PMC:3589482 / 30937-32010
Annnotations
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T14758 | 1072-1073 | . | denotes | . |
| T14757 | 1068-1072 | NNP | denotes | mRNA |
| T14756 | 1059-1067 | NNP | denotes | SerpinB2 |
| T14755 | 1048-1058 | JJ | denotes | endogenous |
| T14754 | 1045-1047 | IN | denotes | of |
| T14753 | 1031-1044 | NN | denotes | transcription |
| T14752 | 1017-1030 | JJ | denotes | LPS-inducible |
| T14751 | 1013-1016 | CC | denotes | and |
| T14750 | 1000-1012 | JJ | denotes | constitutive |
| T14749 | 990-999 | VBG | denotes | mediating |
| T14748 | 986-989 | IN | denotes | for |
| T14747 | 977-985 | JJ | denotes | critical |
| T14746 | 974-976 | VBZ | denotes | is |
| T14745 | 972-973 | NN | denotes | β |
| T14744 | 971-972 | : | denotes | - |
| T14743 | 966-971 | NNP | denotes | C/EBP |
| T14742 | 961-965 | IN | denotes | that |
| T14741 | 956-960 | VBP | denotes | show |
| T14740 | 951-955 | NNS | denotes | data |
| T14739 | 945-950 | DT | denotes | These |
| T14738 | 943-944 | . | denotes | . |
| T14737 | 942-943 | -RRB- | denotes | ) |
| T14736 | 937-942 | NN | denotes | right |
| T14735 | 935-936 | , | denotes | , |
| T14734 | 933-935 | NNP | denotes | 6B |
| T14733 | 928-932 | NNP | denotes | Fig. |
| T14732 | 927-928 | -LRB- | denotes | ( |
| T14731 | 915-926 | NNS | denotes | macrophages |
| T14730 | 902-914 | JJ | denotes | inflammatory |
| T14729 | 890-901 | JJ | denotes | β-deficient |
| T14728 | 889-890 | : | denotes | - |
| T14727 | 884-889 | NNP | denotes | C/EBP |
| T14726 | 881-883 | IN | denotes | in |
| T14725 | 871-880 | VBN | denotes | decreased |
| T14724 | 857-870 | RB | denotes | significantly |
| T14723 | 853-856 | VBD | denotes | was |
| T14722 | 842-852 | NN | denotes | expression |
| T14721 | 837-841 | NNP | denotes | mRNA |
| T14720 | 828-836 | NNP | denotes | SerpinB2 |
| T14719 | 816-827 | JJ | denotes | LPS-induced |
| T14718 | 812-815 | CC | denotes | and |
| T14717 | 799-811 | JJ | denotes | constitutive |
| T14716 | 794-798 | DT | denotes | both |
| T14715 | 792-793 | , | denotes | , |
| T14714 | 788-792 | NNS | denotes | MEFs |
| T14713 | 785-787 | IN | denotes | in |
| T14712 | 776-784 | VBN | denotes | observed |
| T14711 | 772-775 | VBD | denotes | was |
| T14710 | 769-771 | IN | denotes | As |
| T14709 | 767-768 | . | denotes | . |
| T14708 | 766-767 | -RRB- | denotes | ) |
| T14707 | 762-766 | VBD | denotes | left |
| T14706 | 760-761 | , | denotes | , |
| T14705 | 758-760 | NNP | denotes | 6B |
| T14704 | 753-757 | NNP | denotes | Fig. |
| T14703 | 752-753 | -LRB- | denotes | ( |
| T14702 | 745-751 | NNS | denotes | shRNAs |
| T14701 | 734-744 | JJ | denotes | lentiviral |
| T14700 | 717-733 | JJ | denotes | species-specific |
| T14699 | 711-716 | VBG | denotes | using |
| T14698 | 706-710 | RP | denotes | down |
| T14697 | 698-705 | VBN | denotes | knocked |
| T14696 | 694-697 | VBD | denotes | was |
| T14695 | 683-693 | NN | denotes | expression |
| T14694 | 681-682 | NN | denotes | β |
| T14693 | 680-681 | : | denotes | - |
| T14692 | 675-680 | NNP | denotes | C/EBP |
| T14691 | 669-674 | WDT | denotes | which |
| T14690 | 666-668 | IN | denotes | in |
| T14689 | 654-665 | NNS | denotes | macrophages |
| T14688 | 641-653 | JJ | denotes | inflammatory |
| T14687 | 617-640 | JJ | denotes | thioglycollate-elicited |
| T14686 | 614-616 | IN | denotes | in |
| T14685 | 609-613 | VBN | denotes | seen |
| T14684 | 606-608 | VB | denotes | be |
| T14683 | 600-605 | MD | denotes | could |
| T14682 | 592-599 | NNS | denotes | effects |
| T14681 | 584-591 | JJ | denotes | similar |
| T14680 | 581-583 | IN | denotes | if |
| T14679 | 574-580 | VBN | denotes | tested |
| T14678 | 569-573 | JJ | denotes | next |
| T14677 | 566-568 | PRP | denotes | We |
| T14676 | 564-565 | . | denotes | . |
| T14675 | 555-564 | JJ | denotes | wild-type |
| T14674 | 552-554 | TO | denotes | to |
| T14673 | 543-551 | VBN | denotes | compared |
| T14672 | 540-542 | IN | denotes | as |
| T14671 | 535-539 | NNS | denotes | MEFs |
| T14670 | 533-534 | CD | denotes | − |
| T14669 | 532-533 | VBD | denotes | / |
| T14668 | 531-532 | NNP | denotes | − |
| T14667 | 526-531 | NNP | denotes | Cebpb |
| T14666 | 523-525 | IN | denotes | in |
| T14665 | 514-522 | VBN | denotes | dampened |
| T14664 | 500-513 | RB | denotes | significantly |
| T14663 | 496-499 | VBD | denotes | was |
| T14662 | 485-495 | NN | denotes | expression |
| T14661 | 480-484 | NNP | denotes | mRNA |
| T14660 | 471-479 | NNP | denotes | SerpinB2 |
| T14659 | 456-470 | JJ | denotes | LPS-stimulated |
| T14658 | 448-455 | IN | denotes | whereas |
| T14657 | 446-447 | , | denotes | , |
| T14656 | 445-446 | -RRB- | denotes | ) |
| T14655 | 443-445 | NNP | denotes | 6A |
| T14654 | 438-442 | NNP | denotes | Fig. |
| T14653 | 437-438 | -LRB- | denotes | ( |
| T14652 | 432-436 | NNS | denotes | MEFs |
| T14651 | 422-431 | JJ | denotes | wild-type |
| T14650 | 419-421 | IN | denotes | in |
| T14649 | 408-418 | NN | denotes | expression |
| T14648 | 403-407 | NNP | denotes | mRNA |
| T14647 | 394-402 | NNP | denotes | SerpinB2 |
| T14646 | 391-393 | IN | denotes | in |
| T14645 | 382-390 | NN | denotes | increase |
| T14644 | 379-381 | DT | denotes | an |
| T14643 | 368-378 | VBD | denotes | stimulated |
| T14642 | 364-367 | NNP | denotes | LPS |
| T14641 | 362-363 | . | denotes | . |
| T14640 | 352-362 | NN | denotes | expression |
| T14639 | 347-351 | NNP | denotes | mRNA |
| T14638 | 338-346 | NNP | denotes | SerpinB2 |
| T14637 | 327-337 | JJ | denotes | endogenous |
| T14636 | 316-326 | VBD | denotes | attenuated |
| T14635 | 314-315 | NN | denotes | β |
| T14634 | 313-314 | : | denotes | - |
| T14633 | 308-313 | NNP | denotes | C/EBP |
| T14632 | 305-307 | IN | denotes | of |
| T14631 | 297-304 | NN | denotes | absence |
| T14630 | 293-296 | DT | denotes | the |
| T14629 | 289-292 | CC | denotes | and |
| T14628 | 280-288 | NNP | denotes | SerpinB2 |
| T14627 | 269-279 | JJ | denotes | endogenous |
| T14626 | 266-268 | IN | denotes | of |
| T14625 | 259-265 | NNS | denotes | levels |
| T14624 | 255-258 | JJ | denotes | low |
| T14623 | 247-254 | VB | denotes | express |
| T14622 | 242-246 | NNS | denotes | MEFs |
| T14621 | 232-241 | JJ | denotes | Wild-type |
| T14620 | 230-231 | . | denotes | . |
| T14619 | 229-230 | NN | denotes | β |
| T14618 | 228-229 | : | denotes | - |
| T14617 | 223-228 | NNP | denotes | C/EBP |
| T14616 | 212-222 | JJ | denotes | endogenous |
| T14615 | 204-211 | VBP | denotes | express |
| T14614 | 189-203 | RB | denotes | constitutively |
| T14613 | 183-188 | NNS | denotes | cells |
| T14612 | 180-182 | CD | denotes | .7 |
| T14611 | 174-180 | NNP | denotes | RAW264 |
| T14610 | 168-173 | IN | denotes | since |
| T14609 | 166-167 | , | denotes | , |
| T14608 | 165-166 | -RRB- | denotes | ) |
| T14607 | 164-165 | NNP | denotes | + |
| T14606 | 163-164 | NNP | denotes | / |
| T14605 | 162-163 | NNP | denotes | + |
| T14604 | 157-162 | NNP | denotes | Cebpb |
| T14603 | 156-157 | -LRB- | denotes | ( |
| T14602 | 151-155 | NNS | denotes | MEFs |
| T14601 | 141-150 | JJ | denotes | wild-type |
| T14600 | 137-140 | CC | denotes | and |
| T14599 | 135-136 | -RRB- | denotes | ) |
| T14598 | 134-135 | NNP | denotes | − |
| T14597 | 133-134 | NNP | denotes | / |
| T14596 | 132-133 | NNP | denotes | − |
| T14595 | 126-131 | NNP | denotes | Cebpb |
| T14594 | 125-126 | -LRB- | denotes | ( |
| T14593 | 118-124 | NN | denotes | β-null |
| T14592 | 117-118 | : | denotes | - |
| T14591 | 112-117 | NNP | denotes | C/EBP |
| T14590 | 103-111 | VBD | denotes | utilized |
| T14589 | 100-102 | PRP | denotes | we |
| T14588 | 98-99 | , | denotes | , |
| T14587 | 95-98 | NNP | denotes | LPS |
| T14586 | 92-94 | TO | denotes | to |
| T14585 | 83-91 | NN | denotes | response |
| T14584 | 80-82 | IN | denotes | in |
| T14583 | 69-79 | NN | denotes | expression |
| T14582 | 64-68 | NNP | denotes | mRNA |
| T14581 | 55-63 | NNP | denotes | SerpinB2 |
| T14580 | 44-54 | JJ | denotes | endogenous |
| T14579 | 41-43 | TO | denotes | to |
| T14578 | 39-40 | NN | denotes | β |
| T14577 | 38-39 | : | denotes | - |
| T14576 | 33-38 | NNP | denotes | C/EBP |
| T14575 | 30-32 | IN | denotes | of |
| T14574 | 19-29 | NN | denotes | importance |
| T14573 | 15-18 | DT | denotes | the |
| T14572 | 3-14 | VB | denotes | investigate |
| T14571 | 0-2 | TO | denotes | To |
| R10703 | T14571 | T14572 | aux | To,investigate |
| R10704 | T14572 | T14590 | advcl | investigate,utilized |
| R10705 | T14573 | T14574 | det | the,importance |
