PMC:3589482 / 33474-33760
Annnotations
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T15398","span":{"begin":153,"end":161},"obj":"JJ"},{"id":"T15397","span":{"begin":149,"end":152},"obj":"DT"},{"id":"T15396","span":{"begin":145,"end":148},"obj":"CC"},{"id":"T15395","span":{"begin":143,"end":144},"obj":","},{"id":"T15394","span":{"begin":135,"end":143},"obj":"NNS"},{"id":"T15393","span":{"begin":127,"end":134},"obj":"JJ"},{"id":"T15392","span":{"begin":123,"end":126},"obj":"NNP"},{"id":"T15391","span":{"begin":115,"end":122},"obj":"IN"},{"id":"T15390","span":{"begin":104,"end":114},"obj":"NNS"},{"id":"T15389","span":{"begin":99,"end":103},"obj":"IN"},{"id":"T15388","span":{"begin":80,"end":98},"obj":"VBN"},{"id":"T15387","span":{"begin":76,"end":79},"obj":"VBD"},{"id":"T15386","span":{"begin":66,"end":75},"obj":"NN"},{"id":"T15385","span":{"begin":58,"end":65},"obj":"JJ"},{"id":"T15384","span":{"begin":56,"end":57},"obj":","},{"id":"T15383","span":{"begin":53,"end":56},"obj":"NNS"},{"id":"T15382","span":{"begin":51,"end":52},"obj":"CD"},{"id":"T15381","span":{"begin":48,"end":50},"obj":"TO"},{"id":"T15380","span":{"begin":45,"end":47},"obj":"RB"},{"id":"T15379","span":{"begin":41,"end":44},"obj":"IN"},{"id":"T15378","span":{"begin":37,"end":40},"obj":"NNP"},{"id":"T15377","span":{"begin":32,"end":36},"obj":"IN"},{"id":"T15376","span":{"begin":21,"end":31},"obj":"VBN"},{"id":"T15375","span":{"begin":16,"end":20},"obj":"VBD"},{"id":"T15374","span":{"begin":10,"end":15},"obj":"NNS"},{"id":"T15373","span":{"begin":4,"end":9},"obj":"CD"},{"id":"T15372","span":{"begin":0,"end":3},"obj":"NNP"},{"id":"T15418","span":{"begin":285,"end":286},"obj":"."},{"id":"T15417","span":{"begin":284,"end":285},"obj":"-RRB-"},{"id":"T15416","span":{"begin":282,"end":284},"obj":"NN"},{"id":"T15415","span":{"begin":277,"end":281},"obj":"JJ"},{"id":"T15414","span":{"begin":274,"end":276},"obj":"IN"},{"id":"T15413","span":{"begin":262,"end":273},"obj":"VBN"},{"id":"T15412","span":{"begin":261,"end":262},"obj":"-LRB-"},{"id":"T15411","span":{"begin":253,"end":260},"obj":"NNS"},{"id":"T15410","span":{"begin":244,"end":252},"obj":"JJ"},{"id":"T15409","span":{"begin":235,"end":243},"obj":"NN"},{"id":"T15408","span":{"begin":226,"end":234},"obj":"JJ"},{"id":"T15407","span":{"begin":217,"end":225},"obj":"CD"},{"id":"T15406","span":{"begin":211,"end":216},"obj":"VBG"},{"id":"T15405","span":{"begin":206,"end":210},"obj":"JJ"},{"id":"T15404","span":{"begin":202,"end":205},"obj":"CC"},{"id":"T15403","span":{"begin":184,"end":201},"obj":"JJ"},{"id":"T15402","span":{"begin":179,"end":183},"obj":"DT"},{"id":"T15401","span":{"begin":176,"end":178},"obj":"IN"},{"id":"T15400","span":{"begin":166,"end":175},"obj":"VBN"},{"id":"T15399","span":{"begin":162,"end":165},"obj":"NN"}],"relations":[{"id":"R11320","pred":"nsubjpass","subj":"T15372","obj":"T15376"},{"id":"R11321","pred":"nummod","subj":"T15373","obj":"T15374"},{"id":"R11322","pred":"nsubjpass","subj":"T15374","obj":"T15376"},{"id":"R11323","pred":"auxpass","subj":"T15375","obj":"T15376"},{"id":"R11324","pred":"ROOT","subj":"T15376","obj":"T15376"},{"id":"R11325","pred":"prep","subj":"T15377","obj":"T15376"},{"id":"R11326","pred":"pobj","subj":"T15378","obj":"T15377"},{"id":"R11327","pred":"prep","subj":"T15379","obj":"T15376"},{"id":"R11328","pred":"quantmod","subj":"T15380","obj":"T15382"},{"id":"R11329","pred":"quantmod","subj":"T15381","obj":"T15382"},{"id":"R11330","pred":"nummod","subj":"T15382","obj":"T15383"},{"id":"R11331","pred":"pobj","subj":"T15383","obj":"T15379"},{"id":"R11332","pred":"punct","subj":"T15384","obj":"T15387"},{"id":"R11333","pred":"amod","subj":"T15385","obj":"T15386"},{"id":"R11334","pred":"nsubj","subj":"T15386","obj":"T15387"},{"id":"R11335","pred":"auxpass","subj":"T15387","obj":"T15388"},{"id":"R11336","pred":"conj","subj":"T15388","obj":"T15376"},{"id":"R11337","pred":"prep","subj":"T15389","obj":"T15388"},{"id":"R11338","pred":"pobj","subj":"T15390","obj":"T15389"},{"id":"R11339","pred":"prep","subj":"T15391","obj":"T15390"},{"id":"R11340","pred":"amod","subj":"T15392","obj":"T15394"},{"id":"R11341","pred":"amod","subj":"T15393","obj":"T15394"},{"id":"R11342","pred":"pobj","subj":"T15394","obj":"T15391"},{"id":"R11343","pred":"punct","subj":"T15395","obj":"T15388"},{"id":"R11344","pred":"cc","subj":"T15396","obj":"T15388"},{"id":"R11345","pred":"det","subj":"T15397","obj":"T15399"},{"id":"R11346","pred":"amod","subj":"T15398","obj":"T15399"},{"id":"R11347","pred":"nsubj","subj":"T15399","obj":"T15406"},{"id":"R11348","pred":"acl","subj":"T15400","obj":"T15399"},{"id":"R11349","pred":"agent","subj":"T15401","obj":"T15400"},{"id":"R11350","pred":"preconj","subj":"T15402","obj":"T15403"},{"id":"R11351","pred":"amod","subj":"T15403","obj":"T15406"},{"id":"R11352","pred":"cc","subj":"T15404","obj":"T15403"},{"id":"R11353","pred":"conj","subj":"T15405","obj":"T15403"},{"id":"R11354","pred":"conj","subj":"T15406","obj":"T15388"},{"id":"R11355","pred":"nummod","subj":"T15407","obj":"T15411"},{"id":"R11356","pred":"amod","subj":"T15408","obj":"T15409"},{"id":"R11357","pred":"nmod","subj":"T15409","obj":"T15411"},{"id":"R11358","pred":"amod","subj":"T15410","obj":"T15411"},{"id":"R11359","pred":"dobj","subj":"T15411","obj":"T15406"},{"id":"R11360","pred":"punct","subj":"T15412","obj":"T15411"},{"id":"R11361","pred":"acl","subj":"T15413","obj":"T15411"},{"id":"R11362","pred":"prep","subj":"T15414","obj":"T15413"},{"id":"R11363","pred":"amod","subj":"T15415","obj":"T15416"},{"id":"R11364","pred":"pobj","subj":"T15416","obj":"T15414"},{"id":"R11365","pred":"punct","subj":"T15417","obj":"T15411"},{"id":"R11366","pred":"punct","subj":"T15418","obj":"T15376"}],"text":"RAW 264.7 cells were stimulated with LPS for up to 8 hrs, soluble chromatin was immunoprecipitated with antibodies against DNA binding proteins, and the enriched DNA amplified by both semi-quantitative and qPCR using SerpinB2 proximal promoter specific primers (illustrated in fig. 4A)."}
pmc-enju-pas
{"project":"pmc-enju-pas","denotations":[{"id":"T14951","span":{"begin":284,"end":285},"obj":"-RRB-"},{"id":"T14950","span":{"begin":282,"end":284},"obj":"NN"},{"id":"T14949","span":{"begin":277,"end":280},"obj":"NN"},{"id":"T14948","span":{"begin":274,"end":276},"obj":"IN"},{"id":"T14947","span":{"begin":262,"end":273},"obj":"VB"},{"id":"T14946","span":{"begin":261,"end":262},"obj":"-LRB-"},{"id":"T14945","span":{"begin":253,"end":260},"obj":"NN"},{"id":"T14944","span":{"begin":244,"end":252},"obj":"JJ"},{"id":"T14943","span":{"begin":235,"end":243},"obj":"NN"},{"id":"T14942","span":{"begin":226,"end":234},"obj":"JJ"},{"id":"T14941","span":{"begin":217,"end":225},"obj":"NN"},{"id":"T14940","span":{"begin":211,"end":216},"obj":"VB"},{"id":"T14939","span":{"begin":206,"end":210},"obj":"NN"},{