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PMC:3589482 / 26414-27165 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T12297 404-405 CD denotes −
T12296 401-403 IN denotes at
T12295 397-400 NNP denotes CRE
T12294 393-396 DT denotes the
T12293 390-392 IN denotes of
T12292 381-389 NN denotes mutation
T12291 379-380 , denotes ,
T12290 377-379 NNP denotes 4B
T12289 372-376 NNP denotes Fig.
T12288 369-371 IN denotes in
T12287 363-368 VBN denotes shown
T12286 360-362 IN denotes As
T12285 358-359 . denotes .
T12284 350-358 NN denotes promoter
T12283 341-349 NNP denotes SerpinB2
T12282 334-340 NN denotes murine
T12281 330-333 DT denotes the
T12280 327-329 IN denotes of
T12279 318-326 NN denotes response
T12278 314-317 NNP denotes LPS
T12277 310-313 DT denotes the
T12276 307-309 IN denotes in
T12275 302-306 NN denotes role
T12274 300-301 DT denotes a
T12273 293-299 VBD denotes played
T12272 288-292 PRP denotes they
T12271 280-287 IN denotes whether
T12270 268-279 VB denotes investigate
T12269 265-267 TO denotes to
T12268 252-264 NN denotes substitution
T12267 241-251 NN denotes nucleotide
T12266 238-240 IN denotes by
T12265 230-237 VBN denotes mutated
T12264 225-229 RB denotes also
T12263 220-224 VBD denotes were
T12262 214-219 NNS denotes sites
T12261 208-213 DT denotes these
T12260 206-207 , denotes ,
T12259 205-206 NNP denotes ]
T12258 203-205 CD denotes 37
T12257 202-203 NNP denotes [
T12256 193-201 NN denotes promoter
T12255 184-192 NNP denotes SERPINB2
T12254 178-183 JJ denotes human
T12253 174-177 DT denotes the
T12252 171-173 IN denotes of
T12251 152-170 NN denotes PMA-responsiveness
T12250 148-151 DT denotes the
T12249 145-147 IN denotes in
T12248 133-144 NN denotes involvement
T12247 120-132 VBN denotes demonstrated
T12246 114-119 PRP$ denotes their
T12245 110-113 CC denotes and
T12244 101-109 NN denotes promoter
T12243 92-100 NNP denotes SerpinB2
T12242 85-91 NN denotes murine
T12241 81-84 DT denotes the
T12240 78-80 IN denotes in
T12239 72-77 NNS denotes sites
T12238 67-71 JJ denotes AP-1
T12237 63-66 CD denotes two
T12236 59-62 CC denotes and
T12235 55-58 NNP denotes CRE
T12234 51-54 DT denotes the
T12233 48-50 IN denotes of
T12232 39-47 NN denotes position
T12231 35-38 CC denotes and
T12230 26-34 NN denotes sequence
T12229 16-25 JJ denotes conserved
T12228 12-15 DT denotes the
T12227 0-11 VBG denotes Considering
T12363 750-751 . denotes .
T12362 742-750 NN denotes promoter
T12361 733-741 JJ denotes proximal
T12360 724-732 NNP denotes SerpinB2
T12359 720-723 DT denotes the
T12358 715-719 IN denotes from
T12357 701-714 NN denotes transcription
T12356 687-700 JJ denotes LPS-inducible
T12355 683-686 IN denotes for
T12354 674-682 JJ denotes critical
T12353 670-673 VBP denotes are
T12352 661-669 NNS denotes elements
T12351 650-660 JJ denotes cis-acting
T12350 645-649 JJ denotes AP-1
T12349 640-644 DT denotes both
T12348 636-639 CC denotes and
T12347 632-635 NNP denotes CRE
T12346 628-631 DT denotes the
T12345 625-627 IN denotes as
T12344 620-624 RB denotes well
T12343 617-619 RB denotes as
T12342 615-616 , denotes ,
T12341 608-615 NN denotes element
T12340 602-607 NNP denotes C/EBP
T12339 598-601 DT denotes the
T12338 593-597 IN denotes that
T12337 588-592 VBP denotes show
