PMC:3589482 / 2487-2674 JSONTXT

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    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T2627","span":{"begin":186,"end":187},"obj":"."},{"id":"T2626","span":{"begin":185,"end":186},"obj":"NNP"},{"id":"T2625","span":{"begin":184,"end":185},"obj":"CD"},{"id":"T2624","span":{"begin":183,"end":184},"obj":"NNP"},{"id":"T2623","span":{"begin":181,"end":182},"obj":":"},{"id":"T2622","span":{"begin":180,"end":181},"obj":"NNP"},{"id":"T2621","span":{"begin":179,"end":180},"obj":"CD"},{"id":"T2620","span":{"begin":178,"end":179},"obj":"NNP"},{"id":"T2619","span":{"begin":171,"end":177},"obj":"NN"},{"id":"T2618","span":{"begin":162,"end":170},"obj":"NN"},{"id":"T2617","span":{"begin":151,"end":161},"obj":"NN"},{"id":"T2616","span":{"begin":140,"end":150},"obj":"VBN"},{"id":"T2615","span":{"begin":133,"end":139},"obj":"RB"},{"id":"T2614","span":{"begin":131,"end":132},"obj":"DT"},{"id":"T2613","span":{"begin":129,"end":130},"obj":","},{"id":"T2612","span":{"begin":121,"end":129},"obj":"NNP"},{"id":"T2611","span":{"begin":119,"end":120},"obj":"-RRB-"},{"id":"T2610","span":{"begin":110,"end":119},"obj":"JJ"},{"id":"T2609","span":{"begin":109,"end":110},"obj":"-LRB-"},{"id":"T2608","span":{"begin":99,"end":108},"obj":"NN"},{"id":"T2607","span":{"begin":90,"end":98},"obj":"NN"},{"id":"T2606","span":{"begin":83,"end":89},"obj":"NN"},{"id":"T2605","span":{"begin":68,"end":82},"obj":"JJ"},{"id":"T2604","span":{"begin":64,"end":67},"obj":"DT"},{"id":"T2603","span":{"begin":61,"end":63},"obj":"VBZ"},{"id":"T2602","span":{"begin":55,"end":60},"obj":"VBN"},{"id":"T2601","span":{"begin":46,"end":54},"obj":"NNS"},{"id":"T2600","span":{"begin":41,"end":45},"obj":"NN"},{"id":"T2599","span":{"begin":30,"end":40},"obj":"NN"},{"id":"T2598","span":{"begin":16,"end":29},"obj":"JJ"},{"id":"T2597","span":{"begin":11,"end":15},"obj":"RBS"},{"id":"T2596","span":{"begin":7,"end":10},"obj":"DT"},{"id":"T2595","span":{"begin":4,"end":6},"obj":"IN"},{"id":"T2594","span":{"begin":0,"end":3},"obj":"CD"}],"relations":[{"id":"R1732","pred":"nsubj","subj":"T2594","obj":"T2603"},{"id":"R1733","pred":"prep","subj":"T2595","obj":"T2594"},{"id":"R1734","pred":"det","subj":"T2596","obj":"T2601"},{"id":"R1736","pred":"advmod","subj":"T2597","obj":"T2598"},{"id":"R1737","pred":"amod","subj":"T2598","obj":"T2601"},{"id":"R1738","pred":"amod","subj":"T2599","obj":"T2601"},{"id":"R1739","pred":"compound","subj":"T2600","obj":"T2601"},{"id":"R1741","pred":"pobj","subj":"T2601","obj":"T2595"},{"id":"R1742","pred":"acl","subj":"T2602","obj":"T2601"},{"id":"R1743","pred":"ROOT","subj":"T2603","obj":"T2603"},{"id":"R1745","pred":"det","subj":"T2604","obj":"T2608"},{"id":"R1746","pred":"amod","subj":"T2605","obj":"T2608"},{"id":"R1748","pred":"nmod","subj":"T2606","obj":"T2608"},{"id":"R1749","pred":"compound","subj":"T2607","obj":"T2608"},{"id":"R1750","pred":"attr","subj":"T2608","obj":"T2603"},{"id":"R1751","pred":"punct","subj":"T2609","obj":"T2608"},{"id":"R1753","pred":"appos","subj":"T2610","obj":"T2608"},{"id":"R1754","pred":"punct","subj":"T2611","obj":"T2608"},{"id":"R1755","pred":"appos","subj":"T2612","obj":"T2608"},{"id":"R1756","pred":"punct","subj":"T2613","obj":"T2612"},{"id":"R1757","pred":"det","subj":"T2614","obj":"T2619"},{"id":"R1758","pred":"advmod","subj":"T2615","obj":"T2616"},{"id":"R1760","pred":"amod","subj":"T2616","obj":"T2619"},{"id":"R1761","pred":"compound","subj":"T2617","obj":"T2619"},{"id":"R1763","pred":"compound","subj":"T2618","obj":"T2619"},{"id":"R1764","pred":"appos","subj":"T2619","obj":"T2608"},{"id":"R1765","pred":"nmod","subj":"T2620","obj":"T2622"},{"id":"R1767","pred":"nummod","subj":"T2621","obj":"T2622"},{"id":"R1768","pred":"appos","subj":"T2622","obj":"T2619"},{"id":"R1769","pred":"punct","subj":"T2623","obj":"T2603"},{"id":"R1770","pred":"ROOT","subj":"T2624","obj":"T2624"},{"id":"R1771","pred":"nummod","subj":"T2625","obj":"T2626"},{"id":"R1773","pred":"dobj","subj":"T2626","obj":"T2624"},{"id":"R1774","pred":"punct","subj":"T2627","obj":"T2624"}],"text":"One of the most LPS-inducible macrophage gene products known is the ovalbumin-like serine protease inhibitor (ov-serpin) SerpinB2, a widely recognized macrophage survival factor [4]; [5]."