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PMC:3589482 / 33474-33760 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T15398 153-161 JJ denotes enriched
T15397 149-152 DT denotes the
T15396 145-148 CC denotes and
T15395 143-144 , denotes ,
T15394 135-143 NNS denotes proteins
T15393 127-134 JJ denotes binding
T15392 123-126 NNP denotes DNA
T15391 115-122 IN denotes against
T15390 104-114 NNS denotes antibodies
T15389 99-103 IN denotes with
T15388 80-98 VBN denotes immunoprecipitated
T15387 76-79 VBD denotes was
T15386 66-75 NN denotes chromatin
T15385 58-65 JJ denotes soluble
T15384 56-57 , denotes ,
T15383 53-56 NNS denotes hrs
T15382 51-52 CD denotes 8
T15381 48-50 TO denotes to
T15380 45-47 RB denotes up
T15379 41-44 IN denotes for
T15378 37-40 NNP denotes LPS
T15377 32-36 IN denotes with
T15376 21-31 VBN denotes stimulated
T15375 16-20 VBD denotes were
T15374 10-15 NNS denotes cells
T15373 4-9 CD denotes 264.7
T15372 0-3 NNP denotes RAW
T15418 285-286 . denotes .
T15417 284-285 -RRB- denotes )
T15416 282-284 NN denotes 4A
T15415 277-281 JJ denotes fig.
T15414 274-276 IN denotes in
T15413 262-273 VBN denotes illustrated
T15412 261-262 -LRB- denotes (
T15411 253-260 NNS denotes primers
T15410 244-252 JJ denotes specific
T15409 235-243 NN denotes promoter
T15408 226-234 JJ denotes proximal
T15407 217-225 CD denotes SerpinB2
T15406 211-216 VBG denotes using
T15405 206-210 JJ denotes qPCR
T15404 202-205 CC denotes and
T15403 184-201 JJ denotes semi-quantitative
T15402 179-183 DT denotes both
T15401 176-178 IN denotes by
T15400 166-175 VBN denotes amplified
T15399 162-165 NN denotes DNA
R11320 T15372 T15376 nsubjpass RAW,stimulated
R11321 T15373 T15374 nummod 264.7,cells
R11322 T15374 T15376 nsubjpass cells,stimulated
R11323 T15375 T15376 auxpass were,stimulated
R11324 T15376 T15376 ROOT stimulated,stimulated
R11325 T15377 T15376 prep with,stimulated
R11326 T15378 T15377 pobj LPS,with
R11327 T15379 T15376 prep for,stimulated
R11328 T15380 T15382 quantmod up,8
R11329 T15381 T15382 quantmod to,8
R11330 T15382 T15383 nummod 8,hrs
R11331 T15383 T15379 pobj hrs,for
R11332 T15384 T15387 punct ",",was
R11333 T15385 T15386 amod soluble,chromatin
R11334 T15386 T15387 nsubj chromatin,was
R11335 T15387 T15388 auxpass was,immunoprecipitated
R11336 T15388 T15376 conj immunoprecipitated,stimulated
R11337 T15389 T15388 prep with,immunoprecipitated
R11338 T15390 T15389 pobj antibodies,with
R11339 T15391 T15390 prep against,antibodies
R11340 T15392 T15394 amod DNA,proteins
R11341 T15393 T15394 amod binding,proteins
R11342 T15394 T15391 pobj proteins,against
R11343 T15395 T15388 punct ",",immunoprecipitated
R11344 T15396 T15388 cc and,immunoprecipitated
R11345 T15397 T15399 det the,DNA
R11346 T15398 T15399 amod enriched,DNA
R11347 T15399 T15406 nsubj DNA,using
R11348 T15400 T15399 acl amplified,DNA
R11349 T15401 T15400 agent by,amplified
R11350 T15402 T15403 preconj both,semi-quantitative
R11351 T15403 T15406 amod semi-quantitative,using
R11352 T15404 T15403 cc and,semi-quantitative
R11353 T15405 T15403 conj qPCR,semi-quantitative
R11354 T15406 T15388 conj using,immunoprecipitated
R11355 T15407 T15411 nummod SerpinB2,primers
R11356 T15408 T15409 amod proximal,promoter
R11357 T15409 T15411 nmod promoter,primers
R11358 T15410 T15411 amod specific,primers
R11359 T15411 T15406 dobj primers,using
R11360 T15412 T15411 punct (,primers
R11361 T15413 T15411 acl illustrated,primers
R11362 T15414 T15413 prep in,illustrated
R11363 T15415 T15416 amod fig.,4A
R11364 T15416 T15414 pobj 4A,in
R11365 T15417 T15411 punct ),primers
R11366 T15418 T15376 punct .,stimulated