| R10706 | T14574 | T14572 | dobj | importance,investigate |
| R10707 | T14575 | T14574 | prep | of,importance |
| R10708 | T14576 | T14578 | compound | C/EBP,β |
| R10709 | T14577 | T14578 | punct | -,β |
| R10710 | T14578 | T14575 | pobj | β,of |
| R10711 | T14579 | T14580 | aux | to,endogenous |
| R10712 | T14580 | T14583 | amod | endogenous,expression |
| R10713 | T14581 | T14582 | compound | SerpinB2,mRNA |
| R10714 | T14582 | T14583 | compound | mRNA,expression |
| R10715 | T14583 | T14572 | dobj | expression,investigate |
| R10716 | T14584 | T14572 | prep | in,investigate |
| R10717 | T14585 | T14584 | pobj | response,in |
| R10718 | T14586 | T14585 | prep | to,response |
| R10719 | T14587 | T14586 | pobj | LPS,to |
| R10720 | T14588 | T14590 | punct | ",",utilized |
| R10721 | T14589 | T14590 | nsubj | we,utilized |
| R10722 | T14590 | T14590 | ROOT | utilized,utilized |
| R10723 | T14591 | T14590 | dobj | C/EBP,utilized |
| R10724 | T14592 | T14591 | punct | -,C/EBP |
| R10725 | T14593 | T14591 | appos | β-null,C/EBP |
| R10726 | T14594 | T14598 | punct | (,− |
| R10727 | T14595 | T14598 | compound | Cebpb,− |
| R10728 | T14596 | T14598 | compound | −,− |
| R10729 | T14597 | T14598 | compound | /,− |
| R10730 | T14598 | T14593 | appos | −,β-null |
| R10731 | T14599 | T14598 | punct | ),− |
| R10732 | T14600 | T14593 | cc | and,β-null |
| R10733 | T14601 | T14602 | amod | wild-type,MEFs |
| R10734 | T14602 | T14593 | conj | MEFs,β-null |
| R10735 | T14603 | T14607 | punct | (,+ |
| R10736 | T14604 | T14607 | compound | Cebpb,+ |
| R10737 | T14605 | T14607 | compound | +,+ |
| R10738 | T14606 | T14607 | compound | /,+ |
| R10739 | T14607 | T14591 | appos | +,C/EBP |
| R10740 | T14608 | T14591 | punct | ),C/EBP |
| R10741 | T14609 | T14590 | punct | ",",utilized |
| R10742 | T14610 | T14615 | mark | since,express |
| R10743 | T14611 | T14615 | nsubj | RAW264,express |
| R10744 | T14612 | T14613 | nummod | .7,cells |
| R10745 | T14613 | T14615 | nsubj | cells,express |
| R10746 | T14614 | T14615 | advmod | constitutively,express |
| R10747 | T14615 | T14590 | advcl | express,utilized |
| R10748 | T14616 | T14619 | amod | endogenous,β |
| R10749 | T14617 | T14619 | compound | C/EBP,β |
| R10750 | T14618 | T14619 | punct | -,β |
| R10751 | T14619 | T14615 | dobj | β,express |
| R10752 | T14620 | T14590 | punct | .,utilized |
| R10753 | T14621 | T14623 | advmod | Wild-type,express |
| R10754 | T14622 | T14623 | nsubj | MEFs,express |
| R10755 | T14623 | T14623 | ROOT | express,express |
| R10756 | T14624 | T14625 | amod | low,levels |
| R10757 | T14625 | T14623 | dobj | levels,express |
| R10758 | T14626 | T14625 | prep | of,levels |
| R10759 | T14627 | T14628 | compound | endogenous,SerpinB2 |
| R10760 | T14628 | T14626 | pobj | SerpinB2,of |
| R10761 | T14629 | T14628 | cc | and,SerpinB2 |
| R10762 | T14630 | T14631 | det | the,absence |
| R10763 | T14631 | T14628 | conj | absence,SerpinB2 |
| R10764 | T14632 | T14631 | prep | of,absence |
| R10765 | T14633 | T14635 | compound | C/EBP,β |
| R10766 | T14634 | T14635 | punct | -,β |
| R10767 | T14635 | T14632 | pobj | β,of |
| R10768 | T14636 | T14640 | amod | attenuated,expression |
| R10769 | T14637 | T14640 | amod | endogenous,expression |
| R10770 | T14638 | T14639 | compound | SerpinB2,mRNA |
| R10771 | T14639 | T14640 | compound | mRNA,expression |
| R10772 | T14640 | T14623 | dobj | expression,express |
| R10773 | T14641 | T14623 | punct | .,express |
| R10774 | T14642 | T14643 | nsubj | LPS,stimulated |
| R10775 | T14643 | T14643 | ROOT | stimulated,stimulated |
| R10776 | T14644 | T14645 | det | an,increase |
| R10777 | T14645 | T14643 | dobj | increase,stimulated |
| R10778 | T14646 | T14645 | prep | in,increase |
| R10779 | T14647 | T14648 | compound | SerpinB2,mRNA |
| R10780 | T14648 | T14649 | compound | mRNA,expression |
| R10781 | T14649 | T14646 | pobj | expression,in |
| R10782 | T14650 | T14649 | prep | in,expression |
| R10783 | T14651 | T14652 | amod | wild-type,MEFs |
| R10784 | T14652 | T14650 | pobj | MEFs,in |
| R10785 | T14653 | T14655 | punct | (,6A |
| R10786 | T14654 | T14655 | compound | Fig.,6A |
| R10787 | T14655 | T14645 | appos | 6A,increase |
| R10788 | T14656 | T14655 | punct | ),6A |
| R10789 | T14657 | T14643 | punct | ",",stimulated |
| R10790 | T14658 | T14665 | mark | whereas,dampened |
| R10791 | T14659 | T14662 | amod | LPS-stimulated,expression |
| R10792 | T14660 | T14661 | compound | SerpinB2,mRNA |
| R10793 | T14661 | T14662 | compound | mRNA,expression |
| R10794 | T14662 | T14665 | nsubjpass | expression,dampened |
| R10795 | T14663 | T14665 | auxpass | was,dampened |
| R10796 | T14664 | T14665 | advmod | significantly,dampened |
| R10797 | T14665 | T14643 | advcl | dampened,stimulated |
| R10798 | T14666 | T14665 | prep | in,dampened |
| R10799 | T14667 | T14668 | compound | Cebpb,− |
| R10800 | T14668 | T14666 | pobj | −,in |
| R10801 | T14669 | T14643 | conj | /,stimulated |
| R10802 | T14670 | T14671 | nummod | −,MEFs |
| R10803 | T14671 | T14669 | dobj | MEFs,/ |
| R10804 | T14672 | T14669 | prep | as,/ |
| R10805 | T14673 | T14672 | prep | compared,as |
| R10806 | T14674 | T14675 | aux | to,wild-type |
| R10807 | T14675 | T14673 | xcomp | wild-type,compared |
| R10808 | T14676 | T14643 | punct | .,stimulated |
| R10809 | T14677 | T14679 | nsubj | We,tested |
| R10810 | T14678 | T14679 | advmod | next,tested |
| R10811 | T14679 | T14679 | ROOT | tested,tested |
| R10812 | T14680 | T14685 | mark | if,seen |
| R10813 | T14681 | T14682 | amod | similar,effects |
| R10814 | T14682 | T14685 | nsubjpass | effects,seen |
| R10815 | T14683 | T14685 | aux | could,seen |
| R10816 | T14684 | T14685 | auxpass | be,seen |
| R10817 | T14685 | T14679 | advcl | seen,tested |
| R10818 | T14686 | T14685 | prep | in,seen |
| R10819 | T14687 | T14689 | amod | thioglycollate-elicited,macrophages |
| R10820 | T14688 | T14689 | amod | inflammatory,macrophages |
| R10821 | T14689 | T14686 | pobj | macrophages,in |
| R10822 | T14690 | T14697 | prep | in,knocked |
| R10823 | T14691 | T14690 | pobj | which,in |
| R10824 | T14692 | T14695 | compound | C/EBP,expression |
| R10825 | T14693 | T14694 | punct | -,β |
| R10826 | T14694 | T14695 | compound | β,expression |
| R10827 | T14695 | T14697 | nsubjpass | expression,knocked |
| R10828 | T14696 | T14697 | auxpass | was,knocked |
| R10829 | T14697 | T14679 | conj | knocked,tested |
| R10830 | T14698 | T14697 | prt | down,knocked |
| R10831 | T14699 | T14697 | advcl | using,knocked |
| R10832 | T14700 | T14702 | nmod | species-specific,shRNAs |
| R10833 | T14701 | T14702 | amod | lentiviral,shRNAs |
| R10834 | T14702 | T14699 | dobj | shRNAs,using |
| R10835 | T14703 | T14702 | punct | (,shRNAs |
| R10836 | T14704 | T14705 | compound | Fig.,6B |
| R10837 | T14705 | T14702 | appos | 6B,shRNAs |
| R10838 | T14706 | T14707 | punct | ",",left |
| R10839 | T14707 | T14702 | parataxis | left,shRNAs |
| R10840 | T14708 | T14702 | punct | ),shRNAs |
| R10841 | T14709 | T14697 | punct | .,knocked |
| R10842 | T14710 | T14712 | mark | As,observed |
| R10843 | T14711 | T14712 | auxpass | was,observed |
| R10844 | T14712 | T14725 | advcl | observed,decreased |
| R10845 | T14713 | T14712 | prep | in,observed |
| R10846 | T14714 | T14713 | pobj | MEFs,in |
| R10847 | T14715 | T14712 | punct | ",",observed |
| R10848 | T14716 | T14717 | preconj | both,constitutive |
| R10849 | T14717 | T14722 | amod | constitutive,expression |
| R10850 | T14718 | T14717 | cc | and,constitutive |
| R10851 | T14719 | T14717 | conj | LPS-induced,constitutive |
| R10852 | T14720 | T14722 | compound | SerpinB2,expression |
| R10853 | T14721 | T14722 | compound | mRNA,expression |
| R10854 | T14722 | T14725 | nsubjpass | expression,decreased |
| R10855 | T14723 | T14725 | auxpass | was,decreased |
| R10856 | T14724 | T14725 | advmod | significantly,decreased |
| R10857 | T14725 | T14725 | ROOT | decreased,decreased |
| R10858 | T14726 | T14725 | prep | in,decreased |
| R10859 | T14727 | T14726 | pobj | C/EBP,in |
| R10860 | T14728 | T14729 | punct | -,β-deficient |
| R10861 | T14729 | T14731 | amod | β-deficient,macrophages |
| R10862 | T14730 | T14731 | amod | inflammatory,macrophages |
| R10863 | T14731 | T14725 | npadvmod | macrophages,decreased |
| R10864 | T14732 | T14734 | punct | (,6B |
| R10865 | T14733 | T14734 | compound | Fig.,6B |
| R10866 | T14734 | T14731 | appos | 6B,macrophages |
| R10867 | T14735 | T14736 | punct | ",",right |
| R10868 | T14736 | T14734 | appos | right,6B |
| R10869 | T14737 | T14734 | punct | ),6B |