T12336 583-587 NNS denotes data
T12335 577-582 DT denotes These
T12334 575-576 . denotes .
T12333 567-575 NN denotes promoter
T12332 558-566 NNP denotes SerpinB2
T12331 551-557 NN denotes murine
T12330 547-550 DT denotes the
T12329 542-546 IN denotes from
T12328 533-541 NN denotes activity
T12327 522-532 NN denotes luciferase
T12326 508-521 JJ denotes LPS-inducible
T12325 500-507 VBN denotes reduced
T12324 486-499 RB denotes significantly
T12323 483-485 CC denotes or
T12322 472-482 RB denotes completely
T12321 470-471 , denotes ,
T12320 468-470 CD denotes 88
T12319 467-468 NN denotes −
T12318 466-467 NN denotes /
T12317 464-466 CD denotes 94
T12316 463-464 CD denotes −
T12315 459-462 CC denotes and
T12314 455-458 CD denotes 100
T12313 454-455 NN denotes −
T12312 453-454 NN denotes /
T12311 450-453 CD denotes 106
T12310 449-450 CD denotes −
T12309 446-448 IN denotes at
T12308 440-445 NNS denotes sites
T12307 435-439 JJ denotes AP-1
T12306 431-434 CD denotes two
T12305 427-430 DT denotes the
T12304 424-426 IN denotes of
T12303 417-423 DT denotes either
T12302 414-416 CC denotes or
T12301 410-413 CD denotes 172
T12300 409-410 NN denotes −
T12299 408-409 NN denotes /
T12298 405-408 CD denotes 177
R9027 T12227 T12265 advcl Considering,mutated
R9028 T12228 T12230 det the,sequence
R9029 T12229 T12230 amod conserved,sequence
R9030 T12230 T12227 dobj sequence,Considering
R9031 T12231 T12230 cc and,sequence
R9032 T12232 T12230 conj position,sequence
R9033 T12233 T12232 prep of,position
R9034 T12234 T12235 det the,CRE
R9035 T12235 T12233 pobj CRE,of
R9036 T12236 T12232 cc and,position
R9037 T12237 T12239 nummod two,sites
R9038 T12238 T12239 amod AP-1,sites
R9039 T12239 T12232 conj sites,position
R9040 T12240 T12239 prep in,sites
R9041 T12241 T12244 det the,promoter
R9042 T12242 T12244 compound murine,promoter
R9043 T12243 T12244 compound SerpinB2,promoter
R9044 T12244 T12240 pobj promoter,in
R9045 T12245 T12244 cc and,promoter
R9046 T12246 T12248 poss their,involvement
R9047 T12247 T12248 amod demonstrated,involvement
R9048 T12248 T12232 conj involvement,position
R9049 T12249 T12248 prep in,involvement
R9050 T12250 T12251 det the,PMA-responsiveness
R9051 T12251 T12249 pobj PMA-responsiveness,in
R9052 T12252 T12251 prep of,PMA-responsiveness
R9053 T12253 T12256 det the,promoter
R9054 T12254 T12256 amod human,promoter
R9055 T12255 T12256 compound SERPINB2,promoter
R9056 T12256 T12252 pobj promoter,of
R9057 T12257 T12256 appos [,promoter
R9058 T12258 T12259 nummod 37,]
R9059 T12259 T12256 appos ],promoter
R9060 T12260 T12265 punct ",",mutated
R9061 T12261 T12262 det these,sites
R9062 T12262 T12265 nsubjpass sites,mutated
R9063 T12263 T12265 auxpass were,mutated
R9064 T12264 T12265 advmod also,mutated
R9065 T12265 T12265 ROOT mutated,mutated
R9066 T12266 T12265 agent by,mutated
R9067 T12267 T12268 compound nucleotide,substitution
R9068 T12268 T12266 pobj substitution,by
R9069 T12269 T12270 aux to,investigate
R9070 T12270 T12265 advcl investigate,mutated
R9071 T12271 T12273 mark whether,played
R9072 T12272 T12273 nsubj they,played
R9073 T12273 T12270 ccomp played,investigate
R9074 T12274 T12275 det a,role
R9075 T12275 T12273 dobj role,played
R9076 T12276 T12275 prep in,role