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T14951 284-285 -RRB- denotes )
T14950 282-284 NN denotes 4A
T14949 277-280 NN denotes fig
T14948 274-276 IN denotes in
T14947 262-273 VB denotes illustrated
T14946 261-262 -LRB- denotes (
T14945 253-260 NN denotes primers
T14944 244-252 JJ denotes specific
T14943 235-243 NN denotes promoter
T14942 226-234 JJ denotes proximal
T14941 217-225 NN denotes SerpinB2
T14940 211-216 VB denotes using
T14939 206-210 NN denotes qPCR
T14938 202-205 CC denotes and
T14937 184-201 JJ denotes semi-quantitative
T14936 179-183 CC denotes both
T14935 176-178 IN denotes by
T14934 166-175 VB denotes amplified
T14933 162-165 NN denotes DNA
T14932 153-161 VB denotes enriched
T14931 149-152 DT denotes the
T14930 145-148 CC denotes and
T14929 143-144 -COMMA- denotes ,
T14928 135-143 NN denotes proteins
T14927 127-134 NN denotes binding
T14926 123-126 NN denotes DNA
T14925 115-122 IN denotes against
T14924 104-114 NN denotes antibodies
T14923 99-103 IN denotes with
T14922 80-98 VB denotes immunoprecipitated
T14921 76-79 VB denotes was
T14920 66-75 NN denotes chromatin
T14919 58-65 JJ denotes soluble
T14918 56-57 -COMMA- denotes ,
T14917 53-56 NN denotes hrs
T14916 51-52 CD denotes 8
T14915 48-50 TO denotes to
T14914 45-47 RB denotes up
T14913 41-44 IN denotes for
T14912 37-40 NN denotes LPS
T14911 32-36 IN denotes with
T14910 21-31 VB denotes stimulated
T14909 16-20 VB denotes were
T14908 10-15 NN denotes cells
T14907 4-9 CD denotes 264.7
T14906 0-3 NN denotes RAW
R10939 T14908 T14906 arg1Of cells,RAW
R10940 T14908 T14907 arg1Of cells,264.7
R10941 T14908 T14909 arg1Of cells,were
R10942 T14908 T14910 arg2Of cells,stimulated
R10943 T14910 T14909 arg2Of stimulated,were
R10944 T14910 T14911 arg1Of stimulated,with
R10945 T14910 T14913 arg1Of stimulated,for
R10946 T14910 T14918 arg1Of stimulated,","
R10947 T14912 T14911 arg2Of LPS,with
R10948 T14916 T14914 arg1Of 8,up
R10949 T14916 T14915 arg1Of 8,to
R10950 T14917 T14913 arg2Of hrs,for
R10951 T14917 T14916 arg1Of hrs,8
R10952 T14918 T14930 arg1Of ",",and
R10953 T14920 T14919 arg1Of chromatin,soluble
R10954 T14920 T14921 arg1Of chromatin,was
R10955 T14920 T14922 arg2Of chromatin,immunoprecipitated
R10956 T14922 T14918 arg2Of immunoprecipitated,","
R10957 T14922 T14921 arg2Of immunoprecipitated,was
R10958 T14922 T14923 arg1Of immunoprecipitated,with
R10959 T14922 T14925 arg1Of immunoprecipitated,against
R10960 T14924 T14923 arg2Of antibodies,with
R10961 T14928 T14925 arg2Of proteins,against
R10962 T14928 T14926 arg1Of proteins,DNA
R10963 T14928 T14927 arg1Of proteins,binding
R10964 T14930 T14929 arg1Of and,","
R10965 T14933 T14931 arg1Of DNA,the
R10966 T14933 T14932 arg2Of DNA,enriched
R10967 T14933 T14934 arg2Of DNA,amplified
R10968 T14933 T14946 arg1Of DNA,(
R10969 T14933 T14947 arg2Of DNA,illustrated
R10970 T14939 T14934 arg1Of qPCR,amplified
R10971 T14939 T14935 arg2Of qPCR,by
R10972 T14939 T14936 arg1Of qPCR,both
R10973 T14939 T14937 arg1Of qPCR,semi-quantitative
R10974 T14939 T14938 arg1Of qPCR,and
R10975 T14939 T14940 arg1Of qPCR,using
R10976 T14945 T14940 arg2Of primers,using
R10977 T14945 T14941 arg1Of primers,SerpinB2
R10978 T14945 T14942 arg1Of primers,proximal
R10979 T14945 T14943 arg1Of primers,promoter
R10980 T14945 T14944 arg1Of primers,specific
R10981 T14947 T14930 arg2Of illustrated,and
R10982 T14947 T14948 arg1Of illustrated,in
R10983 T14949 T14948 arg2Of fig,in
R10984 T14950 T14951 arg1Of 4A,)

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T15187 217-225 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T14852 162-175 http://purl.obolibrary.org/obo/GO_0006277 denotes DNA amplified

GO-MF

Id Subject Object Predicate Lexical cue
T14859 127-143 http://purl.obolibrary.org/obo/GO_0005515 denotes binding proteins
T14857 127-134 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T14856 123-134 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA binding
T14855 104-114 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies

GO-CC

Id Subject Object Predicate Lexical cue
T14866 104-114 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T14865 104-114 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T14862 10-15 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T14861 66-75 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin

sentences

Id Subject Object Predicate Lexical cue
T14842 282-286 Sentence denotes 4A).
T14841 0-281 Sentence denotes RAW 264.7 cells were stimulated with LPS for up to 8 hrs, soluble chromatin was immunoprecipitated with antibodies against DNA binding proteins, and the enriched DNA amplified by both semi-quantitative and qPCR using SerpinB2 proximal promoter specific primers (illustrated in fig.
T207 0-286 Sentence denotes RAW 264.7 cells were stimulated with LPS for up to 8 hrs, soluble chromatin was immunoprecipitated with antibodies against DNA binding proteins, and the enriched DNA amplified by both semi-quantitative and qPCR using SerpinB2 proximal promoter specific primers (illustrated in fig. 4A).

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T15142 217-225 Protein denotes SerpinB2

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T15238 217-225 Protein denotes SerpinB2

DLUT931

Id Subject Object Predicate Lexical cue
T15201 217-225 Protein denotes SerpinB2

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T15295 58-75 Entity denotes soluble chromatin
T15289 99-114 Entity denotes with antibodies
T15286 226-252 Entity denotes proximal promoter specific
T15282 37-40 Entity denotes LPS
T15281 149-165 Entity denotes the enriched DNA
T15274 217-225 Protein denotes SerpinB2
T15273 45-56 Protein denotes up to 8 hrs
T15272 206-210 Protein denotes qPCR
T15269 123-144 Protein denotes DNA binding proteins,