| R10870 | T14738 | T14725 | punct | .,decreased |
| R10871 | T14739 | T14740 | det | These,data |
| R10872 | T14740 | T14741 | nsubj | data,show |
| R10873 | T14741 | T14741 | ROOT | show,show |
| R10874 | T14742 | T14746 | mark | that,is |
| R10875 | T14743 | T14745 | compound | C/EBP,β |
| R10876 | T14744 | T14745 | punct | -,β |
| R10877 | T14745 | T14746 | nsubj | β,is |
| R10878 | T14746 | T14741 | ccomp | is,show |
| R10879 | T14747 | T14746 | acomp | critical,is |
| R10880 | T14748 | T14747 | prep | for,critical |
| R10881 | T14749 | T14748 | pcomp | mediating,for |
| R10882 | T14750 | T14753 | amod | constitutive,transcription |
| R10883 | T14751 | T14750 | cc | and,constitutive |
| R10884 | T14752 | T14750 | conj | LPS-inducible,constitutive |
| R10885 | T14753 | T14749 | dobj | transcription,mediating |
| R10886 | T14754 | T14753 | prep | of,transcription |
| R10887 | T14755 | T14757 | amod | endogenous,mRNA |
| R10888 | T14756 | T14757 | compound | SerpinB2,mRNA |
| R10889 | T14757 | T14754 | pobj | mRNA,of |
| R10890 | T14758 | T14741 | punct | .,show |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T14231 | 1068-1072 | NN | denotes | mRNA |
| T14230 | 1059-1067 | NN | denotes | SerpinB2 |
| T14229 | 1048-1058 | JJ | denotes | endogenous |
| T14228 | 1045-1047 | IN | denotes | of |
| T14227 | 1031-1044 | NN | denotes | transcription |
| T14226 | 1017-1030 | JJ | denotes | LPS-inducible |
| T14225 | 1013-1016 | CC | denotes | and |
| T14224 | 1000-1012 | JJ | denotes | constitutive |
| T14223 | 990-999 | VB | denotes | mediating |
| T14222 | 986-989 | IN | denotes | for |
| T14221 | 977-985 | JJ | denotes | critical |
| T14220 | 974-976 | VB | denotes | is |
| T14219 | 966-973 | NN | denotes | C/EBP-β |
| T14218 | 961-965 | IN | denotes | that |
| T14217 | 956-960 | VB | denotes | show |
| T14216 | 951-955 | NN | denotes | data |
| T14215 | 945-950 | DT | denotes | These |
| T14214 | 942-943 | -RRB- | denotes | ) |
| T14213 | 937-942 | JJ | denotes | right |
| T14212 | 935-936 | -COMMA- | denotes | , |
| T14211 | 933-935 | NN | denotes | 6B |
| T14210 | 928-932 | NNP | denotes | Fig. |
| T14209 | 927-928 | -LRB- | denotes | ( |
| T14208 | 915-926 | NN | denotes | macrophages |
| T14207 | 902-914 | JJ | denotes | inflammatory |
| T14206 | 884-901 | JJ | denotes | C/EBP-β-deficient |
| T14205 | 881-883 | IN | denotes | in |
| T14204 | 871-880 | VB | denotes | decreased |
| T14203 | 857-870 | RB | denotes | significantly |
| T14202 | 853-856 | VB | denotes | was |
| T14201 | 842-852 | NN | denotes | expression |
| T14200 | 837-841 | NN | denotes | mRNA |
| T14199 | 828-836 | NN | denotes | SerpinB2 |
| T14198 | 816-827 | JJ | denotes | LPS-induced |
| T14197 | 812-815 | CC | denotes | and |
| T14196 | 799-811 | JJ | denotes | constitutive |
| T14195 | 794-798 | CC | denotes | both |
| T14194 | 792-793 | -COMMA- | denotes | , |
| T14193 | 788-792 | NN | denotes | MEFs |
| T14192 | 785-787 | IN | denotes | in |
| T14191 | 776-784 | VB | denotes | observed |
| T14190 | 772-775 | VB | denotes | was |
| T14189 | 769-771 | IN | denotes | As |
| T14188 | 766-767 | -RRB- | denotes | ) |
| T14187 | 762-766 | JJ | denotes | left |
| T14186 | 760-761 | -COMMA- | denotes | , |
| T14185 | 758-760 | NN | denotes | 6B |
| T14184 | 753-757 | NNP | denotes | Fig. |
| T14183 | 752-753 | -LRB- | denotes | ( |
| T14182 | 745-751 | NN | denotes | shRNAs |
| T14181 | 734-744 | JJ | denotes | lentiviral |
| T14180 | 717-733 | JJ | denotes | species-specific |
| T14179 | 711-716 | VB | denotes | using |
| T14178 | 706-710 | RP | denotes | down |
| T14177 | 698-705 | VB | denotes | knocked |
| T14176 | 694-697 | VB | denotes | was |
| T14175 | 683-693 | NN | denotes | expression |
| T14174 | 675-682 | NN | denotes | C/EBP-β |
| T14173 | 669-674 | WDT | denotes | which |
| T14172 | 666-668 | IN | denotes | in |
| T14171 | 654-665 | NN | denotes | macrophages |
| T14170 | 641-653 | JJ | denotes | inflammatory |
| T14169 | 617-640 | JJ | denotes | thioglycollate-elicited |
| T14168 | 614-616 | IN | denotes | in |
| T14167 | 609-613 | VB | denotes | seen |
| T14166 | 606-608 | VB | denotes | be |
| T14165 | 600-605 | MD | denotes | could |
| T14164 | 592-599 | NN | denotes | effects |
| T14163 | 584-591 | JJ | denotes | similar |
| T14162 | 581-583 | IN | denotes | if |
| T14161 | 574-580 | VB | denotes | tested |
| T14160 | 569-573 | RB | denotes | next |
| T14159 | 566-568 | PRP | denotes | We |
| T14158 | 555-564 | JJ | denotes | wild-type |
| T14157 | 552-554 | TO | denotes | to |
| T14156 | 543-551 | VB | denotes | compared |
| T14155 | 540-542 | IN | denotes | as |
| T14154 | 535-539 | NN | denotes | MEFs |
| T14153 | 526-534 | NNP | denotes | Cebpb−/− |
| T14152 | 523-525 | IN | denotes | in |
| T14151 | 514-522 | VB | denotes | dampened |
| T14150 | 500-513 | RB | denotes | significantly |
| T14149 | 496-499 | VB | denotes | was |
| T14148 | 485-495 | NN | denotes | expression |
| T14147 | 480-484 | NN | denotes | mRNA |
| T14146 | 471-479 | NN | denotes | SerpinB2 |
| T14145 | 456-470 | JJ | denotes | LPS-stimulated |
| T14144 | 448-455 | IN | denotes | whereas |
| T14143 | 446-447 | -COMMA- | denotes | , |
| T14142 | 445-446 | -RRB- | denotes | ) |
| T14141 | 443-445 | NN | denotes | 6A |
| T14140 | 438-442 | NNP | denotes | Fig. |
| T14139 | 437-438 | -LRB- | denotes | ( |
| T14138 | 432-436 | NN | denotes | MEFs |
| T14137 | 422-431 | JJ | denotes | wild-type |
| T14136 | 419-421 | IN | denotes | in |
| T14135 | 408-418 | NN | denotes | expression |
| T14134 | 403-407 | NN | denotes | mRNA |
| T14133 | 394-402 | NN | denotes | SerpinB2 |
| T14132 | 391-393 | IN | denotes | in |
| T14131 | 382-390 | NN | denotes | increase |
| T14130 | 379-381 | DT | denotes | an |
| T14129 | 368-378 | VB | denotes | stimulated |
| T14128 | 364-367 | NN | denotes | LPS |
| T14127 | 352-362 | NN | denotes | expression |
| T14126 | 347-351 | NN | denotes | mRNA |
| T14125 | 338-346 | NN | denotes | SerpinB2 |
| T14124 | 327-337 | JJ | denotes | endogenous |
| T14123 | 316-326 | VB | denotes | attenuated |
| T14122 | 308-315 | NN | denotes | C/EBP-β |
| T14121 | 305-307 | IN | denotes | of |
| T14120 | 297-304 | NN | denotes | absence |
| T14119 | 293-296 | DT | denotes | the |
| T14118 | 289-292 | CC | denotes | and |
| T14117 | 280-288 | NN | denotes | SerpinB2 |
| T14116 | 269-279 | JJ | denotes | endogenous |
| T14115 | 266-268 | IN | denotes | of |
| T14114 | 259-265 | NN | denotes | levels |
| T14113 | 255-258 | JJ | denotes | low |
| T14112 | 247-254 | VB | denotes | express |
| T14111 | 242-246 | NN | denotes | MEFs |
| T14110 | 232-241 | JJ | denotes | Wild-type |
| T14109 | 223-230 | NN | denotes | C/EBP-β |
| T14108 | 212-222 | JJ | denotes | endogenous |
| T14107 | 204-211 | VB | denotes | express |
| T14106 | 189-203 | RB | denotes | constitutively |
| T14105 | 183-188 | NN | denotes | cells |
| T14104 | 174-182 | NN | denotes | RAW264.7 |
| T14103 | 168-173 | IN | denotes | since |
| T14102 | 166-167 | -COMMA- | denotes | , |
| T14101 | 165-166 | -RRB- | denotes | ) |
| T14100 | 157-165 | JJ | denotes | Cebpb+/+ |
| T14099 | 156-157 | -LRB- | denotes | ( |
| T14098 | 151-155 | NN | denotes | MEFs |
| T14097 | 141-150 | JJ | denotes | wild-type |
| T14096 | 137-140 | CC | denotes | and |
| T14095 | 135-136 | -RRB- | denotes | ) |
| T14094 | 126-135 | NN | denotes | Cebpb −/− |
| T14093 | 125-126 | -LRB- | denotes | ( |
| T14092 | 112-124 | JJ | denotes | C/EBP-β-null |
| T14091 | 103-111 | VB | denotes | utilized |
| T14090 | 100-102 | PRP | denotes | we |
| T14089 | 98-99 | -COMMA- | denotes | , |
| T14088 | 95-98 | NN | denotes | LPS |
| T14087 | 92-94 | TO | denotes | to |
| T14086 | 83-91 | NN | denotes | response |
| T14085 | 80-82 | IN | denotes | in |
| T14084 | 69-79 | NN | denotes | expression |
| T14083 | 64-68 | NN | denotes | mRNA |
| T14082 | 55-63 | NN | denotes | SerpinB2 |
| T14081 | 44-54 | JJ | denotes | endogenous |
| T14080 | 41-43 | TO | denotes | to |
| T14079 | 33-40 | NN | denotes | C/EBP-β |
| T14078 | 30-32 | IN | denotes | of |
| T14077 | 19-29 | NN | denotes | importance |
| T14076 | 15-18 | DT | denotes | the |
| T14075 | 3-14 | VB | denotes | investigate |
| T14074 | 0-2 | TO | denotes | To |
| R10354 | T14075 | T14074 | arg1Of | investigate,To |
| R10355 | T14077 | T14075 | arg2Of | importance,investigate |
| R10356 | T14077 | T14076 | arg1Of | importance,the |
| R10357 | T14077 | T14078 | arg1Of | importance,of |
| R10358 | T14077 | T14080 | arg1Of | importance,to |
| R10359 | T14079 | T14078 | arg2Of | C/EBP-β,of |