R9077 T12277 T12279 det the,response
R9078 T12278 T12279 compound LPS,response
R9079 T12279 T12276 pobj response,in
R9080 T12280 T12279 prep of,response
R9081 T12281 T12284 det the,promoter
R9082 T12282 T12284 compound murine,promoter
R9083 T12283 T12284 compound SerpinB2,promoter
R9084 T12284 T12280 pobj promoter,of
R9085 T12285 T12265 punct .,mutated
R9086 T12286 T12287 mark As,shown
R9087 T12287 T12325 advcl shown,reduced
R9088 T12288 T12287 prep in,shown
R9089 T12289 T12290 compound Fig.,4B
R9090 T12290 T12288 pobj 4B,in
R9091 T12291 T12290 punct ",",4B
R9092 T12292 T12290 appos mutation,4B
R9093 T12293 T12292 prep of,mutation
R9094 T12294 T12295 det the,CRE
R9095 T12295 T12293 pobj CRE,of
R9096 T12296 T12292 prep at,mutation
R9097 T12297 T12301 nummod −,172
R9098 T12298 T12300 nummod 177,−
R9099 T12299 T12300 compound /,−
R9100 T12300 T12301 nummod −,172
R9101 T12301 T12296 pobj 172,at
R9102 T12302 T12301 cc or,172
R9103 T12303 T12301 conj either,172
R9104 T12304 T12303 prep of,either
R9105 T12305 T12308 det the,sites
R9106 T12306 T12308 nummod two,sites
R9107 T12307 T12308 amod AP-1,sites
R9108 T12308 T12304 pobj sites,of
R9109 T12309 T12303 prep at,either
R9110 T12310 T12325 punct −,reduced
R9111 T12311 T12313 nummod 106,−
R9112 T12312 T12313 compound /,−
R9113 T12313 T12325 nsubj −,reduced
R9114 T12314 T12313 nummod 100,−
R9115 T12315 T12313 cc and,−
R9116 T12316 T12319 meta −,−
R9117 T12317 T12319 nummod 94,−
R9118 T12318 T12319 compound /,−
R9119 T12319 T12313 conj −,−
R9120 T12320 T12319 nummod 88,−
R9121 T12321 T12319 punct ",",−
R9122 T12322 T12325 advmod completely,reduced
R9123 T12323 T12322 cc or,completely
R9124 T12324 T12322 conj significantly,completely
R9125 T12325 T12325 ROOT reduced,reduced
R9126 T12326 T12328 amod LPS-inducible,activity
R9127 T12327 T12328 compound luciferase,activity
R9128 T12328 T12325 dobj activity,reduced
R9129 T12329 T12325 prep from,reduced
R9130 T12330 T12333 det the,promoter
R9131 T12331 T12333 compound murine,promoter
R9132 T12332 T12333 compound SerpinB2,promoter
R9133 T12333 T12329 pobj promoter,from
R9134 T12334 T12325 punct .,reduced
R9135 T12335 T12336 det These,data
R9136 T12336 T12337 nsubj data,show
R9137 T12337 T12337 ROOT show,show
R9138 T12338 T12353 mark that,are
R9139 T12339 T12341 det the,element
R9140 T12340 T12341 compound C/EBP,element
R9141 T12341 T12353 nsubj element,are
R9142 T12342 T12341 punct ",",element
R9143 T12343 T12345 advmod as,as
R9144 T12344 T12345 advmod well,as
R9145 T12345 T12341 cc as,element
R9146 T12346 T12347 det the,CRE
R9147 T12347 T12341 conj CRE,element
R9148 T12348 T12347 cc and,CRE
R9149 T12349 T12352 det both,elements
R9150 T12350 T12352 amod AP-1,elements
R9151 T12351 T12352 amod cis-acting,elements
R9152 T12352 T12347 conj elements,CRE
R9153 T12353 T12337 ccomp are,show
R9154 T12354 T12353 acomp critical,are
R9155 T12355 T12354 prep for,critical
R9156 T12356 T12357 amod LPS-inducible,transcription
R9157 T12357 T12355 pobj transcription,for
R9158 T12358 T12357 prep from,transcription
R9159 T12359 T12362 det the,promoter
R9160 T12360 T12362 nmod SerpinB2,promoter
R9161 T12361 T12362 amod proximal,promoter
R9162 T12362 T12358 pobj promoter,from
R9163 T12363 T12337 punct .,show

