":38,"end":48},"obj":"NN"},{"id":"T277","span":{"begin":26,"end":37},"obj":"NN"},{"id":"T276","span":{"begin":23,"end":25},"obj":"IN"},{"id":"T275","span":{"begin":12,"end":22},"obj":"NN"},{"id":"T274","span":{"begin":8,"end":11},"obj":"CC"},{"id":"T273","span":{"begin":6,"end":7},"obj":"-COMMA-"},{"id":"T315","span":{"begin":245,"end":258},"obj":"JJ"},{"id":"T314","span":{"begin":241,"end":244},"obj":"DT"},{"id":"T313","span":{"begin":237,"end":240},"obj":"VB"},{"id":"T312","span":{"begin":234,"end":236},"obj":"TO"},{"id":"T311","span":{"begin":221,"end":232},"obj":"NN"},{"id":"T310","span":{"begin":214,"end":220},"obj":"JJ"},{"id":"T309","span":{"begin":211,"end":213},"obj":"IN"},{"id":"T308","span":{"begin":207,"end":210},"obj":"NN"}],"relations":[{"id":"R85","pred":"arg1Of","subj":"T274","obj":"T273"},{"id":"R86","pred":"arg2Of","subj":"T275","obj":"T274"},{"id":"R87","pred":"arg1Of","subj":"T275","obj":"T276"},{"id":"R88","pred":"arg2Of","subj":"T278","obj":"T276"},{"id":"R89","pred":"arg1Of","subj":"T278","obj":"T277"},{"id":"R90","pred":"arg1Of","subj":"T279","obj":"T280"},{"id":"R91","pred":"arg1Of","subj":"T279","obj":"T283"},{"id":"R92","pred":"arg1Of","subj":"T279","obj":"T289"},{"id":"R93","pred":"arg1Of","subj":"T279","obj":"T290"},{"id":"R94","pred":"arg2Of","subj":"T281","obj":"T280"},{"id":"R95","pred":"arg3Of","subj":"T282","obj":"T280"},{"id":"R96","pred":"arg2Of","subj":"T287","obj":"T283"},{"id":"R97","pred":"arg1Of","subj":"T287","obj":"T284"},{"id":"R98","pred":"arg1Of","subj":"T287","obj":"T285"},{"id":"R99","pred":"arg1Of","subj":"T287","obj":"T286"},{"id":"R100","pred":"arg1Of","subj":"T290","obj":"T288"},{"id":"R101","pred":"arg2Of","subj":"T290","obj":"T289"},{"id":"R102","pred":"arg1Of","subj":"T290","obj":"T293"},{"id":"R103","pred":"arg1Of","subj":"T290","obj":"T301"},{"id":"R104","pred":"arg1Of","subj":"T290","obj":"T303"},{"id":"R105","pred":"arg2Of","subj":"T292","obj":"T290"},{"id":"R106","pred":"arg1Of","subj":"T292","obj":"T291"},{"id":"R107","pred":"arg2Of","subj":"T296","obj":"T293"},{"id":"R108","pred":"arg1Of","subj":"T296","obj":"T294"},{"id":"R109","pred":"arg1Of","subj":"T296","obj":"T295"},{"id":"R110","pred":"arg1Of","subj":"T296","obj":"T297"},{"id":"R111","pred":"arg1Of","subj":"T296","obj":"T298"},{"id":"R112","pred":"arg2Of","subj":"T299","obj":"T298"},{"id":"R113","pred":"arg3Of","subj":"T300","obj":"T298"},{"id":"R114","pred":"arg2Of","subj":"T302","obj":"T301"},{"id":"R115","pred":"arg2Of","subj":"T305","obj":"T303"},{"id":"R116","pred":"arg1Of","subj":"T305","obj":"T304"},{"id":"R117","pred":"arg1Of","subj":"T305","obj":"T306"},{"id":"R118","pred":"arg1Of","subj":"T305","obj":"T309"},{"id":"R119","pred":"arg2Of","subj":"T308","obj":"T306"},{"id":"R120","pred":"arg1Of","subj":"T308","obj":"T307"},{"id":"R121","pred":"arg2Of","subj":"T311","obj":"T309"},{"id":"R122","pred":"arg1Of","subj":"T311","obj":"T310"},{"id":"R123","pred":"arg1Of","subj":"T313","obj":"T312"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"rvival, and inhibition of plasminogen activators. Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs in murine macrophages. To map the LPS-regulated SerpinB"}