| R10360 | T14084 | T14080 | arg2Of | expression,to |
| R10361 | T14084 | T14081 | arg1Of | expression,endogenous |
| R10362 | T14084 | T14082 | arg1Of | expression,SerpinB2 |
| R10363 | T14084 | T14083 | arg1Of | expression,mRNA |
| R10364 | T14084 | T14085 | arg1Of | expression,in |
| R10365 | T14085 | T14087 | arg1Of | in,to |
| R10366 | T14086 | T14085 | arg2Of | response,in |
| R10367 | T14088 | T14085 | arg3Of | LPS,in |
| R10368 | T14090 | T14075 | arg1Of | we,investigate |
| R10369 | T14090 | T14091 | arg1Of | we,utilized |
| R10370 | T14091 | T14074 | modOf | utilized,To |
| R10371 | T14091 | T14089 | arg1Of | utilized,"," |
| R10372 | T14091 | T14102 | arg1Of | utilized,"," |
| R10373 | T14091 | T14103 | arg1Of | utilized,since |
| R10374 | T14092 | T14093 | arg1Of | C/EBP-β-null,( |
| R10375 | T14092 | T14096 | arg1Of | C/EBP-β-null,and |
| R10376 | T14094 | T14093 | arg2Of | Cebpb −/−,( |
| R10377 | T14095 | T14093 | arg3Of | ),( |
| R10378 | T14096 | T14091 | arg2Of | and,utilized |
| R10379 | T14098 | T14096 | arg2Of | MEFs,and |
| R10380 | T14098 | T14097 | arg1Of | MEFs,wild-type |
| R10381 | T14098 | T14099 | arg1Of | MEFs,( |
| R10382 | T14100 | T14099 | arg2Of | Cebpb+/+,( |
| R10383 | T14101 | T14099 | arg3Of | ),( |
| R10384 | T14105 | T14104 | arg1Of | cells,RAW264.7 |
| R10385 | T14105 | T14107 | arg1Of | cells,express |
| R10386 | T14107 | T14103 | arg2Of | express,since |
| R10387 | T14107 | T14106 | arg1Of | express,constitutively |
| R10388 | T14109 | T14107 | arg2Of | C/EBP-β,express |
| R10389 | T14109 | T14108 | arg1Of | C/EBP-β,endogenous |
| R10390 | T14111 | T14110 | arg1Of | MEFs,Wild-type |
| R10391 | T14111 | T14112 | arg1Of | MEFs,express |
| R10392 | T14112 | T14118 | arg1Of | express,and |
| R10393 | T14114 | T14112 | arg2Of | levels,express |
| R10394 | T14114 | T14113 | arg1Of | levels,low |
| R10395 | T14114 | T14115 | arg1Of | levels,of |
| R10396 | T14117 | T14115 | arg2Of | SerpinB2,of |
| R10397 | T14117 | T14116 | arg1Of | SerpinB2,endogenous |
| R10398 | T14120 | T14119 | arg1Of | absence,the |
| R10399 | T14120 | T14121 | arg1Of | absence,of |
| R10400 | T14120 | T14123 | arg1Of | absence,attenuated |
| R10401 | T14122 | T14121 | arg2Of | C/EBP-β,of |
| R10402 | T14123 | T14118 | arg2Of | attenuated,and |
| R10403 | T14127 | T14123 | arg2Of | expression,attenuated |
| R10404 | T14127 | T14124 | arg1Of | expression,endogenous |
| R10405 | T14127 | T14125 | arg1Of | expression,SerpinB2 |
| R10406 | T14127 | T14126 | arg1Of | expression,mRNA |
| R10407 | T14128 | T14129 | arg1Of | LPS,stimulated |
| R10408 | T14129 | T14139 | arg1Of | stimulated,( |
| R10409 | T14129 | T14143 | arg1Of | stimulated,"," |
| R10410 | T14129 | T14144 | arg1Of | stimulated,whereas |
| R10411 | T14131 | T14129 | arg2Of | increase,stimulated |
| R10412 | T14131 | T14130 | arg1Of | increase,an |
| R10413 | T14131 | T14132 | arg1Of | increase,in |
| R10414 | T14131 | T14136 | arg1Of | increase,in |
| R10415 | T14135 | T14132 | arg2Of | expression,in |
| R10416 | T14135 | T14133 | arg1Of | expression,SerpinB2 |
| R10417 | T14135 | T14134 | arg1Of | expression,mRNA |
| R10418 | T14138 | T14136 | arg2Of | MEFs,in |
| R10419 | T14138 | T14137 | arg1Of | MEFs,wild-type |
| R10420 | T14141 | T14139 | arg2Of | 6A,( |
| R10421 | T14141 | T14140 | arg1Of | 6A,Fig. |
| R10422 | T14142 | T14139 | arg3Of | ),( |
| R10423 | T14148 | T14145 | arg1Of | expression,LPS-stimulated |
| R10424 | T14148 | T14146 | arg1Of | expression,SerpinB2 |
| R10425 | T14148 | T14147 | arg1Of | expression,mRNA |
| R10426 | T14148 | T14149 | arg1Of | expression,was |
| R10427 | T14148 | T14151 | arg2Of | expression,dampened |
| R10428 | T14151 | T14144 | arg2Of | dampened,whereas |
| R10429 | T14151 | T14149 | arg2Of | dampened,was |
| R10430 | T14151 | T14150 | arg1Of | dampened,significantly |
| R10431 | T14151 | T14152 | arg1Of | dampened,in |
| R10432 | T14154 | T14152 | arg2Of | MEFs,in |
| R10433 | T14154 | T14153 | arg1Of | MEFs,Cebpb−/− |
| R10434 | T14155 | T14151 | arg3Of | as,dampened |
| R10435 | T14156 | T14155 | arg2Of | compared,as |
| R10436 | T14156 | T14157 | arg1Of | compared,to |
| R10437 | T14158 | T14157 | arg2Of | wild-type,to |
| R10438 | T14159 | T14161 | arg1Of | We,tested |
| R10439 | T14161 | T14160 | arg1Of | tested,next |
| R10440 | T14164 | T14163 | arg1Of | effects,similar |
| R10441 | T14164 | T14165 | arg1Of | effects,could |
| R10442 | T14164 | T14166 | arg1Of | effects,be |
| R10443 | T14164 | T14167 | arg2Of | effects,seen |
| R10444 | T14167 | T14161 | arg2Of | seen,tested |
| R10445 | T14167 | T14162 | arg1Of | seen,if |
| R10446 | T14167 | T14165 | arg2Of | seen,could |
| R10447 | T14167 | T14166 | arg2Of | seen,be |
| R10448 | T14167 | T14168 | arg1Of | seen,in |
| R10449 | T14167 | T14183 | arg1Of | seen,( |
| R10450 | T14171 | T14168 | arg2Of | macrophages,in |
| R10451 | T14171 | T14169 | arg1Of | macrophages,thioglycollate-elicited |
| R10452 | T14171 | T14170 | arg1Of | macrophages,inflammatory |
| R10453 | T14171 | T14172 | arg2Of | macrophages,in |
| R10454 | T14171 | T14173 | arg1Of | macrophages,which |
| R10455 | T14175 | T14174 | arg1Of | expression,C/EBP-β |
| R10456 | T14175 | T14176 | arg1Of | expression,was |
| R10457 | T14175 | T14177 | arg2Of | expression,knocked |
| R10458 | T14177 | T14172 | arg1Of | knocked,in |
| R10459 | T14177 | T14176 | arg2Of | knocked,was |
| R10460 | T14177 | T14178 | arg1Of | knocked,down |
| R10461 | T14177 | T14179 | modOf | knocked,using |
| R10462 | T14182 | T14179 | arg2Of | shRNAs,using |
| R10463 | T14182 | T14180 | arg1Of | shRNAs,species-specific |
| R10464 | T14182 | T14181 | arg1Of | shRNAs,lentiviral |
| R10465 | T14185 | T14183 | arg2Of | 6B,( |
| R10466 | T14185 | T14184 | arg1Of | 6B,Fig. |
| R10467 | T14185 | T14186 | arg1Of | 6B,"," |
| R10468 | T14187 | T14186 | arg2Of | left,"," |
| R10469 | T14188 | T14183 | arg3Of | ),( |
| R10470 | T14191 | T14189 | arg2Of | observed,As |
| R10471 | T14191 | T14190 | arg2Of | observed,was |
| R10472 | T14191 | T14192 | arg1Of | observed,in |
| R10473 | T14193 | T14192 | arg2Of | MEFs,in |
| R10474 | T14196 | T14197 | arg1Of | constitutive,and |
| R10475 | T14198 | T14197 | arg2Of | LPS-induced,and |
| R10476 | T14201 | T14195 | arg1Of | expression,both |
| R10477 | T14201 | T14196 | arg1Of | expression,constitutive |
| R10478 | T14201 | T14198 | arg1Of | expression,LPS-induced |
| R10479 | T14201 | T14199 | arg1Of | expression,SerpinB2 |
| R10480 | T14201 | T14200 | arg1Of | expression,mRNA |
| R10481 | T14201 | T14202 | arg1Of | expression,was |
| R10482 | T14201 | T14204 | arg2Of | expression,decreased |
| R10483 | T14204 | T14189 | arg1Of | decreased,As |
| R10484 | T14204 | T14194 | arg1Of | decreased,"," |
| R10485 | T14204 | T14202 | arg2Of | decreased,was |
| R10486 | T14204 | T14203 | arg1Of | decreased,significantly |
| R10487 | T14204 | T14205 | arg1Of | decreased,in |
| R10488 | T14204 | T14209 | arg1Of | decreased,( |
| R10489 | T14208 | T14205 | arg2Of | macrophages,in |
| R10490 | T14208 | T14206 | arg1Of | macrophages,C/EBP-β-deficient |
| R10491 | T14208 | T14207 | arg1Of | macrophages,inflammatory |
| R10492 | T14211 | T14209 | arg2Of | 6B,( |
| R10493 | T14211 | T14210 | arg1Of | 6B,Fig. |
| R10494 | T14211 | T14212 | arg1Of | 6B,"," |
| R10495 | T14213 | T14212 | arg2Of | right,"," |
| R10496 | T14214 | T14209 | arg3Of | ),( |
| R10497 | T14216 | T14215 | arg1Of | data,These |
| R10498 | T14216 | T14217 | arg1Of | data,show |
| R10499 | T14219 | T14220 | arg1Of | C/EBP-β,is |
| R10500 | T14219 | T14221 | arg1Of | C/EBP-β,critical |
| R10501 | T14220 | T14217 | arg2Of | is,show |
| R10502 | T14220 | T14218 | arg1Of | is,that |
| R10503 | T14221 | T14220 | arg2Of | critical,is |
| R10504 | T14221 | T14222 | arg1Of | critical,for |
| R10505 | T14223 | T14222 | arg2Of | mediating,for |
| R10506 | T14224 | T14225 | arg1Of | constitutive,and |
| R10507 | T14226 | T14225 | arg2Of | LPS-inducible,and |
| R10508 | T14227 | T14223 | arg2Of | transcription,mediating |
| R10509 | T14227 | T14224 | arg1Of | transcription,constitutive |
| R10510 | T14227 | T14226 | arg1Of | transcription,LPS-inducible |
| R10511 | T14227 | T14228 | arg1Of | transcription,of |
| R10512 | T14231 | T14228 | arg2Of | mRNA,of |
| R10513 | T14231 | T14229 | arg1Of | mRNA,endogenous |
| R10514 | T14231 | T14230 | arg1Of | mRNA,SerpinB2 |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T14036 | 1059-1067 | Protein | denotes | SerpinB2 |
| T14035 | 966-973 | Protein | denotes | C/EBP-β |
| T14034 | 884-891 | Protein | denotes | C/EBP-β |