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T11843 742-750 NN denotes promoter
T11842 733-741 JJ denotes proximal
T11841 724-732 NN denotes SerpinB2
T11840 720-723 DT denotes the
T11839 715-719 IN denotes from
T11838 701-714 NN denotes transcription
T11837 687-700 JJ denotes LPS-inducible
T11836 683-686 IN denotes for
T11835 674-682 JJ denotes critical
T11834 670-673 VB denotes are
T11833 661-669 NN denotes elements
T11832 650-660 JJ denotes cis-acting
T11831 645-649 NN denotes AP-1
T11830 640-644 DT denotes both
T11829 636-639 CC denotes and
T11828 632-635 NN denotes CRE
T11827 628-631 DT denotes the
T11826 625-627 IN denotes as
T11825 620-624 RB denotes well
T11824 617-619 RB denotes as
T11823 615-616 -COMMA- denotes ,
T11822 608-615 NN denotes element
T11821 602-607 NN denotes C/EBP
T11820 598-601 DT denotes the
T11819 593-597 IN denotes that
T11818 588-592 VB denotes show
T11817 583-587 NN denotes data
T11816 577-582 DT denotes These
T11815 567-575 NN denotes promoter
T11814 558-566 NN denotes SerpinB2
T11813 551-557 JJ denotes murine
T11812 547-550 DT denotes the
T11811 542-546 IN denotes from
T11810 533-541 NN denotes activity
T11809 522-532 NN denotes luciferase
T11808 508-521 JJ denotes LPS-inducible
T11807 500-507 VB denotes reduced
T11806 486-499 RB denotes significantly
T11805 483-485 CC denotes or
T11804 472-482 RB denotes completely
T11803 470-471 -COMMA- denotes ,
T11802 463-470 CD denotes −94/−88
T11801 459-462 CC denotes and
T11800 449-458 CD denotes −106/−100
T11799 446-448 IN denotes at
T11798 440-445 NN denotes sites
T11797 435-439 NN denotes AP-1
T11796 431-434 CD denotes two
T11795 427-430 DT denotes the
T11794 424-426 IN denotes of
T11793 417-423 DT denotes either
T11792 414-416 CC denotes or
T11791 404-413 CD denotes −177/−172
T11790 401-403 IN denotes at
T11789 397-400 NN denotes CRE
T11788 393-396 DT denotes the
T11787 390-392 IN denotes of
T11786 381-389 NN denotes mutation
T11785 379-380 -COMMA- denotes ,
T11784 377-379 NN denotes 4B
T11783 372-376 NNP denotes Fig.
T11782 369-371 IN denotes in
T11781 363-368 VB denotes shown
T11780 360-362 IN denotes As
T11779 350-358 NN denotes promoter
T11778 341-349 NN denotes SerpinB2
T11777 334-340 JJ denotes murine
T11776 330-333 DT denotes the
T11775 327-329 IN denotes of
T11774 318-326 NN denotes response
T11773 314-317 NN denotes LPS
T11772 310-313 DT denotes the
T11771 307-309 IN denotes in
T11770 302-306 NN denotes role
T11769 300-301 DT denotes a
T11768 293-299 VB denotes played
T11767 288-292 PRP denotes they
T11766 280-287 IN denotes whether
T11765 268-279 VB denotes investigate
T11764 265-267 TO denotes to
T11763 252-264 NN denotes substitution
T11762 241-251 NN denotes nucleotide
T11761 238-240 IN denotes by
T11760 230-237 VB denotes mutated
T11759 225-229 RB denotes also
T11758 220-224 VB denotes were
T11757 214-219 NN denotes sites
T11756 208-213 DT denotes these
T11755 206-207 -COMMA- denotes ,
T11754 205-206 -RRB- denotes ]
T11753 203-205 CD denotes 37
T11752 202-203 -LRB- denotes [
T11751 193-201 NN denotes promoter
T11750 184-192 NN denotes SERPINB2
T11749 178-183 JJ denotes human
T11748 174-177 DT denotes the
T11747 171-173 IN denotes of
T11746 152-170 NN denotes PMA-responsiveness
T11745 148-151 DT denotes the
T11744 145-147 IN denotes in
T11743 133-144 NN denotes involvement
T11742 120-132 VB denotes demonstrated
T11741 114-119 PRP-DOLLAR- denotes their
T11740 110-113 CC denotes and
T11739 101-109 NN denotes promoter
T11738 92-100 NN denotes SerpinB2
T11737 85-91 JJ denotes murine
T11736 81-84 DT denotes the
T11735 78-80 IN denotes in
T11734 72-77 NN denotes sites
T11733 67-71 NN denotes AP-1
T11732 63-66 CD denotes two
T11731 59-62 CC denotes and
T11730 55-58 NN denotes CRE
T11729 51-54 DT denotes the
T11728 48-50 IN denotes of
T11727 39-47 NN denotes position
T11726 35-38 CC denotes and
T11725 26-34 NN denotes sequence
T11724 16-25 VB denotes conserved
T11723 12-15 DT denotes the
T11722 0-11 VB denotes Considering
R8669 T11725 T11726 arg1Of sequence,and
R8670 T11726 T11722 arg2Of and,Considering
R8671 T11726 T11723 arg1Of and,the
R8672 T11726 T11724 arg2Of and,conserved
R8673 T11726 T11728 arg1Of and,of
R8674 T11726 T11744 arg1Of and,in
R8675 T11727 T11726 arg2Of position,and
R8676 T11730 T11731 arg1Of CRE,and
R8677 T11732 T11731 arg2Of two,and
R8678 T11734 T11728 arg2Of sites,of
R8679 T11734 T11729 arg1Of sites,the
R8680 T11734 T11730 arg1Of sites,CRE
R8681 T11734 T11732 arg1Of sites,two