{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T162","span":{"begin":117,"end":125},"obj":"Protein"},{"id":"T163","span":{"begin":145,"end":165},"obj":"Protein"},{"id":"T164","span":{"begin":167,"end":171},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"rvival, and inhibition of plasminogen activators. Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs in murine macrophages. To map the LPS-regulated SerpinB"}

{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T539","span":{"begin":167,"end":171},"obj":"http://www.uniprot.org/uniprot/O00206"},{"id":"T531","span":{"begin":117,"end":125},"obj":"http://www.uniprot.org/uniprot/P05120"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"rvival, and inhibition of plasminogen activators. Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs in murine macrophages. To map the LPS-regulated SerpinB"}

{"project":"GO-BP","denotations":[{"id":"T183","span":{"begin":12,"end":48},"obj":"http://purl.obolibrary.org/obo/GO_0010757"},{"id":"T179","span":{"begin":26,"end":48},"obj":"http://purl.obolibrary.org/obo/GO_0031639"}],"text":"rvival, and inhibition of plasminogen activators. Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs in murine macrophages. To map the LPS-regulated SerpinB"}

{"project":"sentences","denotations":[{"id":"T101","span":{"begin":50,"end":233},"obj":"Sentence"},{"id":"T5","span":{"begin":50,"end":233},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"rvival, and inhibition of plasminogen activators. Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs in murine macrophages. To map the LPS-regulated SerpinB"}

{"project":"simple1","denotations":[{"id":"T215","span":{"begin":117,"end":125},"obj":"Protein"},{"id":"T216","span":{"begin":145,"end":165},"obj":"Protein"},{"id":"T217","span":{"begin":167,"end":171},"obj":"Protein"}],"text":"rvival, and inhibition of plasminogen activators. Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs in murine macrophages. To map the LPS-regulated SerpinB"}

{"project":"BioNLP16_DUT","denotations":[{"id":"T514","span":{"begin":110,"end":116},"obj":"Positive_regulation"},{"id":"T513","span":{"begin":126,"end":136},"obj":"Gene_expression"},{"id":"T498","span":{"begin":167,"end":171},"obj":"Protein"},{"id":"T496","span":{"begin":117,"end":125},"obj":"Protein"},{"id":"T497","span":{"begin":145,"end":165},"obj":"Protein"}],"relations":[{"id":"R308","pred":"themeOf","subj":"T513","obj":"T514"},{"id":"R680","pred":"themeOf","subj":"T496","obj":"T513"}],"text":"rvival, and inhibition of plasminogen activators. Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs in murine macrophages. To map the LPS-regulated SerpinB"}

{"project":"BioNLP16_Messiy","denotations":[{"id":"T606","span":{"begin":117,"end":125},"obj":"Protein"},{"id":"T607","span":{"begin":145,"end":165},"obj":"Protein"},{"id":"T608","span":{"begin":167,"end":171},"obj":"Protein"},{"id":"T623","span":{"begin":126,"end":136},"obj":"Gene_expression"},{"id":"T624","span":{"begin":110,"end":116},"obj":"Positive_regulation"}],"relations":[{"id":"R718","pred":"themeOf","subj":"T606","obj":"T623"},{"id":"R720","pred":"causeOf","subj":"T607","obj":"T624"},{"id":"R733","pred":"themeOf","subj":"T623","obj":"T624"}],"text":"rvival, and inhibition of plasminogen activators. Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs in murine macrophages. To map the LPS-regulated SerpinB"}

{"project":"DLUT931","denotations":[{"id":"T572","span":{"begin":117,"end":125},"obj":"Protein"},{"id":"T573","span":{"begin":145,"end":165},"obj":"Protein"},{"id":"T574","span":{"begin":167,"end":171},"obj":"Protein"},{"id":"T590","span":{"begin":126,"end":136},"obj":"Gene_expression"},{"id":"T591","span":{"begin":110,"end":116},"obj":"Positive_regulation"}],"relations":[{"id":"R685","pred":"themeOf","subj":"T572","obj":"T590"},{"id":"R686","pred":"causeOf","subj":"T573","obj":"T591"},{"id":"R693","pred":"themeOf","subj":"T590","obj":"T591"}],"text":"rvival, and inhibition of plasminogen activators. Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs in murine macrophages. To map the LPS-regulated SerpinB"}