"id":"T14938","span":{"begin":202,"end":205},"obj":"CC"},{"id":"T14937","span":{"begin":184,"end":201},"obj":"JJ"},{"id":"T14936","span":{"begin":179,"end":183},"obj":"CC"},{"id":"T14935","span":{"begin":176,"end":178},"obj":"IN"},{"id":"T14934","span":{"begin":166,"end":175},"obj":"VB"},{"id":"T14933","span":{"begin":162,"end":165},"obj":"NN"},{"id":"T14932","span":{"begin":153,"end":161},"obj":"VB"},{"id":"T14931","span":{"begin":149,"end":152},"obj":"DT"},{"id":"T14930","span":{"begin":145,"end":148},"obj":"CC"},{"id":"T14929","span":{"begin":143,"end":144},"obj":"-COMMA-"},{"id":"T14928","span":{"begin":135,"end":143},"obj":"NN"},{"id":"T14927","span":{"begin":127,"end":134},"obj":"NN"},{"id":"T14926","span":{"begin":123,"end":126},"obj":"NN"},{"id":"T14925","span":{"begin":115,"end":122},"obj":"IN"},{"id":"T14924","span":{"begin":104,"end":114},"obj":"NN"},{"id":"T14923","span":{"begin":99,"end":103},"obj":"IN"},{"id":"T14922","span":{"begin":80,"end":98},"obj":"VB"},{"id":"T14921","span":{"begin":76,"end":79},"obj":"VB"},{"id":"T14920","span":{"begin":66,"end":75},"obj":"NN"},{"id":"T14919","span":{"begin":58,"end":65},"obj":"JJ"},{"id":"T14918","span":{"begin":56,"end":57},"obj":"-COMMA-"},{"id":"T14917","span":{"begin":53,"end":56},"obj":"NN"},{"id":"T14916","span":{"begin":51,"end":52},"obj":"CD"},{"id":"T14915","span":{"begin":48,"end":50},"obj":"TO"},{"id":"T14914","span":{"begin":45,"end":47},"obj":"RB"},{"id":"T14913","span":{"begin":41,"end":44},"obj":"IN"},{"id":"T14912","span":{"begin":37,"end":40},"obj":"NN"},{"id":"T14911","span":{"begin":32,"end":36},"obj":"IN"},{"id":"T14910","span":{"begin":21,"end":31},"obj":"VB"},{"id":"T14909","span":{"begin":16,"end":20},"obj":"VB"},{"id":"T14908","span":{"begin":10,"end":15},"obj":"NN"},{"id":"T14907","span":{"begin":4,"end":9},"obj":"CD"},{"id":"T14906","span":{"begin":0,"end":3},"obj":"NN"}],"relations":[{"id":"R10939","pred":"arg1Of","subj":"T14908","obj":"T14906"},{"id":"R10940","pred":"arg1Of","subj":"T14908","obj":"T14907"},{"id":"R10941","pred":"arg1Of","subj":"T14908","obj":"T14909"},{"id":"R10942","pred":"arg2Of","subj":"T14908","obj":"T14910"},{"id":"R10943","pred":"arg2Of","subj":"T14910","obj":"T14909"},{"id":"R10944","pred":"arg1Of","subj":"T14910","obj":"T14911"},{"id":"R10945","pred":"arg1Of","subj":"T14910","obj":"T14913"},{"id":"R10946","pred":"arg1Of","subj":"T14910","obj":"T14918"},{"id":"R10947","pred":"arg2Of","subj":"T14912","obj":"T14911"},{"id":"R10948","pred":"arg1Of","subj":"T14916","obj":"T14914"},{"id":"R10949","pred":"arg1Of","subj":"T14916","obj":"T14915"},{"id":"R10950","pred":"arg2Of","subj":"T14917","obj":"T14913"},{"id":"R10951","pred":"arg1Of","subj":"T14917","obj":"T14916"},{"id":"R10952","pred":"arg1Of","subj":"T14918","obj":"T14930"},{"id":"R10953","pred":"arg1Of","subj":"T14920","obj":"T14919"},{"id":"R10954","pred":"arg1Of","subj":"T14920","obj":"T14921"},{"id":"R10955","pred":"arg2Of","subj":"T14920","obj":"T14922"},{"id":"R10956","pred":"arg2Of","subj":"T14922","obj":"T14918"},{"id":"R10957","pred":"arg2Of","subj":"T14922","obj":"T14921"},{"id":"R10958","pred":"arg1Of","subj":"T14922","obj":"T14923"},{"id":"R10959","pred":"arg1Of","subj":"T14922","obj":"T14925"},{"id":"R10960","pred":"arg2Of","subj":"T14924","obj":"T14923"},{"id":"R10961","pred":"arg2Of","subj":"T14928","obj":"T14925"},{"id":"R10962","pred":"arg1Of","subj":"T14928","obj":"T14926"