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PMC:3589482 / 2487-2674 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2627 186-187 . denotes .
T2626 185-186 NNP denotes ]
T2625 184-185 CD denotes 5
T2624 183-184 NNP denotes [
T2623 181-182 : denotes ;
T2622 180-181 NNP denotes ]
T2621 179-180 CD denotes 4
T2620 178-179 NNP denotes [
T2619 171-177 NN denotes factor
T2618 162-170 NN denotes survival
T2617 151-161 NN denotes macrophage
T2616 140-150 VBN denotes recognized
T2615 133-139 RB denotes widely
T2614 131-132 DT denotes a
T2613 129-130 , denotes ,
T2612 121-129 NNP denotes SerpinB2
T2611 119-120 -RRB- denotes )
T2610 110-119 JJ denotes ov-serpin
T2609 109-110 -LRB- denotes (
T2608 99-108 NN denotes inhibitor
T2607 90-98 NN denotes protease
T2606 83-89 NN denotes serine
T2605 68-82 JJ denotes ovalbumin-like
T2604 64-67 DT denotes the
T2603 61-63 VBZ denotes is
T2602 55-60 VBN denotes known
T2601 46-54 NNS denotes products
T2600 41-45 NN denotes gene
T2599 30-40 NN denotes macrophage
T2598 16-29 JJ denotes LPS-inducible
T2597 11-15 RBS denotes most
T2596 7-10 DT denotes the
T2595 4-6 IN denotes of
T2594 0-3 CD denotes One
R1732 T2594 T2603 nsubj One,is
R1733 T2595 T2594 prep of,One
R1734 T2596 T2601 det the,products
R1736 T2597 T2598 advmod most,LPS-inducible
R1737 T2598 T2601 amod LPS-inducible,products
R1738 T2599 T2601 amod macrophage,products
R1739 T2600 T2601 compound gene,products
R1741 T2601 T2595 pobj products,of
R1742 T2602 T2601 acl known,products
R1743 T2603 T2603 ROOT is,is
R1745 T2604 T2608 det the,inhibitor
R1746 T2605 T2608 amod ovalbumin-like,inhibitor
R1748 T2606 T2608 nmod serine,inhibitor
R1749 T2607 T2608 compound protease,inhibitor
R1750 T2608 T2603 attr inhibitor,is
R1751 T2609 T2608 punct (,inhibitor
R1753 T2610 T2608 appos ov-serpin,inhibitor
R1754 T2611 T2608 punct ),inhibitor
R1755 T2612 T2608 appos SerpinB2,inhibitor
R1756 T2613 T2612 punct ",",SerpinB2
R1757 T2614 T2619 det a,factor
R1758 T2615 T2616 advmod widely,recognized
R1760 T2616 T2619 amod recognized,factor
R1761 T2617 T2619 compound macrophage,factor
R1763 T2618 T2619 compound survival,factor
R1764 T2619 T2608 appos factor,inhibitor
R1765 T2620 T2622 nmod [,]
R1767 T2621 T2622 nummod 4,]
R1768 T2622 T2619 appos ],factor
R1769 T2623 T2603 punct ;,is
R1770 T2624 T2624 ROOT [,[
R1771 T2625 T2626 nummod 5,]
R1773 T2626 T2624 dobj ],[
R1774 T2627 T2624 punct .,[

