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PMC:3589482 / 30816-30936 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T14570 109-120 NNPS denotes Macrophages
T14569 101-108 JJ denotes Primary
T14568 88-100 NNP denotes Inflammatory
T14567 84-87 CC denotes and
T14566 79-83 NNP denotes MEFs
T14565 76-78 IN denotes in
T14564 65-75 NNP denotes Expression
T14563 60-64 NNP denotes mRNA
T14562 51-59 NNP denotes SerpinB2
T14561 39-50 JJ denotes LPS-induced
T14560 35-38 CC denotes and
T14559 22-34 NNP denotes Constitutive
T14558 17-21 DT denotes both
T14557 8-16 NNPS denotes Mediates
T14556 6-7 SYM denotes β
T14555 5-6 : denotes -
T14554 0-5 SYM denotes C/EBP
R10686 T14554 T14570 punct C/EBP,Macrophages
R10687 T14555 T14570 punct -,Macrophages
R10688 T14556 T14570 punct β,Macrophages
R10689 T14557 T14559 compound Mediates,Constitutive
R10690 T14558 T14559 preconj both,Constitutive
R10691 T14559 T14570 nmod Constitutive,Macrophages
R10692 T14560 T14559 cc and,Constitutive
R10693 T14561 T14564 amod LPS-induced,Expression
R10694 T14562 T14564 compound SerpinB2,Expression
R10695 T14563 T14564 compound mRNA,Expression
R10696 T14564 T14559 conj Expression,Constitutive
R10697 T14565 T14564 prep in,Expression
R10698 T14566 T14565 pobj MEFs,in
R10699 T14567 T14566 cc and,MEFs
R10700 T14568 T14566 conj Inflammatory,MEFs
R10701 T14569 T14570 compound Primary,Macrophages

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T14059 0-7 NN denotes C/EBP-β
T14073 109-120 NN denotes Macrophages
T14072 101-108 JJ denotes Primary
T14071 88-100 JJ denotes Inflammatory
T14070 84-87 CC denotes and
T14069 79-83 NN denotes MEFs
T14068 76-78 IN denotes in
T14067 65-75 NN denotes Expression
T14066 60-64 NN denotes mRNA
T14065 51-59 NN denotes SerpinB2
T14064 39-50 JJ denotes LPS-induced
T14063 35-38 CC denotes and
T14062 22-34 JJ denotes Constitutive
T14061 17-21 CC denotes both
T14060 8-16 NN denotes Mediates
R10339 T14060 T14059 arg1Of Mediates,C/EBP-β
R10340 T14062 T14063 arg1Of Constitutive,and
R10341 T14064 T14063 arg2Of LPS-induced,and
R10342 T14067 T14060 arg1Of Expression,Mediates
R10343 T14067 T14061 arg1Of Expression,both
R10344 T14067 T14062 arg1Of Expression,Constitutive
R10345 T14067 T14064 arg1Of Expression,LPS-induced
R10346 T14067 T14065 arg1Of Expression,SerpinB2
R10347 T14067 T14066 arg1Of Expression,mRNA
R10348 T14067 T14068 arg1Of Expression,in
R10349 T14069 T14070 arg1Of MEFs,and
R10350 T14070 T14068 arg2Of and,in
R10351 T14073 T14070 arg2Of Macrophages,and
R10352 T14073 T14071 arg1Of Macrophages,Inflammatory
R10353 T14073 T14072 arg1Of Macrophages,Primary

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T14019 51-59 Protein denotes SerpinB2
T14018 0-7 Protein denotes C/EBP-β

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T14294 0-7 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T14302 51-59 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

sentences

Id Subject Object Predicate Lexical cue
T13960 0-120 Sentence denotes C/EBP-β Mediates both Constitutive and LPS-induced SerpinB2 mRNA Expression in MEFs and Inflammatory Primary Macrophages
T189 0-120 Sentence denotes C/EBP-β Mediates both Constitutive and LPS-induced SerpinB2 mRNA Expression in MEFs and Inflammatory Primary Macrophages

simple1

Id Subject Object Predicate Lexical cue
T14041 51-59 Protein denotes SerpinB2
T14040 0-7 Protein denotes C/EBP-β