},{"id":"R10963","pred":"arg1Of","subj":"T14928","obj":"T14927"},{"id":"R10964","pred":"arg1Of","subj":"T14930","obj":"T14929"},{"id":"R10965","pred":"arg1Of","subj":"T14933","obj":"T14931"},{"id":"R10966","pred":"arg2Of","subj":"T14933","obj":"T14932"},{"id":"R10967","pred":"arg2Of","subj":"T14933","obj":"T14934"},{"id":"R10968","pred":"arg1Of","subj":"T14933","obj":"T14946"},{"id":"R10969","pred":"arg2Of","subj":"T14933","obj":"T14947"},{"id":"R10970","pred":"arg1Of","subj":"T14939","obj":"T14934"},{"id":"R10971","pred":"arg2Of","subj":"T14939","obj":"T14935"},{"id":"R10972","pred":"arg1Of","subj":"T14939","obj":"T14936"},{"id":"R10973","pred":"arg1Of","subj":"T14939","obj":"T14937"},{"id":"R10974","pred":"arg1Of","subj":"T14939","obj":"T14938"},{"id":"R10975","pred":"arg1Of","subj":"T14939","obj":"T14940"},{"id":"R10976","pred":"arg2Of","subj":"T14945","obj":"T14940"},{"id":"R10977","pred":"arg1Of","subj":"T14945","obj":"T14941"},{"id":"R10978","pred":"arg1Of","subj":"T14945","obj":"T14942"},{"id":"R10979","pred":"arg1Of","subj":"T14945","obj":"T14943"},{"id":"R10980","pred":"arg1Of","subj":"T14945","obj":"T14944"},{"id":"R10981","pred":"arg2Of","subj":"T14947","obj":"T14930"},{"id":"R10982","pred":"arg1Of","subj":"T14947","obj":"T14948"},{"id":"R10983","pred":"arg2Of","subj":"T14949","obj":"T14948"},{"id":"R10984","pred":"arg1Of","subj":"T14950","obj":"T14951"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"RAW 264.7 cells were stimulated with LPS for up to 8 hrs, soluble chromatin was immunoprecipitated with antibodies against DNA binding proteins, and the enriched DNA amplified by both semi-quantitative and qPCR using SerpinB2 proximal promoter specific primers (illustrated in fig. 4A)."}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T15187","span":{"begin":217,"end":225},"obj":"http://www.uniprot.org/uniprot/P05120"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"RAW 264.7 cells were stimulated with LPS for up to 8 hrs, soluble chromatin was immunoprecipitated with antibodies against DNA binding proteins, and the enriched DNA amplified by both semi-quantitative and qPCR using SerpinB2 proximal promoter specific primers (illustrated in fig. 4A)."}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T14852","span":{"begin":162,"end":175},"obj":"http://purl.obolibrary.org/obo/GO_0006277"}],"text":"RAW 264.7 cells were stimulated with LPS for up to 8 hrs, soluble chromatin was immunoprecipitated with antibodies against DNA binding proteins, and the enriched DNA amplified by both semi-quantitative and qPCR using SerpinB2 proximal promoter specific primers (illustrated in fig. 4A)."}
GO-MF
{"project":"GO-MF","denotations":[{"id":"T14859","span":{"begin":127,"end":143},"obj":"http://purl.obolibrary.org/obo/GO_0005515"},{"id":"T14857","span":{"begin":127,"end":134},"obj":"http://purl.obolibrary.org/obo/GO_0005488"},{"id":"T14856","span":{"begin":123,"end":134},"obj":"http://purl.obolibrary.org/obo/GO_0003677"},{"id":"T14855","span":{"begin":104,"end":114},"obj":"http://purl.obolibrary.org/obo/GO_0003823"}],"text":"RAW 264.7 cells were stimulated with LPS for up to 8 hrs, soluble chromatin was immunoprecipitated with antibodies against DNA binding proteins, and the enriched DNA amplified by both semi-quantitative and qPCR using SerpinB2 proximal promoter specific primers (illustrated in fig. 4A)."}
GO-CC