R8682 T11734 T11733 arg1Of sites,AP-1
R8683 T11734 T11735 arg1Of sites,in
R8684 T11739 T11736 arg1Of promoter,the
R8685 T11739 T11737 arg1Of promoter,murine
R8686 T11739 T11738 arg1Of promoter,SerpinB2
R8687 T11739 T11740 arg1Of promoter,and
R8688 T11740 T11735 arg2Of and,in
R8689 T11743 T11740 arg2Of involvement,and
R8690 T11743 T11741 arg1Of involvement,their
R8691 T11743 T11742 arg2Of involvement,demonstrated
R8692 T11746 T11744 arg2Of PMA-responsiveness,in
R8693 T11746 T11745 arg1Of PMA-responsiveness,the
R8694 T11746 T11747 arg1Of PMA-responsiveness,of
R8695 T11751 T11747 arg2Of promoter,of
R8696 T11751 T11748 arg1Of promoter,the
R8697 T11751 T11749 arg1Of promoter,human
R8698 T11751 T11750 arg1Of promoter,SERPINB2
R8699 T11751 T11752 arg1Of promoter,[
R8700 T11753 T11752 arg2Of 37,[
R8701 T11754 T11752 arg3Of ],[
R8702 T11757 T11756 arg1Of sites,these
R8703 T11757 T11758 arg1Of sites,were
R8704 T11757 T11760 arg2Of sites,mutated
R8705 T11757 T11765 arg1Of sites,investigate
R8706 T11760 T11722 modOf mutated,Considering
R8707 T11760 T11755 arg1Of mutated,","
R8708 T11760 T11758 arg2Of mutated,were
R8709 T11760 T11759 arg1Of mutated,also
R8710 T11760 T11764 modOf mutated,to
R8711 T11763 T11760 arg1Of substitution,mutated
R8712 T11763 T11761 arg2Of substitution,by
R8713 T11763 T11762 arg1Of substitution,nucleotide
R8714 T11765 T11764 arg1Of investigate,to
R8715 T11767 T11768 arg1Of they,played
R8716 T11768 T11765 arg2Of played,investigate
R8717 T11768 T11766 arg1Of played,whether
R8718 T11768 T11771 arg1Of played,in
R8719 T11770 T11768 arg2Of role,played
R8720 T11770 T11769 arg1Of role,a
R8721 T11774 T11771 arg2Of response,in
R8722 T11774 T11772 arg1Of response,the
R8723 T11774 T11773 arg1Of response,LPS
R8724 T11774 T11775 arg1Of response,of
R8725 T11779 T11775 arg2Of promoter,of
R8726 T11779 T11776 arg1Of promoter,the
R8727 T11779 T11777 arg1Of promoter,murine
R8728 T11779 T11778 arg1Of promoter,SerpinB2
R8729 T11781 T11780 arg2Of shown,As
R8730 T11781 T11782 arg1Of shown,in
R8731 T11784 T11782 arg2Of 4B,in
R8732 T11784 T11783 arg1Of 4B,Fig.
R8733 T11786 T11787 arg1Of mutation,of
R8734 T11786 T11790 arg1Of mutation,at
R8735 T11786 T11803 arg1Of mutation,","
R8736 T11786 T11807 arg1Of mutation,reduced
R8737 T11789 T11787 arg2Of CRE,of
R8738 T11789 T11788 arg1Of CRE,the
R8739 T11793 T11790 arg2Of either,at
R8740 T11793 T11791 arg1Of either,−177/−172
R8741 T11793 T11792 arg1Of either,or
R8742 T11793 T11794 arg1Of either,of
R8743 T11798 T11794 arg2Of sites,of
R8744 T11798 T11795 arg1Of sites,the
R8745 T11798 T11796 arg1Of sites,two
R8746 T11798 T11797 arg1Of sites,AP-1
R8747 T11798 T11799 arg1Of sites,at
R8748 T11800 T11801 arg1Of −106/−100,and
R8749 T11801 T11799 arg2Of and,at
R8750 T11802 T11801 arg2Of −94/−88,and
R8751 T11804 T11805 arg1Of completely,or
R8752 T11806 T11805 arg2Of significantly,or
R8753 T11807 T11780 arg1Of reduced,As
R8754 T11807 T11785 arg1Of reduced,","
R8755 T11807 T11804 arg1Of reduced,completely
R8756 T11807 T11806 arg1Of reduced,significantly
R8757 T11810 T11807 arg2Of activity,reduced
R8758 T11810 T11808 arg1Of activity,LPS-inducible
R8759 T11810 T11809 arg1Of activity,luciferase
R8760 T11810 T11811 arg1Of activity,from
R8761 T11815 T11811 arg2Of promoter,from
R8762 T11815 T11812 arg1Of promoter,the
R8763 T11815 T11813 arg1Of promoter,murine
R8764 T11815 T11814 arg1Of promoter,SerpinB2
R8765 T11817 T11816 arg1Of data,These
R8766 T11817 T11818 arg1Of data,show
R8767 T11822 T11820 arg1Of element,the
R8768 T11822 T11821 arg1Of element,C/EBP
R8769 T11822 T11826 arg1Of element,as
R8770 T11826 T11823 arg1Of as,","
R8771 T11826 T11824 arg1Of as,as
R8772 T11826 T11825 arg1Of as,well
R8773 T11826 T11829 arg1Of as,and
R8774 T11828 T11826 arg2Of CRE,as
R8775 T11828 T11827 arg1Of CRE,the
R8776 T11829 T11834 arg1Of and,are
R8777 T11829 T11835 arg1Of and,critical
R8778 T11833 T11829 arg2Of elements,and
R8779 T11833 T11830 arg1Of elements,both
R8780 T11833 T11831 arg1Of elements,AP-1
R8781 T11833 T11832 arg1Of elements,cis-acting
R8782 T11834 T11818 arg2Of are,show
R8783 T11834 T11819 arg1Of are,that
R8784 T11835 T11834 arg2Of critical,are
R8785 T11835 T11836 arg1Of critical,for
R8786 T11838 T11836 arg2Of transcription,for
R8787 T11838 T11837 arg1Of transcription,LPS-inducible
R8788 T11838 T11839 arg1Of transcription,from
R8789 T11843 T11839 arg2Of promoter,from
R8790 T11843 T11840 arg1Of promoter,the
R8791 T11843 T11841 arg1Of promoter,SerpinB2
R8792 T11843 T11842 arg1Of promoter,proximal