{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T760","span":{"begin":204,"end":232},"obj":"Localization"},{"id":"T759","span":{"begin":117,"end":136},"obj":"Gene_expression"},{"id":"T750","span":{"begin":70,"end":73},"obj":"Entity"},{"id":"T748","span":{"begin":117,"end":125},"obj":"Protein"},{"id":"T709","span":{"begin":50,"end":75},"obj":"Entity"},{"id":"T711","span":{"begin":95,"end":104},"obj":"Entity"},{"id":"T714","span":{"begin":141,"end":172},"obj":"Protein"},{"id":"T715","span":{"begin":167,"end":171},"obj":"Protein"},{"id":"T719","span":{"begin":204,"end":232},"obj":"Protein"},{"id":"T724","span":{"begin":214,"end":232},"obj":"Entity"},{"id":"T733","span":{"begin":23,"end":48},"obj":"Entity"},{"id":"T741","span":{"begin":245,"end":258},"obj":"Entity"},{"id":"T745","span":{"begin":26,"end":37},"obj":"Protein"}],"relations":[{"id":"R348","pred":"themeOf","subj":"T748","obj":"T759"},{"id":"R721","pred":"themeOf","subj":"T719","obj":"T760"},{"id":"R723","pred":"locationOf","subj":"T724","obj":"T760"}],"text":"rvival, and inhibition of plasminogen activators. Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs in murine macrophages. To map the LPS-regulated SerpinB"}

{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T647","span":{"begin":110,"end":116},"obj":"Positive_regulation"},{"id":"T646","span":{"begin":126,"end":136},"obj":"Gene_expression"},{"id":"T645","span":{"begin":117,"end":125},"obj":"Protein"},{"id":"T644","span":{"begin":12,"end":22},"obj":"Negative_regulation"},{"id":"T641","span":{"begin":26,"end":48},"obj":"Protein"}],"relations":[{"id":"R323","pred":"themeOf","subj":"T641","obj":"T644"},{"id":"R324","pred":"themeOf","subj":"T645","obj":"T646"},{"id":"R325","pred":"themeOf","subj":"T646","obj":"T647"}],"text":"rvival, and inhibition of plasminogen activators. Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs in murine macrophages. To map the LPS-regulated SerpinB"}

{"project":"testone","denotations":[{"id":"T40","span":{"begin":126,"end":136},"obj":"Gene_expression"},{"id":"T39","span":{"begin":110,"end":116},"obj":"Positive_regulation"},{"id":"T27","span":{"begin":167,"end":171},"obj":"Protein"},{"id":"T26","span":{"begin":145,"end":165},"obj":"Protein"},{"id":"T25","span":{"begin":117,"end":125},"obj":"Protein"}],"relations":[{"id":"R3","pred":"equivalentTo","subj":"T27","obj":"T26"},{"id":"R8","pred":"themeOf","subj":"T40","obj":"T39"},{"id":"R2","pred":"themeOf","subj":"T25","obj":"T40"}],"text":"rvival, and inhibition of plasminogen activators. Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs in murine macrophages. To map the LPS-regulated SerpinB"}

{"project":"test3","denotations":[{"id":"T78","span":{"begin":167,"end":171},"obj":"Protein"},{"id":"T77","span":{"begin":145,"end":165},"obj":"Protein"},{"id":"T76","span":{"begin":126,"end":136},"obj":"Gene_expression"},{"id":"T75","span":{"begin":117,"end":125},"obj":"Protein"},{"id":"T74","span":{"begin":110,"end":116},"obj":"Positive_regulation"},{"id":"T56","span":{"begin":167,"end":171},"obj":"Protein"},{"id":"T55","span":{"begin":145,"end":165},"obj":"Protein"},{"id":"T54","span":{"begin":117,"end":125},"obj":"Protein"}],"relations":[{"id":"R17","pred":"themeOf","subj":"T75","obj":"T76"},{"id":"R18","pred":"themeOf","subj":"T76","obj":"T74"},{"id":"R19","pred":"equivalentTo","subj":"T78","obj":"T77"}],"text":"rvival, and inhibition of plasminogen activators. Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs in murine macrophages. To map the LPS-regulated SerpinB"}