| T14033 | 828-836 | Protein | denotes | SerpinB2 |
| T14032 | 675-682 | Protein | denotes | C/EBP-β |
| T14031 | 526-531 | Protein | denotes | Cebpb |
| T14030 | 471-479 | Protein | denotes | SerpinB2 |
| T14029 | 394-402 | Protein | denotes | SerpinB2 |
| T14028 | 338-346 | Protein | denotes | SerpinB2 |
| T14027 | 308-315 | Protein | denotes | C/EBP-β |
| T14026 | 280-288 | Protein | denotes | SerpinB2 |
| T14025 | 223-230 | Protein | denotes | C/EBP-β |
| T14024 | 157-162 | Protein | denotes | Cebpb |
| T14023 | 126-131 | Protein | denotes | Cebpb |
| T14022 | 112-119 | Protein | denotes | C/EBP-β |
| T14021 | 55-63 | Protein | denotes | SerpinB2 |
| T14020 | 33-40 | Protein | denotes | C/EBP-β |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T14300 | 884-891 | http://www.uniprot.org/uniprot/P28033 | denotes | C/EBP-β |
| T14299 | 675-682 | http://www.uniprot.org/uniprot/P28033 | denotes | C/EBP-β |
| T14298 | 308-315 | http://www.uniprot.org/uniprot/P28033 | denotes | C/EBP-β |
| T14297 | 223-230 | http://www.uniprot.org/uniprot/P28033 | denotes | C/EBP-β |
| T14296 | 112-119 | http://www.uniprot.org/uniprot/P28033 | denotes | C/EBP-β |
| T14295 | 33-40 | http://www.uniprot.org/uniprot/P28033 | denotes | C/EBP-β |
| T14309 | 1059-1067 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
| T14308 | 828-836 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
| T14307 | 471-479 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
| T14306 | 394-402 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
| T14305 | 338-346 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
| T14304 | 280-288 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
| T14303 | 55-63 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
| T14301 | 966-973 | http://www.uniprot.org/uniprot/P28033 | denotes | C/EBP-β |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T14038 | 1031-1044 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcription |
| T14037 | 83-98 | http://purl.obolibrary.org/obo/GO_0032496 | denotes | response to LPS |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T14039 | 183-188 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T13966 | 945-1073 | Sentence | denotes | These data show that C/EBP-β is critical for mediating constitutive and LPS-inducible transcription of endogenous SerpinB2 mRNA. |
| T13965 | 769-944 | Sentence | denotes | As was observed in MEFs, both constitutive and LPS-induced SerpinB2 mRNA expression was significantly decreased in C/EBP-β-deficient inflammatory macrophages (Fig. 6B, right). |
| T13964 | 566-768 | Sentence | denotes | We next tested if similar effects could be seen in thioglycollate-elicited inflammatory macrophages in which C/EBP-β expression was knocked down using species-specific lentiviral shRNAs (Fig. 6B, left). |
| T13963 | 364-565 | Sentence | denotes | LPS stimulated an increase in SerpinB2 mRNA expression in wild-type MEFs (Fig. 6A), whereas LPS-stimulated SerpinB2 mRNA expression was significantly dampened in Cebpb−/− MEFs as compared to wild-type. |
| T13962 | 232-363 | Sentence | denotes | Wild-type MEFs express low levels of endogenous SerpinB2 and the absence of C/EBP-β attenuated endogenous SerpinB2 mRNA expression. |
| T13961 | 0-231 | Sentence | denotes | To investigate the importance of C/EBP-β to endogenous SerpinB2 mRNA expression in response to LPS, we utilized C/EBP-β-null (Cebpb −/−) and wild-type MEFs (Cebpb+/+), since RAW264.7 cells constitutively express endogenous C/EBP-β. |
| T190 | 0-231 | Sentence | denotes | To investigate the importance of C/EBP-β to endogenous SerpinB2 mRNA expression in response to LPS, we utilized C/EBP-β-null (Cebpb −/−) and wild-type MEFs (Cebpb+/+), since RAW264.7 cells constitutively express endogenous C/EBP-β. |
| T191 | 232-363 | Sentence | denotes | Wild-type MEFs express low levels of endogenous SerpinB2 and the absence of C/EBP-β attenuated endogenous SerpinB2 mRNA expression. |
| T192 | 364-565 | Sentence | denotes | LPS stimulated an increase in SerpinB2 mRNA expression in wild-type MEFs (Fig. 6A), whereas LPS-stimulated SerpinB2 mRNA expression was significantly dampened in Cebpb−/− MEFs as compared to wild-type. |
| T193 | 566-768 | Sentence | denotes | We next tested if similar effects could be seen in thioglycollate-elicited inflammatory macrophages in which C/EBP-β expression was knocked down using species-specific lentiviral shRNAs (Fig. 6B, left). |
| T194 | 769-944 | Sentence | denotes | As was observed in MEFs, both constitutive and LPS-induced SerpinB2 mRNA expression was significantly decreased in C/EBP-β-deficient inflammatory macrophages (Fig. 6B, right). |
| T195 | 945-1073 | Sentence | denotes | These data show that C/EBP-β is critical for mediating constitutive and LPS-inducible transcription of endogenous SerpinB2 mRNA. |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T14058 | 1059-1067 | Protein | denotes | SerpinB2 |
| T14057 | 966-973 | Protein | denotes | C/EBP-β |
| T14056 | 884-891 | Protein | denotes | C/EBP-β |
| T14055 | 828-836 | Protein | denotes | SerpinB2 |
| T14054 | 675-682 | Protein | denotes | C/EBP-β |
| T14053 | 526-531 | Protein | denotes | Cebpb |
| T14052 | 471-479 | Protein | denotes | SerpinB2 |
| T14051 | 394-402 | Protein | denotes | SerpinB2 |
| T14050 | 338-346 | Protein | denotes | SerpinB2 |
| T14049 | 308-315 | Protein | denotes | C/EBP-β |
| T14048 | 280-288 | Protein | denotes | SerpinB2 |
| T14047 | 223-230 | Protein | denotes | C/EBP-β |
| T14046 | 157-162 | Protein | denotes | Cebpb |
| T14045 | 126-131 | Protein | denotes | Cebpb |
| T14044 | 112-119 | Protein | denotes | C/EBP-β |
| T14043 | 55-63 | Protein | denotes | SerpinB2 |
| T14042 | 33-40 | Protein | denotes | C/EBP-β |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T14293 | 1031-1044 | Transcription | denotes | transcription |
| T14292 | 1017-1030 | Positive_regulation | denotes | LPS-inducible |
| T14291 | 892-901 | Negative_regulation | denotes | deficient |
| T14290 | 842-852 | Transcription | denotes | expression |
| T14289 | 871-880 | Negative_regulation | denotes | decreased |
| T14288 | 816-827 | Positive_regulation | denotes | LPS-induced |
| T14287 | 698-705 | Negative_regulation | denotes | knocked |
| T14286 | 683-693 | Gene_expression | denotes | expression |
| T14285 | 485-495 | Transcription | denotes | expression |
| T14284 | 382-390 | Positive_regulation | denotes | increase |
| T14283 | 408-418 | Transcription | denotes | expression |
| T14282 | 514-522 | Positive_regulation | denotes | dampened |
| T14281 | 368-378 | Positive_regulation | denotes | stimulated |
| T14280 | 456-470 | Positive_regulation | denotes | LPS-stimulated |
| T14279 | 352-362 | Transcription | denotes | expression |
| T14278 | 247-254 | Gene_expression | denotes | express |
| T14277 | 316-326 | Negative_regulation | denotes | attenuated |
| T14276 | 297-304 | Negative_regulation | denotes | absence |
| T14275 | 19-29 | Positive_regulation | denotes | importance |
| T14274 | 204-211 | Gene_expression | denotes | express |
| T14273 | 69-79 | Transcription | denotes | expression |
| T14269 | 1059-1067 | Protein | denotes | SerpinB2 |
| T14268 | 966-973 | Protein | denotes | C/EBP-β |
| T14267 | 884-891 | Protein | denotes | C/EBP-β |
| T14266 | 828-836 | Protein | denotes | SerpinB2 |
| T14265 | 675-682 | Protein | denotes | C/EBP-β |
| T14264 | 526-531 | Protein | denotes | Cebpb |
| T14263 | 471-479 | Protein | denotes | SerpinB2 |
| T14262 | 394-402 | Protein | denotes | SerpinB2 |
| T14261 | 280-288 | Protein | denotes | SerpinB2 |
| T14260 | 338-346 | Protein | denotes | SerpinB2 |
| T14259 | 308-315 | Protein | denotes | C/EBP-β |
| T14258 | 223-230 | Protein | denotes | C/EBP-β |
| T14257 | 157-162 | Protein | denotes | Cebpb |
| T14256 | 126-131 | Protein | denotes | Cebpb |
| T14255 | 112-119 | Protein | denotes | C/EBP-β |
| T14254 | 55-63 | Protein | denotes | SerpinB2 |
| T14253 | 33-40 | Protein | denotes | C/EBP-β |
| R10517 | T14253 | T14275 | themeOf | C/EBP-β,importance |
| R10518 | T14254 | T14273 | themeOf | SerpinB2,expression |
| R10519 | T14258 | T14274 | themeOf | C/EBP-β,express |
| R10520 | T14259 | T14276 | themeOf | C/EBP-β,absence |
| R10521 | T14260 | T14279 | themeOf | SerpinB2,expression |
| R10522 | T14261 | T14277 | themeOf | SerpinB2,attenuated |
| R10523 | T14261 | T14279 | themeOf | SerpinB2,expression |
| R10524 | T14261 | T14278 | themeOf | SerpinB2,express |
| R10525 | T14262 | T14283 | themeOf | SerpinB2,expression |
| R10526 | T14263 | T14285 | themeOf | SerpinB2,expression |