{"project":"GO-CC","denotations":[{"id":"T14866","span":{"begin":104,"end":114},"obj":"http://purl.obolibrary.org/obo/GO_0042571"},{"id":"T14865","span":{"begin":104,"end":114},"obj":"http://purl.obolibrary.org/obo/GO_0019815"},{"id":"T14862","span":{"begin":10,"end":15},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T14861","span":{"begin":66,"end":75},"obj":"http://purl.obolibrary.org/obo/GO_0000785"}],"text":"RAW 264.7 cells were stimulated with LPS for up to 8 hrs, soluble chromatin was immunoprecipitated with antibodies against DNA binding proteins, and the enriched DNA amplified by both semi-quantitative and qPCR using SerpinB2 proximal promoter specific primers (illustrated in fig. 4A)."}
sentences
{"project":"sentences","denotations":[{"id":"T14842","span":{"begin":282,"end":286},"obj":"Sentence"},{"id":"T14841","span":{"begin":0,"end":281},"obj":"Sentence"},{"id":"T207","span":{"begin":0,"end":286},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"RAW 264.7 cells were stimulated with LPS for up to 8 hrs, soluble chromatin was immunoprecipitated with antibodies against DNA binding proteins, and the enriched DNA amplified by both semi-quantitative and qPCR using SerpinB2 proximal promoter specific primers (illustrated in fig. 4A)."}
BioNLP16_DUT
{"project":"BioNLP16_DUT","denotations":[{"id":"T15142","span":{"begin":217,"end":225},"obj":"Protein"}],"text":"RAW 264.7 cells were stimulated with LPS for up to 8 hrs, soluble chromatin was immunoprecipitated with antibodies against DNA binding proteins, and the enriched DNA amplified by both semi-quantitative and qPCR using SerpinB2 proximal promoter specific primers (illustrated in fig. 4A)."}
BioNLP16_Messiy
{"project":"BioNLP16_Messiy","denotations":[{"id":"T15238","span":{"begin":217,"end":225},"obj":"Protein"}],"text":"RAW 264.7 cells were stimulated with LPS for up to 8 hrs, soluble chromatin was immunoprecipitated with antibodies against DNA binding proteins, and the enriched DNA amplified by both semi-quantitative and qPCR using SerpinB2 proximal promoter specific primers (illustrated in fig. 4A)."}
DLUT931
{"project":"DLUT931","denotations":[{"id":"T15201","span":{"begin":217,"end":225},"obj":"Protein"}],"text":"RAW 264.7 cells were stimulated with LPS for up to 8 hrs, soluble chromatin was immunoprecipitated with antibodies against DNA binding proteins, and the enriched DNA amplified by both semi-quantitative and qPCR using SerpinB2 proximal promoter specific primers (illustrated in fig. 4A)."}
bionlp-st-ge-2016-test-ihmc
{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T15295","span":{"begin":58,"end":75},"obj":"Entity"},{"id":"T15289","span":{"begin":99,"end":114},"obj":"Entity"},{"id":"T15286","span":{"begin":226,"end":252},"obj":"Entity"},{"id":"T15282","span":{"begin":37,"end":40},"obj":"Entity"},{"id":"T15281","span":{"begin":149,"end":165},"obj":"Entity"},{"id":"T15274","span":{"begin":217,"end":225},"obj":"Protein"},{"id":"T15273","span":{"begin":45,"end":56},"obj":"Protein"},{"id":"T15272","span":{"begin":206,"end":210},"obj":"Protein"},{"id":"T15269","span":{"begin":123,"end":144},"obj":"Protein"}],"text":"RAW 264.7 cells were stimulated with LPS for up to 8 hrs, soluble chromatin was immunoprecipitated with antibodies against DNA binding proteins, and the enriched DNA amplified by both semi-quantitative and qPCR using SerpinB2 proximal promoter specific primers (illustrated in fig. 4A)."}