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T1557","span":{"begin":185,"end":186},"obj":"-RRB-"},{"id":"T1556","span":{"begin":184,"end":185},"obj":"CD"},{"id":"T1555","span":{"begin":183,"end":184},"obj":"-LRB-"},{"id":"T1554","span":{"begin":181,"end":182},"obj":"-COLON-"},{"id":"T1553","span":{"begin":180,"end":181},"obj":"-RRB-"},{"id":"T1552","span":{"begin":179,"end":180},"obj":"CD"},{"id":"T1551","span":{"begin":178,"end":179},"obj":"-LRB-"},{"id":"T1550","span":{"begin":171,"end":177},"obj":"NN"},{"id":"T1549","span":{"begin":162,"end":170},"obj":"NN"},{"id":"T1548","span":{"begin":151,"end":161},"obj":"NN"},{"id":"T1547","span":{"begin":140,"end":150},"obj":"VB"},{"id":"T1546","span":{"begin":133,"end":139},"obj":"RB"},{"id":"T1545","span":{"begin":131,"end":132},"obj":"DT"},{"id":"T1544","span":{"begin":129,"end":130},"obj":"-COMMA-"},{"id":"T1543","span":{"begin":121,"end":129},"obj":"NN"},{"id":"T1542","span":{"begin":119,"end":120},"obj":"-RRB-"},{"id":"T1541","span":{"begin":110,"end":119},"obj":"NN"},{"id":"T1540","span":{"begin":109,"end":110},"obj":"-LRB-"},{"id":"T1539","span":{"begin":99,"end":108},"obj":"NN"},{"id":"T1538","span":{"begin":90,"end":98},"obj":"NN"},{"id":"T1537","span":{"begin":83,"end":89},"obj":"NN"},{"id":"T1536","span":{"begin":68,"end":82},"obj":"JJ"},{"id":"T1535","span":{"begin":64,"end":67},"obj":"DT"},{"id":"T1534","span":{"begin":61,"end":63},"obj":"VB"},{"id":"T1533","span":{"begin":55,"end":60},"obj":"VB"},{"id":"T1532","span":{"begin":46,"end":54},"obj":"NN"},{"id":"T1531","span":{"begin":41,"end":45},"obj":"NN"},{"id":"T1530","span":{"begin":30,"end":40},"obj":"NN"},{"id":"T1529","span":{"begin":16,"end":29},"obj":"JJ"},{"id":"T1528","span":{"begin":11,"end":15},"obj":"RB"},{"id":"T1527","span":{"begin":7,"end":10},"obj":"DT"},{"id":"T1526","span":{"begin":4,"end":6},"obj":"IN"},{"id":"T1525","span":{"begin":0,"end":3},"obj":"CD"}],"relations":[{"id":"R926","pred":"arg1Of","subj":"T1525","obj":"T1526"},{"id":"R927","pred":"arg1Of","subj":"T1525","obj":"T1534"},{"id":"R928","pred":"arg1Of","subj":"T1529","obj":"T1528"},{"id":"R929","pred":"arg2Of","subj":"T1532","obj":"T1526"},{"id":"R930","pred":"arg1Of","subj":"T1532","obj":"T1527"},{"id":"R931","pred":"arg1Of","subj":"T1532","obj":"T1529"},{"id":"R932","pred":"arg1Of","subj":"T1532","obj":"T1530"},{"id":"R933","pred":"arg1Of","subj":"T1532","obj":"T1531"},{"id":"R934","pred":"arg2Of","subj":"T1532","obj":"T1533"},{"id":"R935","pred":"arg1Of","subj":"T1534","obj":"T1551"},{"id":"R936","pred":"arg1Of","subj":"T1534","obj":"T1554"},{"id":"R937","pred":"arg1Of","subj":"T1534","obj":"T1555"},{"id":"R938","pred":"arg2Of","subj":"T1541","obj":"T1540"},{"id":"R939","pred":"arg3Of","subj":"T1542","obj":"T1540"},{"id":"R940","pred":"arg2Of","subj":"T1543","obj":"T1534"},{"id":"R941","pred":"arg1Of","subj":"T1543","obj":"T1535"},{"id":"R942","pred":"arg1Of","subj":"T1543","obj":"T1536"},{"id":"R943","pred":"arg1Of","subj":"T1543","obj":"T1537"},{"id":"R944","pred":"arg1Of","subj":"T1543","obj":"T1538"},{"id":"R945","pred":"arg1Of","subj":"T1543","obj":"T1539"},{"id":"R946","pred":"arg1Of","subj":"T1543","obj":"T1540"},{"id":"R947","pred":"arg1Of","subj":"T1543","obj":"T1544"},{"id":"R948","pred":"arg1Of","subj":"T1547","obj":"T1546"},{"id":"R949","pred":"arg2Of","subj":"T1550","obj":"T1544"},{"id":"R950","pred":"arg1Of","subj":"T1550","obj":"T1545"},{"id":"R951","pred":"arg1Of","subj":"T1550","obj":"T1547"},{"id":"R952","pred":"arg1Of","subj":"T1550","obj":"T1548"},{"id":"R953","pred":"arg1Of","subj":"T1550","obj":"T1549"},{"id":"R954","pred":"arg2Of","subj":"T1552","obj":"T1551"},{"id":"R955","pred":"arg3Of","subj":"T1553","obj":"T1551"},{"id":"R956","pred":"arg2Of","subj":"T1556","obj":"T1555"},{"id":"R957","pred":"arg3Of","subj":"T1557","obj":"T1555"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"One of the most LPS-inducible macrophage gene products known is the ovalbumin-like serine protease inhibitor (ov-serpin) SerpinB2, a widely recognized macrophage survival factor [4]; [5]."}