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14272 8-16 Positive_regulation denotes Mediates
T14271 39-50 Positive_regulation denotes LPS-induced
T14270 65-75 Transcription denotes Expression
T14252 51-59 Protein denotes SerpinB2
T14251 0-7 Protein denotes C/EBP-β
R10515 T14252 T14271 themeOf SerpinB2,LPS-induced
R10516 T14252 T14270 themeOf SerpinB2,Expression
R10531 T14270 T14272 themeOf Expression,Mediates
R10532 T14270 T14271 themeOf Expression,LPS-induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T14406 65-75 Transcription denotes Expression
T14405 8-16 Positive_regulation denotes Mediates
T14404 39-50 Positive_regulation denotes LPS-induced
T14386 51-59 Protein denotes SerpinB2
T14385 0-7 Protein denotes C/EBP-β
R10587 T14385 T14405 causeOf C/EBP-β,Mediates
R10588 T14385 T14405 causeOf C/EBP-β,Mediates
R10589 T14386 T14404 themeOf SerpinB2,LPS-induced
R10590 T14386 T14406 themeOf SerpinB2,Expression
R10606 T14404 T14405 themeOf LPS-induced,Mediates
R10607 T14404 T14405 themeOf LPS-induced,Mediates
R10608 T14406 T14405 themeOf Expression,Mediates
R10609 T14406 T14404 themeOf Expression,LPS-induced
R10586 T14385 T14405 causeOf C/EBP-β,Mediates

DLUT931

Id Subject Object Predicate Lexical cue
T14332 39-50 Positive_regulation denotes LPS-induced
T14331 22-34 Positive_regulation denotes Constitutive
T14330 8-16 Positive_regulation denotes Mediates
T14329 65-75 Transcription denotes Expression
T14311 51-59 Protein denotes SerpinB2
T14310 0-7 Protein denotes C/EBP-β
R10545 T14311 T14329 themeOf SerpinB2,Expression
R10561 T14329 T14330 themeOf Expression,Mediates
R10562 T14329 T14331 themeOf Expression,Constitutive
R10563 T14329 T14332 themeOf Expression,LPS-induced
R10544 T14310 T14330 causeOf C/EBP-β,Mediates

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T14528 88-120 Entity denotes Inflammatory Primary Macrophages
T14517 0-7 Protein denotes C/EBP-β
T14500 60-64 Protein denotes mRNA
T14553 60-120 Gene_expression denotes mRNA Expression in MEFs and Inflammatory Primary Macrophages
T14552 60-120 Transcription denotes mRNA Expression in MEFs and Inflammatory Primary Macrophages
T14535 39-59 Protein denotes LPS-induced SerpinB2
T14534 39-50 Entity denotes LPS-induced
T14533 79-83 Protein denotes MEFs
R10667 T14500 T14552 themeOf mRNA,mRNA Expression in MEFs and Inflammatory Primary Macrophages
R10668 T14500 T14553 themeOf mRNA,mRNA Expression in MEFs and Inflammatory Primary Macrophages

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T14432 8-16 Positive_regulation denotes Mediates
T14431 39-50 Positive_regulation denotes LPS-induced
T14430 8-16 Positive_regulation denotes Mediates
T14429 65-75 Gene_expression denotes Expression
T14428 51-64 Protein denotes SerpinB2 mRNA
T14427 0-7 Protein denotes C/EBP-β
R10620 T14427 T14430 causeOf C/EBP-β,Mediates
R10621 T14427 T14432 causeOf C/EBP-β,Mediates
R10622 T14428 T14429 themeOf SerpinB2 mRNA,Expression
R10623 T14429 T14430 themeOf Expression,Mediates
R10624 T14429 T14431 themeOf Expression,LPS-induced
R10625 T14431 T14432 themeOf LPS-induced,Mediates

testone

Id Subject Object Predicate Lexical cue
T13879 60-75 Transcription denotes mRNA Expression
T13878 43-50 Positive_regulation denotes induced
T13877 8-16 Positive_regulation denotes Mediates
T13859 51-59 Protein denotes SerpinB2
T13858 0-7 Protein denotes C/EBP-β
R10247 T13858 T13877 causeOf C/EBP-β,Mediates
R10248 T13859 T13879 themeOf SerpinB2,mRNA Expression
R10262 T13878 T13877 themeOf induced,Mediates
R10263 T13879 T13878 themeOf mRNA Expression,induced

test3

Id Subject Object Predicate Lexical cue
T13921 60-75 Transcription denotes mRNA Expression
T13920 51-59 Protein denotes SerpinB2
T13919 43-50 Positive_regulation denotes induced
T13918 0-7 Protein denotes C/EBP-β
T13900 51-59 Protein denotes SerpinB2
T13899 0-7 Protein denotes C/EBP-β
R10273 T13920 T13921 themeOf SerpinB2,mRNA Expression
R10274 T13921 T13919 themeOf mRNA Expression,induced