PMC:3589482 / 341-559
Annnotations
bionlp-st-ge-2016-spacy-parsed
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pmc-enju-pas
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bionlp-st-ge-2016-test-proteins
{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T162","span":{"begin":125,"end":133},"obj":"Protein"},{"id":"T163","span":{"begin":153,"end":173},"obj":"Protein"},{"id":"T164","span":{"begin":175,"end":179},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"phage survival, and inhibition of plasminogen activators. Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs"}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T539","span":{"begin":175,"end":179},"obj":"http://www.uniprot.org/uniprot/O00206"},{"id":"T531","span":{"begin":125,"end":133},"obj":"http://www.uniprot.org/uniprot/P05120"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"phage survival, and inhibition of plasminogen activators. Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs"}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T183","span":{"begin":20,"end":56},"obj":"http://purl.obolibrary.org/obo/GO_0010757"},{"id":"T179","span":{"begin":34,"end":56},"obj":"http://purl.obolibrary.org/obo/GO_0031639"}],"text":"phage survival, and inhibition of plasminogen activators. Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs"}
simple1
{"project":"simple1","denotations":[{"id":"T215","span":{"begin":125,"end":133},"obj":"Protein"},{"id":"T216","span":{"begin":153,"end":173},"obj":"Protein"},{"id":"T217","span":{"begin":175,"end":179},"obj":"Protein"}],"text":"phage survival, and inhibition of plasminogen activators. Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs"}
BioNLP16_DUT
{"project":"BioNLP16_DUT","denotations":[{"id":"T514","span":{"begin":118,"end":124},"obj":"Positive_regulation"},{"id":"T513","span":{"begin":134,"end":144},"obj":"Gene_expression"},{"id":"T498","span":{"begin":175,"end":179},"obj":"Protein"},{"id":"T496","span":{"begin":125,"end":133},"obj":"Protein"},{"id":"T497","span":{"begin":153,"end":173},"obj":"Protein"}],"relations":[{"id":"R308","pred":"themeOf","subj":"T513","obj":"T514"},{"id":"R680","pred":"themeOf","subj":"T496","obj":"T513"}],"text":"phage survival, and inhibition of plasminogen activators. Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs"}
BioNLP16_Messiy
{"project":"BioNLP16_Messiy","denotations":[{"id":"T606","span":{"begin":125,"end":133},"obj":"Protein"},{"id":"T607","span":{"begin":153,"end":173},"obj":"Protein"},{"id":"T608","span":{"begin":175,"end":179},"obj":"Protein"},{"id":"T623","span":{"begin":134,"end":144},"obj":"Gene_expression"},{"id":"T624","span":{"begin":118,"end":124},"obj":"Positive_regulation"}],"relations":[{"id":"R718","pred":"themeOf","subj":"T606","obj":"T623"},{"id":"R720","pred":"causeOf","subj":"T607","obj":"T624"},{"id":"R733","pred":"themeOf","subj":"T623","obj":"T624"}],"text":"phage survival, and inhibition of plasminogen activators. Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs"}
DLUT931
{"project":"DLUT931","denotations":[{"id":"T572","span":{"begin":125,"end":133},"obj":"Protein"},{"id":"T573","span":{"begin":153,"end":173},"obj":"Protein"},{"id":"T574","span":{"begin":175,"end":179},"obj":"Protein"},{"id":"T590","span":{"begin":134,"end":144},"obj":"Gene_expression"},{"id":"T591","span":{"begin":118,"end":124},"obj":"Positive_regulation"}],"relations":[{"id":"R685","pred":"themeOf","subj":"T572","obj":"T590"},{"id":"R686","pred":"causeOf","subj":"T573","obj":"T591"},{"id":"R693","pred":"themeOf","subj":"T590","obj":"T591"}],"text":"phage survival, and inhibition of plasminogen activators. Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs"}
bionlp-st-ge-2016-test-ihmc
{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T759","span":{"begin":125,"end":144},"obj":"Gene_expression"},{"id":"T750","span":{"begin":78,"end":81},"obj":"Entity"},{"id":"T748","span":{"begin":125,"end":133},"obj":"Protein"},{"id":"T709","span":{"begin":58,"end":83},"obj":"Entity"},{"id":"T711","span":{"begin":103,"end":112},"obj":"Entity"},{"id":"T714","span":{"begin":149,"end":180},"obj":"Protein"},{"id":"T715","span":{"begin":175,"end":179},"obj":"Protein"},{"id":"T733","span":{"begin":31,"end":56},"obj":"Entity"},{"id":"T745","span":{"begin":34,"end":45},"obj":"Protein"}],"relations":[{"id":"R348","pred":"themeOf","subj":"T748","obj":"T759"}],"text":"phage survival, and inhibition of plasminogen activators. Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs"}
bionlp-st-ge-2016-test-tees
{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T647","span":{"begin":118,"end":124},"obj":"Positive_regulation"},{"id":"T646","span":{"begin":134,"end":144},"obj":"Gene_expression"},{"id":"T645","span":{"begin":125,"end":133},"obj":"Protein"},{"id":"T644","span":{"begin":20,"end":30},"obj":"Negative_regulation"},{"id":"T641","span":{"begin":34,"end":56},"obj":"Protein"}],"relations":[{"id":"R323","pred":"themeOf","subj":"T641","obj":"T644"},{"id":"R324","pred":"themeOf","subj":"T645","obj":"T646"},{"id":"R325","pred":"themeOf","subj":"T646","obj":"T647"}],"text":"phage survival, and inhibition of plasminogen activators. Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs"}
testone
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test3
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