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T11520 208-219 Antecedent denotes these sites
T11519 288-292 Anaphor denotes they
T11518 114-119 Antecedent denotes their
T11517 208-219 Anaphor denotes these sites
R8507 T11517 T11518 boundBy these sites,their
R8508 T11519 T11517 boundBy they,these sites

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11530 724-732 Protein denotes SerpinB2
T11529 558-566 Protein denotes SerpinB2
T11528 522-532 Protein denotes luciferase
T11527 341-349 Protein denotes SerpinB2
T11526 184-192 Protein denotes SERPINB2
T11525 92-100 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T11887 522-532 http://www.uniprot.org/uniprot/P08659 denotes luciferase
T11885 184-192 http://www.uniprot.org/uniprot/P05120 denotes SERPINB2
T11884 558-566 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T11883 341-349 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T11882 92-100 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T11877 645-649 http://www.uniprot.org/uniprot/P05412 denotes AP-1
T11876 435-439 http://www.uniprot.org/uniprot/P05412 denotes AP-1
T11875 67-71 http://www.uniprot.org/uniprot/P05412 denotes AP-1

GO-BP

Id Subject Object Predicate Lexical cue
T11542 522-541 http://purl.obolibrary.org/obo/GO_0050397 denotes luciferase activity
T11541 522-541 http://purl.obolibrary.org/obo/GO_0050248 denotes luciferase activity
T11540 522-541 http://purl.obolibrary.org/obo/GO_0047712 denotes luciferase activity
T11539 522-541 http://purl.obolibrary.org/obo/GO_0047077 denotes luciferase activity
T11538 522-541 http://purl.obolibrary.org/obo/GO_0045289 denotes luciferase activity
T11537 314-326 http://purl.obolibrary.org/obo/GO_0032496 denotes LPS response
T11536 701-714 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-MF

