PMC:3589482 / 30124-30411
Annnotations
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T13751","span":{"begin":286,"end":287},"obj":"."},{"id":"T13750","span":{"begin":285,"end":286},"obj":"NN"},{"id":"T13749","span":{"begin":284,"end":285},"obj":":"},{"id":"T13748","span":{"begin":279,"end":284},"obj":"NNP"},{"id":"T13747","span":{"begin":275,"end":278},"obj":"CC"},{"id":"T13746","span":{"begin":273,"end":274},"obj":"NN"},{"id":"T13745","span":{"begin":272,"end":273},"obj":":"},{"id":"T13744","span":{"begin":267,"end":272},"obj":"NNP"},{"id":"T13743","span":{"begin":265,"end":266},"obj":","},{"id":"T13742","span":{"begin":264,"end":265},"obj":"NN"},{"id":"T13741","span":{"begin":263,"end":264},"obj":":"},{"id":"T13740","span":{"begin":258,"end":263},"obj":"NNP"},{"id":"T13739","span":{"begin":256,"end":257},"obj":","},{"id":"T13738","span":{"begin":255,"end":256},"obj":"NN"},{"id":"T13737","span":{"begin":254,"end":255},"obj":":"},{"id":"T13736","span":{"begin":249,"end":254},"obj":"NNP"},{"id":"T13735","span":{"begin":245,"end":248},"obj":"IN"},{"id":"T13734","span":{"begin":236,"end":244},"obj":"JJ"},{"id":"T13733","span":{"begin":225,"end":235},"obj":"NNS"},{"id":"T13732","span":{"begin":220,"end":224},"obj":"IN"},{"id":"T13731","span":{"begin":210,"end":219},"obj":"NNS"},{"id":"T13730","span":{"begin":195,"end":209},"obj":"JJ"},{"id":"T13729","span":{"begin":191,"end":194},"obj":"DT"},{"id":"T13728","span":{"begin":180,"end":190},"obj":"VBG"},{"id":"T13727","span":{"begin":174,"end":179},"obj":"IN"},{"id":"T13726","span":{"begin":164,"end":173},"obj":"VBN"},{"id":"T13725","span":{"begin":160,"end":163},"obj":"VBD"},{"id":"T13724","span":{"begin":155,"end":159},"obj":"NNP"},{"id":"T13723","span":{"begin":153,"end":154},"obj":","},{"id":"T13722","span":{"begin":146,"end":153},"obj":"NN"},{"id":"T13721","span":{"begin":132,"end":145},"obj":"JJ"},{"id":"T13720","span":{"begin":128,"end":131},"obj":"DT"},{"id":"T13719","span":{"begin":125,"end":127},"obj":"IN"},{"id":"T13718","span":{"begin":112,"end":124},"obj":"RB"},{"id":"T13717","span":{"begin":108,"end":111},"obj":"CC"},{"id":"T13716","span":{"begin":106,"end":107},"obj":","},{"id":"T13715","span":{"begin":97,"end":106},"obj":"NNS"},{"id":"T13714","span":{"begin":82,"end":96},"obj":"NN"},{"id":"T13713","span":{"begin":72,"end":81},"obj":"JJ"},{"id":"T13712","span":{"begin":68,"end":71},"obj":"DT"},{"id":"T13711","span":{"begin":65,"end":67},"obj":"IN"},{"id":"T13710","span":{"begin":55,"end":64},"obj":"NN"},{"id":"T13709","span":{"begin":51,"end":54},"obj":"DT"},{"id":"T13708","span":{"begin":48,"end":50},"obj":"IN"},{"id":"T13707","span":{"begin":39,"end":47},"obj":"VBN"},{"id":"T13706","span":{"begin":34,"end":38},"obj":"VBD"},{"id":"T13705","span":{"begin":25,"end":33},"obj":"NNS"},{"id":"T13704","span":{"begin":19,"end":24},"obj":"NNP"},{"id":"T13703","span":{"begin":13,"end":18},"obj":"WDT"},{"id":"T13702","span":{"begin":3,"end":12},"obj":"VB"},{"id":"T13701","span":{"begin":0,"end":2},"obj":"TO"}],"relations":[{"id":"R10121","pred":"aux","subj":"T13701","obj":"T13702"},{"id":"R10122","pred":"advcl","subj":"T13702","obj":"T13707"},{"id":"R10123","pred":"det","subj":"T13703","obj":"T13705"},{"id":"R10124","pred":"compound","subj":"T13704","obj":"T13705"},{"id":"R10125","pred":"nsubjpass","subj":"T13705","obj":"T13707"},{"id":"R10126","pred":"auxpass","subj":"T13706","obj":"T13707"},{"id":"R10127","pred":"ROOT","subj":"T13707","obj":"T13707"},{"id":"R10128","pred":"prep","subj":"T13708","obj":"T13707"},{"id":"R10129","pred":"det","subj":"T13709","obj":"T13710"},{"id":"R10130","pred":"pobj","subj":"T13710","obj":"T13708"},{"id":"R10131","pred":"prep","subj":"T13711","obj":"T13710"},{"id":"R10132","pred":"det","subj":"T13712","obj":"T13715"},{"id":"R10133","pred":"amod","subj":"T13713","obj":"T13715"},