| R10527 | T14265 | T14286 | themeOf | C/EBP-β,expression |
| R10528 | T14266 | T14290 | themeOf | SerpinB2,expression |
| R10529 | T14267 | T14291 | themeOf | C/EBP-β,deficient |
| R10530 | T14269 | T14293 | themeOf | SerpinB2,transcription |
| R10533 | T14273 | T14275 | themeOf | expression,importance |
| R10534 | T14279 | T14277 | themeOf | expression,attenuated |
| R10535 | T14279 | T14277 | themeOf | expression,attenuated |
| R10536 | T14283 | T14284 | themeOf | expression,increase |
| R10537 | T14284 | T14281 | themeOf | increase,stimulated |
| R10538 | T14285 | T14280 | themeOf | expression,LPS-stimulated |
| R10539 | T14285 | T14282 | themeOf | expression,dampened |
| R10540 | T14286 | T14287 | themeOf | expression,knocked |
| R10541 | T14290 | T14288 | themeOf | expression,LPS-induced |
| R10542 | T14290 | T14289 | themeOf | expression,decreased |
| R10543 | T14293 | T14292 | themeOf | transcription,LPS-inducible |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T14407 | 204-211 | Gene_expression | denotes | express |
| T14403 | 1059-1067 | Protein | denotes | SerpinB2 |
| T14402 | 966-973 | Protein | denotes | C/EBP-β |
| T14401 | 884-891 | Protein | denotes | C/EBP-β |
| T14400 | 828-836 | Protein | denotes | SerpinB2 |
| T14399 | 675-682 | Protein | denotes | C/EBP-β |
| T14398 | 526-531 | Protein | denotes | Cebpb |
| T14397 | 471-479 | Protein | denotes | SerpinB2 |
| T14396 | 394-402 | Protein | denotes | SerpinB2 |
| T14395 | 280-288 | Protein | denotes | SerpinB2 |
| T14394 | 338-346 | Protein | denotes | SerpinB2 |
| T14393 | 308-315 | Protein | denotes | C/EBP-β |
| T14392 | 223-230 | Protein | denotes | C/EBP-β |
| T14391 | 157-162 | Protein | denotes | Cebpb |
| T14390 | 126-131 | Protein | denotes | Cebpb |
| T14389 | 112-119 | Protein | denotes | C/EBP-β |
| T14388 | 55-63 | Protein | denotes | SerpinB2 |
| T14387 | 33-40 | Protein | denotes | C/EBP-β |
| T14425 | 990-999 | Positive_regulation | denotes | mediating |
| T14424 | 871-880 | Negative_regulation | denotes | decreased |
| T14423 | 816-827 | Positive_regulation | denotes | LPS-induced |
| T14422 | 842-852 | Transcription | denotes | expression |
| T14421 | 892-901 | Negative_regulation | denotes | deficient |
| T14420 | 706-710 | Negative_regulation | denotes | down |
| T14419 | 683-693 | Gene_expression | denotes | expression |
| T14418 | 408-418 | Transcription | denotes | expression |
| T14417 | 382-390 | Positive_regulation | denotes | increase |
| T14416 | 456-470 | Positive_regulation | denotes | LPS-stimulated |
| T14415 | 514-522 | Regulation | denotes | dampened |
| T14414 | 485-495 | Transcription | denotes | expression |
| T14413 | 247-254 | Gene_expression | denotes | express |
| T14412 | 352-362 | Transcription | denotes | expression |
| T14411 | 297-304 | Negative_regulation | denotes | absence |
| T14410 | 316-326 | Negative_regulation | denotes | attenuated |
| T14409 | 69-79 | Transcription | denotes | expression |
| T14408 | 19-29 | Positive_regulation | denotes | importance |
| T14426 | 1031-1044 | Transcription | denotes | transcription |
| R10591 | T14387 | T14408 | themeOf | C/EBP-β,importance |
| R10592 | T14388 | T14409 | themeOf | SerpinB2,expression |
| R10593 | T14392 | T14407 | themeOf | C/EBP-β,express |
| R10594 | T14393 | T14411 | themeOf | C/EBP-β,absence |
| R10595 | T14394 | T14412 | themeOf | SerpinB2,expression |
| R10596 | T14395 | T14413 | themeOf | SerpinB2,express |
| R10597 | T14396 | T14418 | themeOf | SerpinB2,expression |
| R10598 | T14397 | T14414 | themeOf | SerpinB2,expression |
| R10599 | T14398 | T14415 | themeOf | Cebpb,dampened |
| R10600 | T14399 | T14419 | themeOf | C/EBP-β,expression |
| R10601 | T14399 | T14420 | themeOf | C/EBP-β,down |
| R10602 | T14400 | T14422 | themeOf | SerpinB2,expression |
| R10603 | T14401 | T14421 | themeOf | C/EBP-β,deficient |
| R10604 | T14402 | T14425 | causeOf | C/EBP-β,mediating |
| R10605 | T14403 | T14426 | themeOf | SerpinB2,transcription |
| R10610 | T14412 | T14410 | themeOf | expression,attenuated |
| R10611 | T14413 | T14410 | themeOf | express,attenuated |
| R10612 | T14414 | T14416 | themeOf | expression,LPS-stimulated |
| R10613 | T14414 | T14415 | themeOf | expression,dampened |
| R10614 | T14418 | T14417 | themeOf | expression,increase |
| R10615 | T14419 | T14420 | themeOf | expression,down |
| R10616 | T14421 | T14424 | causeOf | deficient,decreased |
| R10617 | T14422 | T14423 | themeOf | expression,LPS-induced |
| R10618 | T14422 | T14424 | themeOf | expression,decreased |
| R10619 | T14426 | T14425 | themeOf | transcription,mediating |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T14359 | 1017-1030 | Positive_regulation | denotes | LPS-inducible |
| T14358 | 990-999 | Positive_regulation | denotes | mediating |
| T14357 | 1031-1044 | Transcription | denotes | transcription |
| T14356 | 816-827 | Positive_regulation | denotes | LPS-induced |
| T14355 | 799-811 | Positive_regulation | denotes | constitutive |
| T14354 | 892-901 | Negative_regulation | denotes | deficient |
| T14353 | 871-880 | Negative_regulation | denotes | decreased |
| T14352 | 842-852 | Transcription | denotes | expression |
| T14351 | 698-705 | Negative_regulation | denotes | knocked |
| T14350 | 706-710 | Negative_regulation | denotes | down |
| T14349 | 683-693 | Gene_expression | denotes | expression |
| T14348 | 368-378 | Positive_regulation | denotes | stimulated |
| T14347 | 456-470 | Positive_regulation | denotes | LPS-stimulated |
| T14346 | 382-390 | Positive_regulation | denotes | increase |
| T14345 | 514-522 | Positive_regulation | denotes | dampened |
| T14344 | 485-495 | Transcription | denotes | expression |
| T14343 | 408-418 | Transcription | denotes | expression |
| T14342 | 327-337 | Positive_regulation | denotes | endogenous |
| T14341 | 316-326 | Negative_regulation | denotes | attenuated |
| T14340 | 352-362 | Transcription | denotes | expression |
| T14339 | 297-304 | Negative_regulation | denotes | absence |
| T14338 | 255-258 | Positive_regulation | denotes | low |
| T14337 | 247-254 | Gene_expression | denotes | express |
| T14336 | 19-29 | Positive_regulation | denotes | importance |
| T14335 | 204-211 | Gene_expression | denotes | express |
| T14334 | 120-124 | Negative_regulation | denotes | null |
| T14333 | 69-79 | Transcription | denotes | expression |
| T14328 | 1059-1067 | Protein | denotes | SerpinB2 |
| T14327 | 966-973 | Protein | denotes | C/EBP-β |
| T14326 | 884-891 | Protein | denotes | C/EBP-β |
| T14325 | 828-836 | Protein | denotes | SerpinB2 |
| T14324 | 675-682 | Protein | denotes | C/EBP-β |
| T14323 | 526-531 | Protein | denotes | Cebpb |
| T14322 | 471-479 | Protein | denotes | SerpinB2 |
| T14321 | 394-402 | Protein | denotes | SerpinB2 |
| T14320 | 280-288 | Protein | denotes | SerpinB2 |
| T14319 | 338-346 | Protein | denotes | SerpinB2 |
| T14318 | 308-315 | Protein | denotes | C/EBP-β |
| T14317 | 223-230 | Protein | denotes | C/EBP-β |
| T14316 | 157-162 | Protein | denotes | Cebpb |
| T14315 | 126-131 | Protein | denotes | Cebpb |
| T14314 | 112-119 | Protein | denotes | C/EBP-β |
| T14313 | 55-63 | Protein | denotes | SerpinB2 |
| T14312 | 33-40 | Protein | denotes | C/EBP-β |
| R10546 | T14312 | T14336 | causeOf | C/EBP-β,importance |
| R10547 | T14313 | T14333 | themeOf | SerpinB2,expression |
| R10548 | T14314 | T14334 | themeOf | C/EBP-β,null |
| R10549 | T14315 | T14334 | themeOf | Cebpb,null |
| R10550 | T14317 | T14335 | themeOf | C/EBP-β,express |
| R10551 | T14318 | T14339 | themeOf | C/EBP-β,absence |
| R10552 | T14319 | T14340 | themeOf | SerpinB2,expression |
| R10553 | T14320 | T14337 | themeOf | SerpinB2,express |
| R10554 | T14321 | T14343 | themeOf | SerpinB2,expression |
| R10555 | T14322 | T14344 | themeOf | SerpinB2,expression |
| R10556 | T14324 | T14349 | themeOf | C/EBP-β,expression |
| R10557 | T14325 | T14352 | themeOf | SerpinB2,expression |
| R10558 | T14326 | T14354 | themeOf | C/EBP-β,deficient |
| R10559 | T14327 | T14358 | causeOf | C/EBP-β,mediating |
| R10560 | T14328 | T14357 | themeOf | SerpinB2,transcription |
| R10564 | T14333 | T14336 | themeOf | expression,importance |
| R10565 | T14337 | T14338 | themeOf | express,low |
| R10566 | T14340 | T14341 | themeOf | expression,attenuated |
| R10567 | T14340 | T14342 | themeOf | expression,endogenous |
| R10568 | T14343 | T14346 | themeOf | expression,increase |
| R10569 | T14344 | T14345 | themeOf | expression,dampened |
| R10570 | T14344 | T14347 | themeOf | expression,LPS-stimulated |
| R10571 | T14346 | T14348 | themeOf | increase,stimulated |