    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T1299","span":{"begin":121,"end":129},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"One of the most LPS-inducible macrophage gene products known is the ovalbumin-like serine protease inhibitor (ov-serpin) SerpinB2, a widely recognized macrophage survival factor [4]; [5]."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T2105","span":{"begin":121,"end":129},"obj":"http://www.uniprot.org/uniprot/P05120"},{"id":"T2104","span":{"begin":68,"end":77},"obj":"http://www.uniprot.org/uniprot/E2RVI8"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"One of the most LPS-inducible macrophage gene products known is the ovalbumin-like serine protease inhibitor (ov-serpin) SerpinB2, a widely recognized macrophage survival factor [4]; [5]."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T1349","span":{"begin":83,"end":108},"obj":"http://purl.obolibrary.org/obo/GO_0004867"}],"text":"One of the most LPS-inducible macrophage gene products known is the ovalbumin-like serine protease inhibitor (ov-serpin) SerpinB2, a widely recognized macrophage survival factor [4]; [5]."}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T1378","span":{"begin":83,"end":108},"obj":"http://purl.obolibrary.org/obo/GO_0004867"}],"text":"One of the most LPS-inducible macrophage gene products known is the ovalbumin-like serine protease inhibitor (ov-serpin) SerpinB2, a widely recognized macrophage survival factor [4]; [5]."}