Id Subject Object Predicate Lexical cue
T11553 522-541 http://purl.obolibrary.org/obo/GO_0050397 denotes luciferase activity
T11552 522-541 http://purl.obolibrary.org/obo/GO_0050248 denotes luciferase activity
T11551 522-541 http://purl.obolibrary.org/obo/GO_0047712 denotes luciferase activity
T11550 522-541 http://purl.obolibrary.org/obo/GO_0047077 denotes luciferase activity
T11549 522-541 http://purl.obolibrary.org/obo/GO_0045289 denotes luciferase activity

sentences

Id Subject Object Predicate Lexical cue
T11450 577-751 Sentence denotes These data show that the C/EBP element, as well as the CRE and both AP-1 cis-acting elements are critical for LPS-inducible transcription from the SerpinB2 proximal promoter.
T11449 360-576 Sentence denotes As shown in Fig. 4B, mutation of the CRE at −177/−172 or either of the two AP-1 sites at −106/−100 and −94/−88, completely or significantly reduced LPS-inducible luciferase activity from the murine SerpinB2 promoter.
T11448 0-359 Sentence denotes Considering the conserved sequence and position of the CRE and two AP-1 sites in the murine SerpinB2 promoter and their demonstrated involvement in the PMA-responsiveness of the human SERPINB2 promoter [37], these sites were also mutated by nucleotide substitution to investigate whether they played a role in the LPS response of the murine SerpinB2 promoter.
T168 0-359 Sentence denotes Considering the conserved sequence and position of the CRE and two AP-1 sites in the murine SerpinB2 promoter and their demonstrated involvement in the PMA-responsiveness of the human SERPINB2 promoter [37], these sites were also mutated by nucleotide substitution to investigate whether they played a role in the LPS response of the murine SerpinB2 promoter.
T169 360-576 Sentence denotes As shown in Fig. 4B, mutation of the CRE at −177/−172 or either of the two AP-1 sites at −106/−100 and −94/−88, completely or significantly reduced LPS-inducible luciferase activity from the murine SerpinB2 promoter.
T170 577-751 Sentence denotes These data show that the C/EBP element, as well as the CRE and both AP-1 cis-acting elements are critical for LPS-inducible transcription from the SerpinB2 proximal promoter.

simple1

Id Subject Object Predicate Lexical cue
T11563 724-732 Protein denotes SerpinB2
T11562 558-566 Protein denotes SerpinB2
T11561 522-532 Protein denotes luciferase
T11560 341-349 Protein denotes SerpinB2
T11559 184-192 Protein denotes SERPINB2
T11558 92-100 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T11873 687-700 Positive_regulation denotes LPS-inducible
T11872 674-682 Positive_regulation denotes critical
T11871 701-714 Transcription denotes transcription
T11870 500-507 Negative_regulation denotes reduced
T11869 508-521 Positive_regulation denotes LPS-inducible
T11868 318-326 Positive_regulation denotes response
T11867 302-306 Regulation denotes role
T11866 152-170 Positive_regulation denotes PMA-responsiveness
T11863 724-732 Protein denotes SerpinB2
T11862 558-566 Protein denotes SerpinB2
T11861 522-532 Protein denotes luciferase
T11860 341-349 Protein denotes SerpinB2
T11859 184-192 Protein denotes SERPINB2
T11858 92-100 Protein denotes SerpinB2
R8795 T11859 T11866 themeOf SERPINB2,PMA-responsiveness
R8796 T11860 T11867 themeOf SerpinB2,role
R8797 T11860 T11868 themeOf SerpinB2,response
R8798 T11861 T11870 themeOf luciferase,reduced
R8799 T11861 T11869 themeOf luciferase,LPS-inducible
R8800 T11862 T11870 themeOf SerpinB2,reduced
R8801 T11863 T11871 themeOf SerpinB2,transcription
R8803 T11869 T11870 themeOf LPS-inducible,reduced
R8804 T11871 T11872 themeOf transcription,critical
R8805 T11871 T11873 themeOf transcription,LPS-inducible

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T11930 500-507 Negative_regulation denotes reduced
T11927 724-732 Protein denotes SerpinB2
T11926 558-566 Protein denotes SerpinB2
T11925 522-532 Protein denotes luciferase
T11924 341-349 Protein denotes SerpinB2
T11923 184-192 Protein denotes SERPINB2
T11922 92-100 Protein denotes SerpinB2
R8818 T11925 T11930 themeOf luciferase,reduced