{"id":"R10134","pred":"compound","subj":"T13714","obj":"T13715"},{"id":"R10135","pred":"pobj","subj":"T13715","obj":"T13711"},{"id":"R10136","pred":"punct","subj":"T13716","obj":"T13707"},{"id":"R10137","pred":"cc","subj":"T13717","obj":"T13707"},{"id":"R10138","pred":"advmod","subj":"T13718","obj":"T13719"},{"id":"R10139","pred":"prep","subj":"T13719","obj":"T13726"},{"id":"R10140","pred":"det","subj":"T13720","obj":"T13722"},{"id":"R10141","pred":"compound","subj":"T13721","obj":"T13722"},{"id":"R10142","pred":"pobj","subj":"T13722","obj":"T13719"},{"id":"R10143","pred":"punct","subj":"T13723","obj":"T13726"},{"id":"R10144","pred":"nsubjpass","subj":"T13724","obj":"T13726"},{"id":"R10145","pred":"auxpass","subj":"T13725","obj":"T13726"},{"id":"R10146","pred":"conj","subj":"T13726","obj":"T13707"},{"id":"R10147","pred":"prep","subj":"T13727","obj":"T13726"},{"id":"R10148","pred":"pcomp","subj":"T13728","obj":"T13727"},{"id":"R10149","pred":"det","subj":"T13729","obj":"T13731"},{"id":"R10150","pred":"amod","subj":"T13730","obj":"T13731"},{"id":"R10151","pred":"dobj","subj":"T13731","obj":"T13728"},{"id":"R10152","pred":"prep","subj":"T13732","obj":"T13731"},{"id":"R10153","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determine which C/EBP proteins were involved in the formation of the different nucleo-protein complexes, and particularly of the LPS-inducible complex, EMSA was performed after incubating the nucleo-protein complexes with antibodies specific for C/EBP-α, C/EBP-β, C/EBP-δ and C/EBP-ε."}
pmc-enju-pas
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determine which C/EBP proteins were involved in the formation of the different nucleo-protein complexes, and particularly of the LPS-inducible complex, EMSA was performed after incubating the nucleo-protein complexes with antibodies specific for C/EBP-α, C/EBP-β, C/EBP-δ and C/EBP-ε."}
bionlp-st-ge-2016-coref
{"project":"bionlp-st-ge-2016-coref","denotations":[{"id":"T13185","span":{"begin":279,"end":286},"obj":"Antecedent"},{"id":"T13184","span":{"begin":267,"end":274},"obj":"Antecedent"},{"id":"T13183","span":{"begin":258,"end":265},"obj":"Antecedent"},{"id":"T13182","span":{"begin":249,"end":256},"obj":"Antecedent"}],"namespaces":[{"prefix":"_base","uri":"https://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"To determine which C/EBP proteins were involved in the formation of the different nucleo-protein complexes, and particularly of the LPS-inducible complex, EMSA was performed after incubating the nucleo-protein complexes with antibodies specific for C/EBP-α, C/EBP-β, C/EBP-δ and C/EBP-ε."}
bionlp-st-ge-2016-test-proteins
{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T13192","span":{"begin":249,"end":256},"obj":"Protein"},{"id":"T13195","span":{"begin":279,"end":286},"obj":"Protein"},{"id":"T13194","span":{"begin":267,"end":274},"obj":"Protein"},{"id":"T13193","span":{"begin":258,"end":265},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"To determine which C/EBP proteins were involved in the formation of the different nucleo-protein complexes, and particularly of the LPS-inducible complex, EMSA was performed after incubating the nucleo-protein complexes with antibodies specific for C/EBP-α, C/EBP-β, C/EBP-δ and C/EBP-ε."}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T13468","span":{"begin":258,"end":265},"obj":"http://www.uniprot.org/uniprot/P28033"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"To determine which C/EBP proteins were involved in the formation of the different nucleo-protein complexes, and particularly of the LPS-inducible complex, EMSA was performed after incubating the nucleo-protein complexes with antibodies specific for C/EBP-α, C/EBP-β, C/EBP-δ and C/EBP-ε."}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T13207","span":{"begin":55,"end":64},"obj":"http://purl.obolibrary.org/obo/GO_0009058"}],"text":"To determine which C/EBP proteins were involved in the formation of the different nucleo-protein complexes, and particularly of the LPS-inducible complex, EMSA was performed after incubating the nucleo-protein complexes with antibodies specific for C/EBP-α, C/EBP-β, C/EBP-δ and C/EBP-ε."}
