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PMC:3589482 / 32011-32134 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T25049 122-123 . denotes .
T25048 112-122 NN denotes expression
T25047 107-111 NNP denotes mRNA
T25046 98-106 NNP denotes SerpinB2
T25045 86-97 JJ denotes LPS-induced
T25044 82-85 CC denotes and
T25043 69-81 JJ denotes constitutive
T25042 65-68 IN denotes for
T25041 55-64 JJ denotes essential
T25040 52-54 VBZ denotes is
T25039 50-51 NN denotes β
T25038 49-50 : denotes -
T25037 44-49 SYM denotes C/EBP
R17904 T25037 T25040 dep C/EBP,is
R17905 T25038 T25040 punct -,is
R17906 T25039 T25040 nsubj β,is
R17907 T25040 T25040 ROOT is,is
R17908 T25041 T25040 acomp essential,is
R17909 T25042 T25041 prep for,essential
R17910 T25043 T25048 amod constitutive,expression
R17911 T25044 T25043 cc and,constitutive
R17912 T25045 T25043 conj LPS-induced,constitutive
R17913 T25046 T25047 compound SerpinB2,mRNA
R17914 T25047 T25048 compound mRNA,expression
R17915 T25048 T25042 pobj expression,for
R17916 T25049 T25040 punct .,is

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T24639 112-122 NN denotes expression
T24638 107-111 NN denotes mRNA
T24637 98-106 NN denotes SerpinB2
T24636 86-97 JJ denotes LPS-induced
T24635 82-85 CC denotes and
T24634 69-81 JJ denotes constitutive
T24633 65-68 IN denotes for
T24632 55-64 JJ denotes essential
T24631 52-54 VB denotes is
T24630 44-51 NN denotes C/EBP-β
R17623 T24630 T24631 arg1Of C/EBP-β,is
R17624 T24630 T24632 arg1Of C/EBP-β,essential
R17625 T24632 T24631 arg2Of essential,is
R17626 T24632 T24633 arg1Of essential,for
R17627 T24634 T24635 arg1Of constitutive,and
R17628 T24636 T24635 arg2Of LPS-induced,and
R17629 T24639 T24633 arg2Of expression,for
R17630 T24639 T24634 arg1Of expression,constitutive
R17631 T24639 T24636 arg1Of expression,LPS-induced
R17632 T24639 T24637 arg1Of expression,SerpinB2
R17633 T24639 T24638 arg1Of expression,mRNA

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T24605 98-106 Protein denotes SerpinB2
T24604 44-51 Protein denotes C/EBP-β

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T24853 44-51 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T24861 98-106 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

sentences

Id Subject Object Predicate Lexical cue
T24569 44-123 Sentence denotes C/EBP-β is essential for constitutive and LPS-induced SerpinB2 mRNA expression.
T196 0-123 Sentence denotes 10.1371/journal.pone.0057855.g006 Figure 6 C/EBP-β is essential for constitutive and LPS-induced SerpinB2 mRNA expression.

simple1

Id Subject Object Predicate Lexical cue
T24618 98-106 Protein denotes SerpinB2
T24617 44-51 Protein denotes C/EBP-β

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T24843 55-64 Positive_regulation denotes essential
T24842 86-97 Positive_regulation denotes LPS-induced
T24841 112-122 Transcription denotes expression
T24829 98-106 Protein denotes SerpinB2
T24828 44-51 Protein denotes C/EBP-β
R17808 T24828 T24843 causeOf C/EBP-β,essential
R17809 T24829 T24842 themeOf SerpinB2,LPS-induced
R17810 T24829 T24841 themeOf SerpinB2,expression
R17821 T24841 T24843 themeOf expression,essential
R17822 T24841 T24842 themeOf expression,LPS-induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T24922 112-122 Transcription denotes expression
T24910 98-106 Protein denotes SerpinB2
T24909 44-51 Protein denotes C/EBP-β
T24924 86-97 Positive_regulation denotes LPS-induced
T24923 55-64 Positive_regulation denotes essential
R17844 T24910 T24922 themeOf SerpinB2,expression
R17857 T24922 T24923 themeOf expression,essential
R17858 T24922 T24924 themeOf expression,LPS-induced
R17843 T24909 T24923 causeOf C/EBP-β,essential

DLUT931

Id Subject Object Predicate Lexical cue
T24899 86-97 Positive_regulation denotes LPS-induced
T24898 55-64 Positive_regulation denotes essential
T24897 112-122 Transcription denotes expression
T24885 98-106 Protein denotes SerpinB2
T24884 44-51 Protein denotes C/EBP-β
R17831 T24885 T24897 themeOf SerpinB2,expression
R17839 T24897 T24898 themeOf expression,essential
R17830 T24884 T24898 causeOf C/EBP-β,essential
R17840 T24897 T24899 themeOf expression,LPS-induced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T25032 65-122 Gene_expression denotes for constitutive and LPS-induced SerpinB2 mRNA expression
T25028 44-51 Protein denotes C/EBP-β
T25021 98-111 Protein denotes SerpinB2 mRNA
T25020 98-106 Protein denotes SerpinB2
T25018 86-97 Entity denotes LPS-induced
R17902 T25021 T25032 themeOf SerpinB2 mRNA,for constitutive and LPS-induced SerpinB2 mRNA expression

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T24937 55-64 Positive_regulation denotes essential
T24936 112-122 Gene_expression denotes expression
T24935 98-111 Protein denotes SerpinB2 mRNA
T24934 44-51 Protein denotes C/EBP-β
R17862 T24934 T24937 causeOf C/EBP-β,essential
R17863 T24935 T24936 themeOf SerpinB2 mRNA,expression
R17864 T24936 T24937 themeOf expression,essential

testone

Id Subject Object Predicate Lexical cue
T24530 107-122 Transcription denotes mRNA expression
T24529 90-97 Positive_regulation denotes induced
T24528 55-64 Positive_regulation denotes essential
T24516 98-106 Protein denotes SerpinB2
T24515 44-51 Protein denotes C/EBP-β
R17591 T24515 T24528 causeOf C/EBP-β,essential
R17592 T24516 T24530 themeOf SerpinB2,mRNA expression
R17596 T24529 T24528 themeOf induced,essential
R17597 T24530 T24529 themeOf mRNA expression,induced

test3

Id Subject Object Predicate Lexical cue
T24551 107-122 Transcription denotes mRNA expression
T24550 98-106 Protein denotes SerpinB2
T24549 90-97 Positive_regulation denotes induced
T24548 44-51 Protein denotes C/EBP-β
T24536 98-106 Protein denotes SerpinB2
T24535 44-51 Protein denotes C/EBP-β
R17598 T24548 T24549 causeOf C/EBP-β,induced
R17599 T24550 T24551 themeOf SerpinB2,mRNA expression
R17600 T24551 T24549 themeOf mRNA expression,induced