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PMC:3589482 / 349-615 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T854 245-258 JJ denotes LPS-regulated
T853 241-244 DT denotes the
T852 237-240 VB denotes map
T851 234-236 TO denotes To
T850 232-233 . denotes .
T849 221-232 NNS denotes macrophages
T848 214-220 JJ denotes murine
T847 211-213 IN denotes in
T846 207-210 NNS denotes hrs
T845 204-206 CD denotes 24
T844 201-203 IN denotes of
T843 194-200 NN denotes period
T842 192-193 DT denotes a
T841 187-191 IN denotes over
T840 177-186 JJ denotes 1000-fold
T839 176-177 CD denotes ∼
T838 173-175 IN denotes by
T837 171-172 -RRB- denotes )
T836 167-171 CD denotes TLR4
T835 166-167 -LRB- denotes (
T834 164-165 CD denotes 4
T833 155-163 NN denotes receptor
T832 145-154 JJ denotes toll-like
T831 141-144 DT denotes the
T830 137-140 IN denotes via
T829 126-136 NN denotes expression
T828 117-125 NNP denotes SerpinB2
T827 110-116 VB denotes induce
T826 106-109 MD denotes can
T825 104-105 , denotes ,
T824 95-104 NN denotes endotoxin
T823 85-94 JJ denotes bacterial
T822 78-84 JJ denotes potent
T821 76-77 DT denotes a
T820 74-75 , denotes ,
T819 73-74 -RRB- denotes )
T818 70-73 NNP denotes LPS
T817 69-70 -LRB- denotes (
T816 50-68 NNP denotes Lipopolysaccharide
T815 48-49 . denotes .
T814 38-48 NNS denotes activators
T813 26-37 NN denotes plasminogen
T812 23-25 IN denotes of
T811 12-22 NN denotes inhibition
T810 8-11 CC denotes and
T809 6-7 , denotes ,
R399 T812 T811 prep of,inhibition
R400 T813 T814 compound plasminogen,activators
R401 T814 T812 pobj activators,of
R403 T816 T827 npadvmod Lipopolysaccharide,induce
R404 T817 T818 punct (,LPS
R405 T818 T816 appos LPS,Lipopolysaccharide
R406 T819 T816 punct ),Lipopolysaccharide
R407 T820 T816 punct ",",Lipopolysaccharide
R408 T821 T824 det a,endotoxin
R409 T822 T824 amod potent,endotoxin
R410 T823 T824 amod bacterial,endotoxin
R411 T824 T816 appos endotoxin,Lipopolysaccharide
R412 T825 T827 punct ",",induce
R413 T826 T827 aux can,induce
R414 T827 T827 ROOT induce,induce
R415 T828 T829 compound SerpinB2,expression
R416 T829 T827 dobj expression,induce
R417 T830 T827 prep via,induce
R418 T831 T833 det the,receptor
R419 T832 T833 amod toll-like,receptor
R420 T833 T830 pobj receptor,via
R421 T834 T833 nummod 4,receptor
R422 T835 T833 punct (,receptor
R423 T836 T833 appos TLR4,receptor
R424 T837 T833 punct ),receptor
R425 T838 T827 prep by,induce
R426 T839 T838 pobj ∼,by
R427 T840 T827 advcl 1000-fold,induce
R428 T841 T840 prep over,1000-fold
R429 T842 T843 det a,period
R430 T843 T841 pobj period,over
R431 T844 T843 prep of,period
R432 T845 T846 nummod 24,hrs
R433 T846 T844 pobj hrs,of
R434 T847 T846 prep in,hrs
R435 T848 T849 amod murine,macrophages
R436 T849 T847 pobj macrophages,in
R437 T850 T827 punct .,induce
R438 T851 T852 aux To,map