GO-MF
{"project":"GO-MF","denotations":[{"id":"T13216","span":{"begin":225,"end":235},"obj":"http://purl.obolibrary.org/obo/GO_0003823"}],"text":"To determine which C/EBP proteins were involved in the formation of the different nucleo-protein complexes, and particularly of the LPS-inducible complex, EMSA was performed after incubating the nucleo-protein complexes with antibodies specific for C/EBP-α, C/EBP-β, C/EBP-δ and C/EBP-ε."}
GO-CC
{"project":"GO-CC","denotations":[{"id":"T13226","span":{"begin":225,"end":235},"obj":"http://purl.obolibrary.org/obo/GO_0042571"},{"id":"T13224","span":{"begin":225,"end":235},"obj":"http://purl.obolibrary.org/obo/GO_0019815"},{"id":"T13223","span":{"begin":202,"end":219},"obj":"http://purl.obolibrary.org/obo/GO_0043234"},{"id":"T13222","span":{"begin":89,"end":106},"obj":"http://purl.obolibrary.org/obo/GO_0043234"}],"text":"To determine which C/EBP proteins were involved in the formation of the different nucleo-protein complexes, and particularly of the LPS-inducible complex, EMSA was performed after incubating the nucleo-protein complexes with antibodies specific for C/EBP-α, C/EBP-β, C/EBP-δ and C/EBP-ε."}
sentences
{"project":"sentences","denotations":[{"id":"T13145","span":{"begin":0,"end":287},"obj":"Sentence"},{"id":"T185","span":{"begin":0,"end":287},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"To determine which C/EBP proteins were involved in the formation of the different nucleo-protein complexes, and particularly of the LPS-inducible complex, EMSA was performed after incubating the nucleo-protein complexes with antibodies specific for C/EBP-α, C/EBP-β, C/EBP-δ and C/EBP-ε."}
simple1
{"project":"simple1","denotations":[{"id":"T13239","span":{"begin":279,"end":286},"obj":"Protein"},{"id":"T13238","span":{"begin":267,"end":274},"obj":"Protein"},{"id":"T13237","span":{"begin":258,"end":265},"obj":"Protein"},{"id":"T13236","span":{"begin":249,"end":256},"obj":"Protein"}],"text":"To determine which C/EBP proteins were involved in the formation of the different nucleo-protein complexes, and particularly of the LPS-inducible complex, EMSA was performed after incubating the nucleo-protein complexes with antibodies specific for C/EBP-α, C/EBP-β, C/EBP-δ and C/EBP-ε."}
BioNLP16_DUT
{"project":"BioNLP16_DUT","denotations":[{"id":"T13461","span":{"begin":267,"end":274},"obj":"Protein"},{"id":"T13460","span":{"begin":258,"end":265},"obj":"Protein"},{"id":"T13459","span":{"begin":249,"end":256},"obj":"Protein"},{"id":"T13458","span":{"begin":279,"end":286},"obj":"Protein"}],"text":"To determine which C/EBP proteins were involved in the formation of the different nucleo-protein complexes, and particularly of the LPS-inducible complex, EMSA was performed after incubating the nucleo-protein complexes with antibodies specific for C/EBP-α, C/EBP-β, C/EBP-δ and C/EBP-ε."}
BioNLP16_Messiy
{"project":"BioNLP16_Messiy","denotations":[{"id":"T13506","span":{"begin":267,"end":274},"obj":"Protein"},{"id":"T13505","span":{"begin":258,"end":265},"obj":"Protein"},{"id":"T13504","span":{"begin":249,"end":256},"obj":"Protein"},{"id":"T13503","span":{"begin":279,"end":286},"obj":"Protein"}],"text":"To determine which C/EBP proteins were involved in the formation of the different nucleo-protein complexes, and particularly of the LPS-inducible complex, EMSA was performed after incubating the nucleo-protein complexes with antibodies specific for C/EBP-α, C/EBP-β, C/EBP-δ and C/EBP-ε."}
DLUT931