| R10572 | T14349 | T14350 | themeOf | expression,down |
| R10573 | T14349 | T14351 | themeOf | expression,knocked |
| R10574 | T14350 | T14351 | causeOf | down,knocked |
| R10575 | T14351 | T14350 | themeOf | knocked,down |
| R10576 | T14352 | T14353 | themeOf | expression,decreased |
| R10577 | T14352 | T14355 | themeOf | expression,constitutive |
| R10578 | T14352 | T14356 | themeOf | expression,LPS-induced |
| R10579 | T14357 | T14358 | themeOf | transcription,mediating |
| R10580 | T14357 | T14359 | themeOf | transcription,LPS-inducible |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T14532 | 438-441 | Protein | denotes | Fig |
| T14531 | 338-351 | Protein | denotes | SerpinB2 mRNA |
| T14530 | 305-315 | Protein | denotes | of C/EBP-β |
| T14529 | 471-479 | Protein | denotes | SerpinB2 |
| T14527 | 364-367 | Entity | denotes | LPS |
| T14526 | 892-926 | Entity | denotes | deficient inflammatory macrophages |
| T14525 | 269-288 | Protein | denotes | endogenous SerpinB2 |
| T14524 | 212-230 | Protein | denotes | endogenous C/EBP-β |
| T14523 | 788-793 | Protein | denotes | MEFs, |
| T14522 | 30-40 | Protein | denotes | of C/EBP-β |
| T14521 | 526-532 | Protein | denotes | Cebpb− |
| T14520 | 232-246 | Protein | denotes | Wild-type MEFs |
| T14519 | 675-682 | Protein | denotes | C/EBP-β |
| T14518 | 966-973 | Protein | denotes | C/EBP-β |
| T14516 | 816-827 | Entity | denotes | LPS-induced |
| T14515 | 112-136 | Protein | denotes | C/EBP-β-null (Cebpb −/−) |
| T14514 | 338-346 | Protein | denotes | SerpinB2 |
| T14513 | 456-459 | Entity | denotes | LPS |
| T14512 | 928-931 | Protein | denotes | Fig |
| T14511 | 884-891 | Protein | denotes | C/EBP-β |
| T14510 | 828-841 | Protein | denotes | SerpinB2 mRNA |
| T14509 | 44-63 | Protein | denotes | endogenous SerpinB2 |
| T14508 | 141-167 | Protein | denotes | wild-type MEFs (Cebpb+/+), |
| T14507 | 422-436 | Protein | denotes | wild-type MEFs |
| T14506 | 480-484 | Protein | denotes | mRNA |
| T14505 | 64-68 | Protein | denotes | mRNA |
| T14504 | 394-402 | Protein | denotes | SerpinB2 |
| T14503 | 617-665 | Entity | denotes | thioglycollate-elicited inflammatory macrophages |
| T14502 | 535-539 | Protein | denotes | MEFs |
| T14501 | 394-407 | Protein | denotes | SerpinB2 mRNA |
| T14499 | 1059-1067 | Protein | denotes | SerpinB2 |
| T14498 | 1045-1072 | Protein | denotes | of endogenous SerpinB2 mRNA |
| T14497 | 828-836 | Protein | denotes | SerpinB2 |
| T14551 | 64-99 | Gene_expression | denotes | mRNA expression in response to LPS, |
| T14550 | 64-99 | Transcription | denotes | mRNA expression in response to LPS, |
| T14549 | 1000-1072 | Transcription | denotes | constitutive and LPS-inducible transcription of endogenous SerpinB2 mRNA |
| T14548 | 327-362 | Gene_expression | denotes | endogenous SerpinB2 mRNA expression |
| T14547 | 448-532 | Negative_regulation | denotes | whereas LPS-stimulated SerpinB2 mRNA expression was significantly dampened in Cebpb− |
| T14546 | 448-532 | Negative_regulation | denotes | whereas LPS-stimulated SerpinB2 mRNA expression was significantly dampened in Cebpb− |
| T14545 | 391-418 | Gene_expression | denotes | in SerpinB2 mRNA expression |
| T14544 | 675-693 | Gene_expression | denotes | C/EBP-β expression |
| T14543 | 480-495 | Transcription | denotes | mRNA expression |
| T14542 | 480-495 | Gene_expression | denotes | mRNA expression |
| T14541 | 364-436 | Positive_regulation | denotes | LPS stimulated an increase in SerpinB2 mRNA expression in wild-type MEFs |
| T14540 | 379-436 | Positive_regulation | denotes | an increase in SerpinB2 mRNA expression in wild-type MEFs |
| T14539 | 456-479 | Positive_regulation | denotes | LPS-stimulated SerpinB2 |
| T14538 | 816-852 | Gene_expression | denotes | LPS-induced SerpinB2 mRNA expression |
| T14537 | 816-926 | Negative_regulation | denotes | LPS-induced SerpinB2 mRNA expression was significantly decreased in C/EBP-β-deficient inflammatory macrophages |
| T14536 | 986-1072 | Regulation | denotes | for mediating constitutive and LPS-inducible transcription of endogenous SerpinB2 mRNA |
| R10666 | T14498 | T14549 | themeOf | of endogenous SerpinB2 mRNA,constitutive and LPS-inducible transcription of endogenous SerpinB2 mRNA |
| R10669 | T14501 | T14545 | themeOf | SerpinB2 mRNA,in SerpinB2 mRNA expression |
| R10670 | T14505 | T14550 | themeOf | mRNA,"mRNA expression in response to LPS," |
| R10671 | T14505 | T14551 | themeOf | mRNA,"mRNA expression in response to LPS," |
| R10672 | T14506 | T14542 | themeOf | mRNA,mRNA expression |
| R10673 | T14506 | T14543 | themeOf | mRNA,mRNA expression |
| R10674 | T14510 | T14538 | themeOf | SerpinB2 mRNA,LPS-induced SerpinB2 mRNA expression |
| R10675 | T14513 | T14539 | causeOf | LPS,LPS-stimulated SerpinB2 |
| R10676 | T14519 | T14544 | themeOf | C/EBP-β,C/EBP-β expression |
| R10677 | T14527 | T14541 | causeOf | LPS,LPS stimulated an increase in SerpinB2 mRNA expression in wild-type MEFs |
| R10678 | T14529 | T14539 | themeOf | SerpinB2,LPS-stimulated SerpinB2 |
| R10679 | T14531 | T14548 | themeOf | SerpinB2 mRNA,endogenous SerpinB2 mRNA expression |
| R10680 | T14538 | T14537 | themeOf | LPS-induced SerpinB2 mRNA expression,LPS-induced SerpinB2 mRNA expression was significantly decreased in C/EBP-β-deficient inflammatory macrophages |
| R10681 | T14540 | T14541 | themeOf | an increase in SerpinB2 mRNA expression in wild-type MEFs,LPS stimulated an increase in SerpinB2 mRNA expression in wild-type MEFs |
| R10682 | T14542 | T14547 | themeOf | mRNA expression,whereas LPS-stimulated SerpinB2 mRNA expression was significantly dampened in Cebpb− |
| R10683 | T14543 | T14546 | themeOf | mRNA expression,whereas LPS-stimulated SerpinB2 mRNA expression was significantly dampened in Cebpb− |
| R10684 | T14545 | T14540 | themeOf | in SerpinB2 mRNA expression,an increase in SerpinB2 mRNA expression in wild-type MEFs |
| R10685 | T14549 | T14536 | themeOf | constitutive and LPS-inducible transcription of endogenous SerpinB2 mRNA,for mediating constitutive and LPS-inducible transcription of endogenous SerpinB2 mRNA |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T14461 | 990-999 | Positive_regulation | denotes | mediating |
| T14460 | 1031-1044 | Transcription | denotes | transcription |
| T14459 | 1059-1072 | Protein | denotes | SerpinB2 mRNA |
| T14458 | 966-973 | Protein | denotes | C/EBP-β |
| T14457 | 892-901 | Negative_regulation | denotes | deficient |
| T14456 | 871-880 | Negative_regulation | denotes | decreased |
| T14455 | 842-852 | Gene_expression | denotes | expression |
| T14454 | 884-891 | Protein | denotes | C/EBP-β |
| T14453 | 828-841 | Protein | denotes | SerpinB2 mRNA |
| T14452 | 683-693 | Gene_expression | denotes | expression |
| T14451 | 675-682 | Protein | denotes | C/EBP-β |
| T14450 | 382-390 | Positive_regulation | denotes | increase |
| T14449 | 514-522 | Positive_regulation | denotes | dampened |
| T14448 | 485-495 | Gene_expression | denotes | expression |
| T14447 | 408-418 | Gene_expression | denotes | expression |
| T14446 | 526-539 | Protein | denotes | Cebpb−/− MEFs |
| T14445 | 471-484 | Protein | denotes | SerpinB2 mRNA |
| T14444 | 394-407 | Protein | denotes | SerpinB2 mRNA |
| T14443 | 352-362 | Gene_expression | denotes | expression |
| T14442 | 308-351 | Protein | denotes | C/EBP-β attenuated endogenous SerpinB2 mRNA |
| T14441 | 19-29 | Positive_regulation | denotes | importance |
| T14440 | 204-211 | Gene_expression | denotes | express |
| T14439 | 83-91 | Positive_regulation | denotes | response |
| T14438 | 69-79 | Gene_expression | denotes | expression |
| T14437 | 212-230 | Protein | denotes | endogenous C/EBP-β |
| T14436 | 126-131 | Protein | denotes | Cebpb |
| T14435 | 112-124 | Protein | denotes | C/EBP-β-null |
| T14434 | 55-68 | Protein | denotes | SerpinB2 mRNA |
| T14433 | 33-40 | Protein | denotes | C/EBP-β |
| R10626 | T14433 | T14441 | causeOf | C/EBP-β,importance |
| R10627 | T14434 | T14438 | themeOf | SerpinB2 mRNA,expression |
| R10628 | T14437 | T14440 | themeOf | endogenous C/EBP-β,express |
| R10629 | T14438 | T14439 | themeOf | expression,response |
| R10630 | T14438 | T14441 | themeOf | expression,importance |
| R10631 | T14442 | T14443 | themeOf | C/EBP-β attenuated endogenous SerpinB2 mRNA,expression |
| R10632 | T14444 | T14447 | themeOf | SerpinB2 mRNA,expression |
| R10633 | T14445 | T14448 | themeOf | SerpinB2 mRNA,expression |
| R10634 | T14447 | T14450 | themeOf | expression,increase |
| R10635 | T14448 | T14449 | themeOf | expression,dampened |