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1557 185-186 -RRB- denotes ]
T1556 184-185 CD denotes 5
T1555 183-184 -LRB- denotes [
T1554 181-182 -COLON- denotes ;
T1553 180-181 -RRB- denotes ]
T1552 179-180 CD denotes 4
T1551 178-179 -LRB- denotes [
T1550 171-177 NN denotes factor
T1549 162-170 NN denotes survival
T1548 151-161 NN denotes macrophage
T1547 140-150 VB denotes recognized
T1546 133-139 RB denotes widely
T1545 131-132 DT denotes a
T1544 129-130 -COMMA- denotes ,
T1543 121-129 NN denotes SerpinB2
T1542 119-120 -RRB- denotes )
T1541 110-119 NN denotes ov-serpin
T1540 109-110 -LRB- denotes (
T1539 99-108 NN denotes inhibitor
T1538 90-98 NN denotes protease
T1537 83-89 NN denotes serine
T1536 68-82 JJ denotes ovalbumin-like
T1535 64-67 DT denotes the
T1534 61-63 VB denotes is
T1533 55-60 VB denotes known
T1532 46-54 NN denotes products
T1531 41-45 NN denotes gene
T1530 30-40 NN denotes macrophage
T1529 16-29 JJ denotes LPS-inducible
T1528 11-15 RB denotes most
T1527 7-10 DT denotes the
T1526 4-6 IN denotes of
T1525 0-3 CD denotes One
R926 T1525 T1526 arg1Of One,of
R927 T1525 T1534 arg1Of One,is
R928 T1529 T1528 arg1Of LPS-inducible,most
R929 T1532 T1526 arg2Of products,of
R930 T1532 T1527 arg1Of products,the
R931 T1532 T1529 arg1Of products,LPS-inducible
R932 T1532 T1530 arg1Of products,macrophage
R933 T1532 T1531 arg1Of products,gene
R934 T1532 T1533 arg2Of products,known
R935 T1534 T1551 arg1Of is,[
R936 T1534 T1554 arg1Of is,;
R937 T1534 T1555 arg1Of is,[
R938 T1541 T1540 arg2Of ov-serpin,(
R939 T1542 T1540 arg3Of ),(
R940 T1543 T1534 arg2Of SerpinB2,is
R941 T1543 T1535 arg1Of SerpinB2,the
R942 T1543 T1536 arg1Of SerpinB2,ovalbumin-like
R943 T1543 T1537 arg1Of SerpinB2,serine
R944 T1543 T1538 arg1Of SerpinB2,protease
R945 T1543 T1539 arg1Of SerpinB2,inhibitor
R946 T1543 T1540 arg1Of SerpinB2,(
R947 T1543 T1544 arg1Of SerpinB2,","
R948 T1547 T1546 arg1Of recognized,widely
R949 T1550 T1544 arg2Of factor,","
R950 T1550 T1545 arg1Of factor,a
R951 T1550 T1547 arg1Of factor,recognized
R952 T1550 T1548 arg1Of factor,macrophage
R953 T1550 T1549 arg1Of factor,survival
R954 T1552 T1551 arg2Of 4,[
R955 T1553 T1551 arg3Of ],[
R956 T1556 T1555 arg2Of 5,[
R957 T1557 T1555 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1299 121-129 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2105 121-129 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T2104 68-77 http://www.uniprot.org/uniprot/E2RVI8 denotes ovalbumin

GO-BP

Id Subject Object Predicate Lexical cue
T1349 83-108 http://purl.obolibrary.org/obo/GO_0004867 denotes serine protease inhibitor

GO-MF

Id Subject Object Predicate Lexical cue
T1378 83-108 http://purl.obolibrary.org/obo/GO_0004867 denotes serine protease inhibitor

sentences

Id Subject Object Predicate Lexical cue
T1208 0-187 Sentence denotes One of the most LPS-inducible macrophage gene products known is the ovalbumin-like serine protease inhibitor (ov-serpin) SerpinB2, a widely recognized macrophage survival factor [4]; [5].
T18 0-187 Sentence denotes One of the most LPS-inducible macrophage gene products known is the ovalbumin-like serine protease inhibitor (ov-serpin) SerpinB2, a widely recognized macrophage survival factor [4]; [5].

simple1

Id Subject Object Predicate Lexical cue
T1397 121-129 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2055 121-129 Protein denotes SerpinB2

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2214 121-129 Protein denotes SerpinB2

DLUT931

Id Subject Object Predicate Lexical cue
T2133 121-129 Protein denotes SerpinB2

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2453 83-89 Entity denotes serine
T2432 20-60 Protein denotes inducible macrophage gene products known
T2418 151-161 Entity denotes macrophage
T2396 16-19 Entity denotes LPS
T2394 30-40 Entity denotes macrophage
T2392 64-130 Protein denotes the ovalbumin-like serine protease inhibitor (ov-serpin) SerpinB2,
T2389 99-120 Entity denotes inhibitor (ov-serpin)
T2387 64-130 Protein denotes the ovalbumin-like serine protease inhibitor (ov-serpin) SerpinB2,
T2379 110-119 Protein denotes ov-serpin

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T2263 99-108 Negative_regulation denotes inhibitor
T2262 68-98 Protein denotes ovalbumin-like serine protease
R1544 T2262 T2263 themeOf ovalbumin-like serine protease,inhibitor

testone

Id Subject Object Predicate Lexical cue
T1094 121-129 Protein denotes SerpinB2

test3

Id Subject Object Predicate Lexical cue
T1161 121-129 Protein denotes SerpinB2
T1135 121-129 Protein denotes SerpinB2