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PMC:3589482 / 341-559 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T846 215-218 NNS denotes hrs
T845 212-214 CD denotes 24
T844 209-211 IN denotes of
T843 202-208 NN denotes period
T842 200-201 DT denotes a
T841 195-199 IN denotes over
T840 185-194 JJ denotes 1000-fold
T839 184-185 CD denotes ∼
T838 181-183 IN denotes by
T837 179-180 -RRB- denotes )
T836 175-179 CD denotes TLR4
T835 174-175 -LRB- denotes (
T834 172-173 CD denotes 4
T833 163-171 NN denotes receptor
T832 153-162 JJ denotes toll-like
T831 149-152 DT denotes the
T830 145-148 IN denotes via
T829 134-144 NN denotes expression
T828 125-133 NNP denotes SerpinB2
T827 118-124 VB denotes induce
T826 114-117 MD denotes can
T825 112-113 , denotes ,
T824 103-112 NN denotes endotoxin
T823 93-102 JJ denotes bacterial
T822 86-92 JJ denotes potent
T821 84-85 DT denotes a
T820 82-83 , denotes ,
T819 81-82 -RRB- denotes )
T818 78-81 NNP denotes LPS
T817 77-78 -LRB- denotes (
T816 58-76 NNP denotes Lipopolysaccharide
T815 56-57 . denotes .
T814 46-56 NNS denotes activators
T813 34-45 NN denotes plasminogen
T812 31-33 IN denotes of
T811 20-30 NN denotes inhibition
T810 16-19 CC denotes and
T809 14-15 , denotes ,
T808 6-14 NN denotes survival
R396 T809 T808 punct ",",survival
R397 T810 T808 cc and,survival
R398 T811 T808 conj inhibition,survival
R399 T812 T811 prep of,inhibition
R400 T813 T814 compound plasminogen,activators
R401 T814 T812 pobj activators,of
R403 T816 T827 npadvmod Lipopolysaccharide,induce
R404 T817 T818 punct (,LPS
R405 T818 T816 appos LPS,Lipopolysaccharide
R406 T819 T816 punct ),Lipopolysaccharide
R407 T820 T816 punct ",",Lipopolysaccharide
R408 T821 T824 det a,endotoxin
R409 T822 T824 amod potent,endotoxin
R410 T823 T824 amod bacterial,endotoxin
R411 T824 T816 appos endotoxin,Lipopolysaccharide
R412 T825 T827 punct ",",induce
R413 T826 T827 aux can,induce
R414 T827 T827 ROOT induce,induce
R415 T828 T829 compound SerpinB2,expression
R416 T829 T827 dobj expression,induce
R417 T830 T827 prep via,induce
R418 T831 T833 det the,receptor
R419 T832 T833 amod toll-like,receptor
R420 T833 T830 pobj receptor,via
R421 T834 T833 nummod 4,receptor
R422 T835 T833 punct (,receptor
R423 T836 T833 appos TLR4,receptor
R424 T837 T833 punct ),receptor
R425 T838 T827 prep by,induce
R426 T839 T838 pobj ∼,by
R427 T840 T827 advcl 1000-fold,induce
R428 T841 T840 prep over,1000-fold
R429 T842 T843 det a,period
R430 T843 T841 pobj period,over
R431 T844 T843 prep of,period
R432 T845 T846 nummod 24,hrs
R433 T846 T844 pobj hrs,of

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T307 212-214 CD denotes 24
T306 209-211 IN denotes of
T305 202-208 NN denotes period
T304 200-201 DT denotes a
T303 195-199 IN denotes over
T302 184-194 RB denotes ∼1000-fold
T301 181-183 IN denotes by
T300 179-180 -RRB- denotes )
T299 175-179 NN denotes TLR4
T298 174-175 -LRB- denotes (
T297 172-173 CD denotes 4
T296 163-171 NN denotes receptor
T295 153-162 JJ denotes toll-like
T294 149-152 DT denotes the
T293 145-148 IN denotes via
T292 134-144 NN denotes expression
T291 125-133 NN denotes SerpinB2
T290 118-124 VB denotes induce
T289 114-117 MD denotes can
T288 112-113 -COMMA- denotes ,
T287 103-112 NN denotes endotoxin
T286 93-102 JJ denotes bacterial
T285 86-92 JJ denotes potent
T284 84-85 DT denotes a
T283 82-83 -COMMA- denotes ,
T282 81-82 -RRB- denotes )
T281 78-81 NN denotes LPS
T280 77-78 -LRB- denotes (
T279 58-76 NN denotes Lipopolysaccharide
T278 46-56 NN denotes activators
T277 34-45 NN denotes plasminogen
T276 31-33 IN denotes of
T275 20-30 NN denotes inhibition
T274 16-19 CC denotes and
T273 14-15 -COMMA- denotes ,
T272 6-14 NN denotes survival
T308 215-218 NN denotes hrs
R85 T274 T273 arg1Of and,","
R86 T275 T274 arg2Of inhibition,and
R87 T275 T276 arg1Of inhibition,of
R88 T278 T276 arg2Of activators,of
R89 T278 T277 arg1Of activators,plasminogen
R90 T279 T280 arg1Of Lipopolysaccharide,(
R91 T279 T283 arg1Of Lipopolysaccharide,","
R92 T279 T289 arg1Of Lipopolysaccharide,can
R93 T279 T290 arg1Of Lipopolysaccharide,induce
R94 T281 T280 arg2Of LPS,(
R95 T282 T280 arg3Of ),(
R96 T287 T283 arg2Of endotoxin,","
R97 T287 T284 arg1Of endotoxin,a
R98 T287 T285 arg1Of endotoxin,potent
R99 T287 T286 arg1Of endotoxin,bacterial
R100 T290 T288 arg1Of induce,","
R101 T290 T289 arg2Of induce,can
R102 T290 T293 arg1Of induce,via
R103 T290 T301 arg1Of induce,by
R104 T290 T303 arg1Of induce,over
R105 T292 T290 arg2Of expression,induce
R106 T292 T291 arg1Of expression,SerpinB2
R107 T296 T293 arg2Of receptor,via
R108 T296 T294 arg1Of receptor,the
R109 T296 T295 arg1Of receptor,toll-like
R110 T296 T297 arg1Of receptor,4
R111 T296 T298 arg1Of receptor,(
R112 T299 T298 arg2Of TLR4,(
R113 T300 T298 arg3Of ),(
R114 T302 T301 arg2Of ∼1000-fold,by
R115 T305 T303 arg2Of period,over
R116 T305 T304 arg1Of period,a
R117 T305 T306 arg1Of period,of
R119 T308 T306 arg2Of hrs,of
R120 T308 T307 arg1Of hrs,24