    sentences

    {"project":"sentences","denotations":[{"id":"T1208","span":{"begin":0,"end":187},"obj":"Sentence"},{"id":"T18","span":{"begin":0,"end":187},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"One of the most LPS-inducible macrophage gene products known is the ovalbumin-like serine protease inhibitor (ov-serpin) SerpinB2, a widely recognized macrophage survival factor [4]; [5]."}

    simple1

    {"project":"simple1","denotations":[{"id":"T1397","span":{"begin":121,"end":129},"obj":"Protein"}],"text":"One of the most LPS-inducible macrophage gene products known is the ovalbumin-like serine protease inhibitor (ov-serpin) SerpinB2, a widely recognized macrophage survival factor [4]; [5]."}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T2055","span":{"begin":121,"end":129},"obj":"Protein"}],"text":"One of the most LPS-inducible macrophage gene products known is the ovalbumin-like serine protease inhibitor (ov-serpin) SerpinB2, a widely recognized macrophage survival factor [4]; [5]."}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T2214","span":{"begin":121,"end":129},"obj":"Protein"}],"text":"One of the most LPS-inducible macrophage gene products known is the ovalbumin-like serine protease inhibitor (ov-serpin) SerpinB2, a widely recognized macrophage survival factor [4]; [5]."}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T2133","span":{"begin":121,"end":129},"obj":"Protein"}],"text":"One of the most LPS-inducible macrophage gene products known is the ovalbumin-like serine protease inhibitor (ov-serpin) SerpinB2, a widely recognized macrophage survival factor [4]; [5]."}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T2453","span":{"begin":83,"end":89},"obj":"Entity"},{"id":"T2432","span":{"begin":20,"end":60},"obj":"Protein"},{"id":"T2418","span":{"begin":151,"end":161},"obj":"Entity"},{"id":"T2396","span":{"begin":16,"end":19},"obj":"Entity"},{"id":"T2394","span":{"begin":30,"end":40},"obj":"Entity"},{"id":"T2392","span":{"begin":64,"end":130},"obj":"Protein"},{"id":"T2389","span":{"begin":99,"end":120},"obj":"Entity"},{"id":"T2387","span":{"begin":64,"end":130},"obj":"Protein"},{"id":"T2379","span":{"begin":110,"end":119},"obj":"Protein"}],"text":"One of the most LPS-inducible macrophage gene products known is the ovalbumin-like serine protease inhibitor (ov-serpin) SerpinB2, a widely recognized macrophage survival factor [4]; [5]."}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T2263","span":{"begin":99,"end":108},"obj":"Negative_regulation"},{"id":"T2262","span":{"begin":68,"end":98},"obj":"Protein"}],"relations":[{"id":"R1544","pred":"themeOf","subj":"T2262","obj":"T2263"}],"text":"One of the most LPS-inducible macrophage gene products known is the ovalbumin-like serine protease inhibitor (ov-serpin) SerpinB2, a widely recognized macrophage survival factor [4]; [5]."}

    testone

    {"project":"testone","denotations":[{"id":"T1094","span":{"begin":121,"end":129},"obj":"Protein"}],"text":"One of the most LPS-inducible macrophage gene products known is the ovalbumin-like serine protease inhibitor (ov-serpin) SerpinB2, a widely recognized macrophage survival factor [4]; [5]."}

    test3

    {"project":"test3","denotations":[{"id":"T1161","span":{"begin":121,"end":129},"obj":"Protein"},{"id":"T1135","span":{"begin":121,"end":129},"obj":"Protein"}],"text":"One of the most LPS-inducible macrophage gene products known is the ovalbumin-like serine protease inhibitor (ov-serpin) SerpinB2, a widely recognized macrophage survival factor [4]; [5]."}