{"project":"DLUT931","denotations":[{"id":"T13481","span":{"begin":267,"end":274},"obj":"Protein"},{"id":"T13480","span":{"begin":258,"end":265},"obj":"Protein"},{"id":"T13479","span":{"begin":249,"end":256},"obj":"Protein"},{"id":"T13478","span":{"begin":279,"end":286},"obj":"Protein"}],"text":"To determine which C/EBP proteins were involved in the formation of the different nucleo-protein complexes, and particularly of the LPS-inducible complex, EMSA was performed after incubating the nucleo-protein complexes with antibodies specific for C/EBP-α, C/EBP-β, C/EBP-δ and C/EBP-ε."}
bionlp-st-ge-2016-test-ihmc
{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T13592","span":{"begin":279,"end":286},"obj":"Protein"},{"id":"T13589","span":{"begin":267,"end":274},"obj":"Protein"},{"id":"T13588","span":{"begin":249,"end":256},"obj":"Protein"},{"id":"T13583","span":{"begin":19,"end":24},"obj":"Protein"},{"id":"T13582","span":{"begin":191,"end":219},"obj":"Protein"},{"id":"T13578","span":{"begin":128,"end":154},"obj":"Entity"},{"id":"T13571","span":{"begin":19,"end":33},"obj":"Protein"},{"id":"T13569","span":{"begin":65,"end":106},"obj":"Entity"},{"id":"T13567","span":{"begin":191,"end":219},"obj":"Entity"},{"id":"T13562","span":{"begin":225,"end":235},"obj":"Entity"},{"id":"T13559","span":{"begin":65,"end":106},"obj":"Protein"},{"id":"T13558","span":{"begin":258,"end":265},"obj":"Protein"}],"text":"To determine which C/EBP proteins were involved in the formation of the different nucleo-protein complexes, and particularly of the LPS-inducible complex, EMSA was performed after incubating the nucleo-protein complexes with antibodies specific for C/EBP-α, C/EBP-β, C/EBP-δ and C/EBP-ε."}
bionlp-st-ge-2016-test-tees
{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T13529","span":{"begin":279,"end":286},"obj":"Protein"},{"id":"T13528","span":{"begin":258,"end":274},"obj":"Protein"},{"id":"T13527","span":{"begin":249,"end":256},"obj":"Protein"},{"id":"T13526","span":{"begin":19,"end":33},"obj":"Protein"}],"text":"To determine which C/EBP proteins were involved in the formation of the different nucleo-protein complexes, and particularly of the LPS-inducible complex, EMSA was performed after incubating the nucleo-protein complexes with antibodies specific for C/EBP-α, C/EBP-β, C/EBP-δ and C/EBP-ε."}
testone
{"project":"testone","denotations":[{"id":"T13114","span":{"begin":39,"end":47},"obj":"Regulation"},{"id":"T13107","span":{"begin":279,"end":286},"obj":"Protein"},{"id":"T13106","span":{"begin":267,"end":274},"obj":"Protein"},{"id":"T13105","span":{"begin":258,"end":265},"obj":"Protein"},{"id":"T13104","span":{"begin":249,"end":256},"obj":"Protein"}],"text":"To determine which C/EBP proteins were involved in the formation of the different nucleo-protein complexes, and particularly of the LPS-inducible complex, EMSA was performed after incubating the nucleo-protein complexes with antibodies specific for C/EBP-α, C/EBP-β, C/EBP-δ and C/EBP-ε."}
test3
{"project":"test3","denotations":[{"id":"T13138","span":{"begin":279,"end":286},"obj":"Protein"},{"id":"T13137","span":{"begin":267,"end":274},"obj":"Protein"},{"id":"T13136","span":{"begin":258,"end":265},"obj":"Protein"},{"id":"T13135","span":{"begin":249,"end":256},"obj":"Protein"},{"id":"T13124","span":{"begin":279,"end":286},"obj":"Protein"},{"id":"T13123","span":{"begin":267,"end":274},"obj":"Protein"},{"id":"T13122","span":{"begin":258,"end":265},"obj":"Protein"},{"id":"T13121","span":{"begin":249,"end":256},"obj":"Protein"}],"text":"To determine which C/EBP proteins were involved in the formation of the different nucleo-protein complexes, and particularly of the LPS-inducible complex, EMSA was performed after incubating the nucleo-protein complexes with antibodies specific for C/EBP-α, C/EBP-β, C/EBP-δ and C/EBP-ε."}