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T162 125-133 Protein denotes SerpinB2
T163 153-173 Protein denotes toll-like receptor 4
T164 175-179 Protein denotes TLR4

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T539 175-179 http://www.uniprot.org/uniprot/O00206 denotes TLR4
T531 125-133 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T183 20-56 http://purl.obolibrary.org/obo/GO_0010757 denotes inhibition of plasminogen activators
T179 34-56 http://purl.obolibrary.org/obo/GO_0031639 denotes plasminogen activators

simple1

Id Subject Object Predicate Lexical cue
T215 125-133 Protein denotes SerpinB2
T216 153-173 Protein denotes toll-like receptor 4
T217 175-179 Protein denotes TLR4

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T514 118-124 Positive_regulation denotes induce
T513 134-144 Gene_expression denotes expression
T498 175-179 Protein denotes TLR4
T496 125-133 Protein denotes SerpinB2
T497 153-173 Protein denotes toll-like receptor 4
R308 T513 T514 themeOf expression,induce
R680 T496 T513 themeOf SerpinB2,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T606 125-133 Protein denotes SerpinB2
T607 153-173 Protein denotes toll-like receptor 4
T608 175-179 Protein denotes TLR4
T623 134-144 Gene_expression denotes expression
T624 118-124 Positive_regulation denotes induce
R718 T606 T623 themeOf SerpinB2,expression
R720 T607 T624 causeOf toll-like receptor 4,induce
R733 T623 T624 themeOf expression,induce

DLUT931

Id Subject Object Predicate Lexical cue
T572 125-133 Protein denotes SerpinB2
T573 153-173 Protein denotes toll-like receptor 4
T574 175-179 Protein denotes TLR4
T590 134-144 Gene_expression denotes expression
T591 118-124 Positive_regulation denotes induce
R685 T572 T590 themeOf SerpinB2,expression
R686 T573 T591 causeOf toll-like receptor 4,induce
R693 T590 T591 themeOf expression,induce

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T759 125-144 Gene_expression denotes SerpinB2 expression
T750 78-81 Entity denotes LPS
T748 125-133 Protein denotes SerpinB2
T709 58-83 Entity denotes Lipopolysaccharide (LPS),
T711 103-112 Entity denotes endotoxin
T714 149-180 Protein denotes the toll-like receptor 4 (TLR4)
T715 175-179 Protein denotes TLR4
T733 31-56 Entity denotes of plasminogen activators
T745 34-45 Protein denotes plasminogen
R348 T748 T759 themeOf SerpinB2,SerpinB2 expression

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T647 118-124 Positive_regulation denotes induce
T646 134-144 Gene_expression denotes expression
T645 125-133 Protein denotes SerpinB2
T644 20-30 Negative_regulation denotes inhibition
T641 34-56 Protein denotes plasminogen activators
R323 T641 T644 themeOf plasminogen activators,inhibition
R324 T645 T646 themeOf SerpinB2,expression
R325 T646 T647 themeOf expression,induce

testone

Id Subject Object Predicate Lexical cue
T40 134-144 Gene_expression denotes expression
T39 118-124 Positive_regulation denotes induce
T27 175-179 Protein denotes TLR4
T26 153-173 Protein denotes toll-like receptor 4
T25 125-133 Protein denotes SerpinB2
R3 T27 T26 equivalentTo TLR4,toll-like receptor 4
R8 T40 T39 themeOf expression,induce
R2 T25 T40 themeOf SerpinB2,expression

test3

Id Subject Object Predicate Lexical cue
T78 175-179 Protein denotes TLR4
T77 153-173 Protein denotes toll-like receptor 4
T76 134-144 Gene_expression denotes expression
T75 125-133 Protein denotes SerpinB2
T74 118-124 Positive_regulation denotes induce
T56 175-179 Protein denotes TLR4
T55 153-173 Protein denotes toll-like receptor 4
T54 125-133 Protein denotes SerpinB2
R17 T75 T76 themeOf SerpinB2,expression
R18 T76 T74 themeOf expression,induce
R19 T78 T77 equivalentTo TLR4,toll-like receptor 4