DLUT931

Id Subject Object Predicate Lexical cue
T11917 508-521 Positive_regulation denotes LPS-inducible
T11916 500-507 Negative_regulation denotes reduced
T11912 724-732 Protein denotes SerpinB2
T11911 558-566 Protein denotes SerpinB2
T11910 522-532 Protein denotes luciferase
T11909 341-349 Protein denotes SerpinB2
T11908 184-192 Protein denotes SERPINB2
T11907 92-100 Protein denotes SerpinB2
R8811 T11910 T11916 themeOf luciferase,reduced
R8812 T11910 T11917 themeOf luciferase,LPS-inducible
R8813 T11911 T11916 themeOf SerpinB2,reduced
R8815 T11917 T11916 themeOf LPS-inducible,reduced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T12037 522-532 Protein denotes luciferase
T12033 435-439 Protein denotes AP-1
T12032 184-192 Protein denotes SERPINB2
T12030 687-690 Entity denotes LPS
T12028 314-317 Entity denotes LPS
T12027 51-58 Protein denotes the CRE
T12026 628-635 Protein denotes the CRE
T12022 208-219 Entity denotes these sites
T12020 547-575 Entity denotes the murine SerpinB2 promoter
T12019 558-566 Protein denotes SerpinB2
T12017 645-649 Protein denotes AP-1
T12016 724-732 Protein denotes SerpinB2
T12015 417-458 Entity denotes either of the two AP-1 sites at −106/−100
T12014 341-349 Protein denotes SerpinB2
T12012 330-358 Entity denotes the murine SerpinB2 promoter
T12009 67-71 Protein denotes AP-1
T12006 602-607 Protein denotes C/EBP
T12005 92-100 Protein denotes SerpinB2
T12004 390-400 Protein denotes of the CRE
T12002 81-109 Entity denotes the murine SerpinB2 promoter
T11997 241-251 Entity denotes nucleotide
T11995 63-77 Entity denotes two AP-1 sites
T11994 145-206 Entity denotes in the PMA-responsiveness of the human SERPINB2 promoter [37]
T11990 171-206 Entity denotes of the human SERPINB2 promoter [37]
T11988 424-458 Entity denotes of the two AP-1 sites at −106/−100
T11985 372-375 Protein denotes Fig
T11983 720-750 Entity denotes the SerpinB2 proximal promoter

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T11956 674-682 Positive_regulation denotes critical
T11955 701-714 Transcription denotes transcription
T11954 724-750 Protein denotes SerpinB2 proximal promoter
T11953 602-615 Protein denotes C/EBP element
T11952 500-507 Negative_regulation denotes reduced
T11951 512-521 Positive_regulation denotes inducible
T11950 551-575 Protein denotes murine SerpinB2 promoter
T11949 522-532 Protein denotes luciferase
T11948 508-511 Protein denotes LPS
T11947 435-445 Protein denotes AP-1 sites
T11946 372-375 Protein denotes Fig
T11945 302-306 Regulation denotes role
T11944 318-326 Positive_regulation denotes response
T11943 334-358 Protein denotes murine SerpinB2 promoter
T11942 85-109 Protein denotes murine SerpinB2 promoter
T11941 67-77 Protein denotes AP-1 sites
R8821 T11943 T11944 themeOf murine SerpinB2 promoter,response
R8822 T11944 T11945 themeOf response,role
R8823 T11948 T11951 causeOf LPS,inducible
R8824 T11949 T11951 themeOf luciferase,inducible
R8825 T11951 T11952 themeOf inducible,reduced
R8826 T11953 T11956 causeOf C/EBP element,critical
R8827 T11954 T11955 themeOf SerpinB2 proximal promoter,transcription
R8828 T11955 T11956 themeOf transcription,critical

testone

Id Subject Object Predicate Lexical cue
T11416 512-521 Positive_regulation denotes inducible
T11415 500-507 Negative_regulation denotes reduced
T11411 724-732 Protein denotes SerpinB2
T11410 558-566 Protein denotes SerpinB2
T11409 522-532 Protein denotes luciferase
T11408 341-349 Protein denotes SerpinB2
T11407 184-192 Protein denotes SERPINB2
T11406 92-100 Protein denotes SerpinB2
R8429 T11409 T11416 themeOf luciferase,inducible
R8430 T11416 T11415 themeOf inducible,reduced

test3

Id Subject Object Predicate Lexical cue
T11442 724-732 Protein denotes SerpinB2
T11441 558-566 Protein denotes SerpinB2
T11440 522-532 Protein denotes luciferase
T11439 512-521 Positive_regulation denotes inducible
T11438 500-507 Negative_regulation denotes reduced
T11437 341-349 Protein denotes SerpinB2
T11436 184-192 Protein denotes SERPINB2
T11435 92-100 Protein denotes SerpinB2
T11434 69-70 Entity denotes -
T11426 724-732 Protein denotes SerpinB2
T11425 558-566 Protein denotes SerpinB2
T11424 522-532 Protein denotes luciferase
T11423 341-349 Protein denotes SerpinB2
T11422 184-192 Protein denotes SERPINB2
T11421 92-100 Protein denotes SerpinB2
R8434 T11439 T11438 themeOf inducible,reduced
R8435 T11440 T11439 themeOf luciferase,inducible