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T307 204-206 CD denotes 24
T306 201-203 IN denotes of
T305 194-200 NN denotes period
T304 192-193 DT denotes a
T303 187-191 IN denotes over
T302 176-186 RB denotes ∼1000-fold
T301 173-175 IN denotes by
T300 171-172 -RRB- denotes )
T299 167-171 NN denotes TLR4
T298 166-167 -LRB- denotes (
T297 164-165 CD denotes 4
T296 155-163 NN denotes receptor
T295 145-154 JJ denotes toll-like
T294 141-144 DT denotes the
T293 137-140 IN denotes via
T292 126-136 NN denotes expression
T291 117-125 NN denotes SerpinB2
T290 110-116 VB denotes induce
T289 106-109 MD denotes can
T288 104-105 -COMMA- denotes ,
T287 95-104 NN denotes endotoxin
T286 85-94 JJ denotes bacterial
T285 78-84 JJ denotes potent
T284 76-77 DT denotes a
T283 74-75 -COMMA- denotes ,
T282 73-74 -RRB- denotes )
T281 70-73 NN denotes LPS
T280 69-70 -LRB- denotes (
T279 50-68 NN denotes Lipopolysaccharide
T278 38-48 NN denotes activators
T277 26-37 NN denotes plasminogen
T276 23-25 IN denotes of
T275 12-22 NN denotes inhibition
T274 8-11 CC denotes and
T273 6-7 -COMMA- denotes ,
T315 245-258 JJ denotes LPS-regulated
T314 241-244 DT denotes the
T313 237-240 VB denotes map
T312 234-236 TO denotes To
T311 221-232 NN denotes macrophages
T310 214-220 JJ denotes murine
T309 211-213 IN denotes in
T308 207-210 NN denotes hrs
R85 T274 T273 arg1Of and,","
R86 T275 T274 arg2Of inhibition,and
R87 T275 T276 arg1Of inhibition,of
R88 T278 T276 arg2Of activators,of
R89 T278 T277 arg1Of activators,plasminogen
R90 T279 T280 arg1Of Lipopolysaccharide,(
R91 T279 T283 arg1Of Lipopolysaccharide,","
R92 T279 T289 arg1Of Lipopolysaccharide,can
R93 T279 T290 arg1Of Lipopolysaccharide,induce
R94 T281 T280 arg2Of LPS,(
R95 T282 T280 arg3Of ),(
R96 T287 T283 arg2Of endotoxin,","
R97 T287 T284 arg1Of endotoxin,a
R98 T287 T285 arg1Of endotoxin,potent
R99 T287 T286 arg1Of endotoxin,bacterial
R100 T290 T288 arg1Of induce,","
R101 T290 T289 arg2Of induce,can
R102 T290 T293 arg1Of induce,via
R103 T290 T301 arg1Of induce,by
R104 T290 T303 arg1Of induce,over
R105 T292 T290 arg2Of expression,induce
R106 T292 T291 arg1Of expression,SerpinB2
R107 T296 T293 arg2Of receptor,via
R108 T296 T294 arg1Of receptor,the
R109 T296 T295 arg1Of receptor,toll-like
R110 T296 T297 arg1Of receptor,4
R111 T296 T298 arg1Of receptor,(
R112 T299 T298 arg2Of TLR4,(
R113 T300 T298 arg3Of ),(
R114 T302 T301 arg2Of ∼1000-fold,by
R115 T305 T303 arg2Of period,over
R116 T305 T304 arg1Of period,a
R117 T305 T306 arg1Of period,of
R118 T305 T309 arg1Of period,in
R119 T308 T306 arg2Of hrs,of
R120 T308 T307 arg1Of hrs,24
R121 T311 T309 arg2Of macrophages,in
R122 T311 T310 arg1Of macrophages,murine
R123 T313 T312 arg1Of map,To

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T162 117-125 Protein denotes SerpinB2
T163 145-165 Protein denotes toll-like receptor 4
T164 167-171 Protein denotes TLR4

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T539 167-171 http://www.uniprot.org/uniprot/O00206 denotes TLR4
T531 117-125 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T183 12-48 http://purl.obolibrary.org/obo/GO_0010757 denotes inhibition of plasminogen activators
T179 26-48 http://purl.obolibrary.org/obo/GO_0031639 denotes plasminogen activators

sentences

Id Subject Object Predicate Lexical cue
T101 50-233 Sentence denotes Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs in murine macrophages.
T5 50-233 Sentence denotes Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs in murine macrophages.