| R10636 | T14451 | T14452 | themeOf | C/EBP-β,expression |
| R10637 | T14453 | T14455 | themeOf | SerpinB2 mRNA,expression |
| R10638 | T14454 | T14457 | themeOf | C/EBP-β,deficient |
| R10639 | T14455 | T14456 | themeOf | expression,decreased |
| R10640 | T14458 | T14461 | causeOf | C/EBP-β,mediating |
| R10641 | T14459 | T14460 | themeOf | SerpinB2 mRNA,transcription |
| R10642 | T14460 | T14461 | themeOf | transcription,mediating |
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T13898 | 1031-1044 | Transcription | denotes | transcription |
| T13897 | 1021-1030 | Positive_regulation | denotes | inducible |
| T13896 | 977-985 | Positive_regulation | denotes | critical |
| T13895 | 892-901 | Negative_regulation | denotes | deficient |
| T13894 | 871-880 | Negative_regulation | denotes | decreased |
| T13893 | 837-852 | Transcription | denotes | mRNA expression |
| T13892 | 820-827 | Positive_regulation | denotes | induced |
| T13891 | 698-710 | Negative_regulation | denotes | knocked down |
| T13890 | 683-693 | Gene_expression | denotes | expression |
| T13889 | 480-495 | Transcription | denotes | mRNA expression |
| T13888 | 460-470 | Positive_regulation | denotes | stimulated |
| T13887 | 403-418 | Transcription | denotes | mRNA expression |
| T13886 | 382-390 | Positive_regulation | denotes | increase |
| T13885 | 347-362 | Transcription | denotes | mRNA expression |
| T13884 | 316-326 | Negative_regulation | denotes | attenuated |
| T13883 | 247-254 | Gene_expression | denotes | express |
| T13882 | 204-211 | Gene_expression | denotes | express |
| T13881 | 120-124 | Negative_regulation | denotes | null |
| T13880 | 64-79 | Transcription | denotes | mRNA expression |
| T13876 | 1059-1067 | Protein | denotes | SerpinB2 |
| T13875 | 966-973 | Protein | denotes | C/EBP-β |
| T13874 | 884-891 | Protein | denotes | C/EBP-β |
| T13873 | 828-836 | Protein | denotes | SerpinB2 |
| T13872 | 675-682 | Protein | denotes | C/EBP-β |
| T13871 | 526-531 | Protein | denotes | Cebpb |
| T13870 | 471-479 | Protein | denotes | SerpinB2 |
| T13869 | 394-402 | Protein | denotes | SerpinB2 |
| T13868 | 338-346 | Protein | denotes | SerpinB2 |
| T13867 | 308-315 | Protein | denotes | C/EBP-β |
| T13866 | 280-288 | Protein | denotes | SerpinB2 |
| T13865 | 223-230 | Protein | denotes | C/EBP-β |
| T13864 | 157-162 | Protein | denotes | Cebpb |
| T13863 | 126-131 | Protein | denotes | Cebpb |
| T13862 | 112-119 | Protein | denotes | C/EBP-β |
| T13861 | 55-63 | Protein | denotes | SerpinB2 |
| T13860 | 33-40 | Protein | denotes | C/EBP-β |
| R10249 | T13861 | T13880 | themeOf | SerpinB2,mRNA expression |
| R10250 | T13862 | T13881 | themeOf | C/EBP-β,null |
| R10251 | T13865 | T13882 | themeOf | C/EBP-β,express |
| R10252 | T13866 | T13883 | themeOf | SerpinB2,express |
| R10253 | T13867 | T13883 | themeOf | C/EBP-β,express |
| R10254 | T13868 | T13885 | themeOf | SerpinB2,mRNA expression |
| R10255 | T13869 | T13887 | themeOf | SerpinB2,mRNA expression |
| R10256 | T13870 | T13889 | themeOf | SerpinB2,mRNA expression |
| R10257 | T13872 | T13890 | themeOf | C/EBP-β,expression |
| R10258 | T13873 | T13893 | themeOf | SerpinB2,mRNA expression |
| R10259 | T13874 | T13895 | themeOf | C/EBP-β,deficient |
| R10260 | T13875 | T13896 | causeOf | C/EBP-β,critical |
| R10261 | T13876 | T13898 | themeOf | SerpinB2,transcription |
| R10264 | T13885 | T13884 | themeOf | mRNA expression,attenuated |
| R10265 | T13887 | T13886 | themeOf | mRNA expression,increase |
| R10266 | T13889 | T13888 | themeOf | mRNA expression,stimulated |
| R10267 | T13892 | T13894 | themeOf | induced,decreased |
| R10268 | T13893 | T13894 | themeOf | mRNA expression,decreased |
| R10269 | T13893 | T13892 | themeOf | mRNA expression,induced |
| R10270 | T13895 | T13894 | causeOf | deficient,decreased |
| R10271 | T13897 | T13896 | themeOf | inducible,critical |
| R10272 | T13898 | T13897 | themeOf | transcription,inducible |
test3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T13907 | 280-288 | Protein | denotes | SerpinB2 |
| T13959 | 1059-1067 | Protein | denotes | SerpinB2 |
| T13958 | 1031-1044 | Transcription | denotes | transcription |
| T13957 | 1021-1030 | Positive_regulation | denotes | inducible |
| T13956 | 977-985 | Positive_regulation | denotes | critical |
| T13955 | 966-973 | Protein | denotes | C/EBP-β |
| T13954 | 892-901 | Negative_regulation | denotes | deficient |
| T13953 | 884-891 | Protein | denotes | C/EBP-β |
| T13952 | 871-880 | Negative_regulation | denotes | decreased |
| T13951 | 837-852 | Transcription | denotes | mRNA expression |
| T13950 | 828-836 | Protein | denotes | SerpinB2 |
| T13949 | 820-827 | Positive_regulation | denotes | induced |
| T13948 | 698-710 | Negative_regulation | denotes | knocked down |
| T13947 | 683-693 | Gene_expression | denotes | expression |
| T13946 | 675-682 | Protein | denotes | C/EBP-β |
| T13945 | 526-531 | Protein | denotes | Cebpb |
| T13944 | 480-495 | Transcription | denotes | mRNA expression |
| T13943 | 471-479 | Protein | denotes | SerpinB2 |
| T13942 | 460-470 | Positive_regulation | denotes | stimulated |
| T13941 | 403-418 | Transcription | denotes | mRNA expression |
| T13940 | 394-402 | Protein | denotes | SerpinB2 |
| T13939 | 382-390 | Positive_regulation | denotes | increase |
| T13938 | 347-362 | Transcription | denotes | mRNA expression |
| T13937 | 338-346 | Protein | denotes | SerpinB2 |
| T13936 | 316-326 | Negative_regulation | denotes | attenuated |
| T13935 | 308-315 | Protein | denotes | C/EBP-β |
| T13934 | 297-304 | Negative_regulation | denotes | absence |
| T13933 | 280-288 | Protein | denotes | SerpinB2 |
| T13932 | 247-254 | Gene_expression | denotes | express |
| T13931 | 223-230 | Protein | denotes | C/EBP-β |
| T13930 | 204-211 | Gene_expression | denotes | express |
| T13929 | 157-162 | Protein | denotes | Cebpb |
| T13928 | 126-131 | Protein | denotes | Cebpb |
| T13927 | 120-124 | Negative_regulation | denotes | null |
| T13926 | 112-119 | Protein | denotes | C/EBP-β |
| T13925 | 80-94 | Positive_regulation | denotes | in response to |
| T13924 | 64-79 | Transcription | denotes | mRNA expression |
| T13923 | 55-63 | Protein | denotes | SerpinB2 |
| T13922 | 33-40 | Protein | denotes | C/EBP-β |
| T13917 | 1059-1067 | Protein | denotes | SerpinB2 |
| T13916 | 966-973 | Protein | denotes | C/EBP-β |
| T13915 | 884-891 | Protein | denotes | C/EBP-β |
| T13914 | 828-836 | Protein | denotes | SerpinB2 |
| T13913 | 675-682 | Protein | denotes | C/EBP-β |
| T13912 | 526-531 | Protein | denotes | Cebpb |
| T13911 | 471-479 | Protein | denotes | SerpinB2 |
| T13910 | 394-402 | Protein | denotes | SerpinB2 |
| T13909 | 338-346 | Protein | denotes | SerpinB2 |
| T13908 | 308-315 | Protein | denotes | C/EBP-β |
| T13906 | 223-230 | Protein | denotes | C/EBP-β |
| T13905 | 157-162 | Protein | denotes | Cebpb |
| T13904 | 126-131 | Protein | denotes | Cebpb |
| T13903 | 112-119 | Protein | denotes | C/EBP-β |
| T13902 | 55-63 | Protein | denotes | SerpinB2 |
| T13901 | 33-40 | Protein | denotes | C/EBP-β |
| R10275 | T13923 | T13924 | themeOf | SerpinB2,mRNA expression |
| R10276 | T13924 | T13925 | themeOf | mRNA expression,in response to |
| R10277 | T13926 | T13927 | themeOf | C/EBP-β,null |
| R10278 | T13927 | T13925 | causeOf | null,in response to |
| R10279 | T13931 | T13930 | themeOf | C/EBP-β,express |
| R10280 | T13933 | T13932 | themeOf | SerpinB2,express |
| R10281 | T13937 | T13938 | themeOf | SerpinB2,mRNA expression |
| R10282 | T13938 | T13936 | themeOf | mRNA expression,attenuated |
| R10283 | T13940 | T13941 | themeOf | SerpinB2,mRNA expression |
| R10284 | T13941 | T13939 | themeOf | mRNA expression,increase |
| R10285 | T13943 | T13944 | themeOf | SerpinB2,mRNA expression |
| R10286 | T13944 | T13942 | themeOf | mRNA expression,stimulated |
| R10287 | T13946 | T13947 | themeOf | C/EBP-β,expression |
| R10288 | T13947 | T13948 | themeOf | expression,knocked down |
| R10289 | T13949 | T13952 | themeOf | induced,decreased |
| R10290 | T13950 | T13951 | themeOf | SerpinB2,mRNA expression |
| R10291 | T13951 | T13952 | themeOf | mRNA expression,decreased |
| R10292 | T13951 | T13949 | themeOf | mRNA expression,induced |
| R10293 | T13953 | T13954 | themeOf | C/EBP-β,deficient |
| R10294 | T13954 | T13952 | causeOf | deficient,decreased |
| R10295 | T13955 | T13957 | causeOf | C/EBP-β,inducible |
| R10296 | T13955 | T13956 | causeOf | C/EBP-β,critical |
| R10297 | T13958 | T13957 | themeOf | transcription,inducible |
| R10298 | T13959 | T13958 | themeOf | SerpinB2,transcription |