simple1

Id Subject Object Predicate Lexical cue
T215 117-125 Protein denotes SerpinB2
T216 145-165 Protein denotes toll-like receptor 4
T217 167-171 Protein denotes TLR4

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T514 110-116 Positive_regulation denotes induce
T513 126-136 Gene_expression denotes expression
T498 167-171 Protein denotes TLR4
T496 117-125 Protein denotes SerpinB2
T497 145-165 Protein denotes toll-like receptor 4
R308 T513 T514 themeOf expression,induce
R680 T496 T513 themeOf SerpinB2,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T606 117-125 Protein denotes SerpinB2
T607 145-165 Protein denotes toll-like receptor 4
T608 167-171 Protein denotes TLR4
T623 126-136 Gene_expression denotes expression
T624 110-116 Positive_regulation denotes induce
R718 T606 T623 themeOf SerpinB2,expression
R720 T607 T624 causeOf toll-like receptor 4,induce
R733 T623 T624 themeOf expression,induce

DLUT931

Id Subject Object Predicate Lexical cue
T572 117-125 Protein denotes SerpinB2
T573 145-165 Protein denotes toll-like receptor 4
T574 167-171 Protein denotes TLR4
T590 126-136 Gene_expression denotes expression
T591 110-116 Positive_regulation denotes induce
R685 T572 T590 themeOf SerpinB2,expression
R686 T573 T591 causeOf toll-like receptor 4,induce
R693 T590 T591 themeOf expression,induce

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T760 204-232 Localization denotes 24 hrs in murine macrophages
T759 117-136 Gene_expression denotes SerpinB2 expression
T750 70-73 Entity denotes LPS
T748 117-125 Protein denotes SerpinB2
T709 50-75 Entity denotes Lipopolysaccharide (LPS),
T711 95-104 Entity denotes endotoxin
T714 141-172 Protein denotes the toll-like receptor 4 (TLR4)
T715 167-171 Protein denotes TLR4
T719 204-232 Protein denotes 24 hrs in murine macrophages
T724 214-232 Entity denotes murine macrophages
T733 23-48 Entity denotes of plasminogen activators
T741 245-258 Entity denotes LPS-regulated
T745 26-37 Protein denotes plasminogen
R348 T748 T759 themeOf SerpinB2,SerpinB2 expression
R721 T719 T760 themeOf 24 hrs in murine macrophages,24 hrs in murine macrophages
R723 T724 T760 locationOf murine macrophages,24 hrs in murine macrophages

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T647 110-116 Positive_regulation denotes induce
T646 126-136 Gene_expression denotes expression
T645 117-125 Protein denotes SerpinB2
T644 12-22 Negative_regulation denotes inhibition
T641 26-48 Protein denotes plasminogen activators
R323 T641 T644 themeOf plasminogen activators,inhibition
R324 T645 T646 themeOf SerpinB2,expression
R325 T646 T647 themeOf expression,induce

testone

Id Subject Object Predicate Lexical cue
T40 126-136 Gene_expression denotes expression
T39 110-116 Positive_regulation denotes induce
T27 167-171 Protein denotes TLR4
T26 145-165 Protein denotes toll-like receptor 4
T25 117-125 Protein denotes SerpinB2
R3 T27 T26 equivalentTo TLR4,toll-like receptor 4
R8 T40 T39 themeOf expression,induce
R2 T25 T40 themeOf SerpinB2,expression

test3

Id Subject Object Predicate Lexical cue
T78 167-171 Protein denotes TLR4
T77 145-165 Protein denotes toll-like receptor 4
T76 126-136 Gene_expression denotes expression
T75 117-125 Protein denotes SerpinB2
T74 110-116 Positive_regulation denotes induce
T56 167-171 Protein denotes TLR4
T55 145-165 Protein denotes toll-like receptor 4
T54 117-125 Protein denotes SerpinB2
R17 T75 T76 themeOf SerpinB2,expression
R18 T76 T74 themeOf expression,induce
R19 T78 T77 equivalentTo TLR4,toll-like receptor 4