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PMC:3589482 / 23850-24555 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T23695 429-430 : denotes ;
T23694 422-429 NN denotes element
T23693 413-421 NN denotes response
T23692 408-412 NNP denotes cAMP
T23691 406-407 SYM denotes =
T23690 402-405 NNP denotes CRE
T23689 400-401 : denotes ;
T23688 393-400 NN denotes protein
T23687 385-392 JJ denotes binding
T23686 376-384 NN denotes enhancer
T23685 370-375 NNP denotes CCAAT
T23684 367-368 SYM denotes =
T23683 361-366 NNP denotes C/EBP
T23682 359-360 : denotes ;
T23681 358-359 CD denotes 1
T23680 350-357 NN denotes protein
T23679 340-349 NN denotes activator
T23678 337-338 SYM denotes =
T23677 332-336 CD denotes AP-1
T23676 330-331 . denotes .
T23675 323-330 VBN denotes labeled
T23674 319-322 CC denotes and
T23673 313-318 VBN denotes boxed
T23672 309-312 VBP denotes are
T23671 299-308 NNS denotes promoters
T23670 290-298 NNP denotes SerpinB2
T23669 283-289 JJ denotes murine
T23668 279-282 CC denotes and
T23667 273-278 JJ denotes human
T23666 269-272 DT denotes the
T23665 261-268 IN denotes between
T23664 251-260 VBD denotes conserved
T23663 242-250 NNS denotes elements
T23662 231-241 JJ denotes Cis-acting
T23661 229-230 . denotes .
T23660 221-229 NN denotes software
T23659 219-220 NNP denotes W
T23658 211-218 JJ denotes Clustal
T23657 205-210 VBG denotes using
T23656 197-204 VBN denotes aligned
T23655 192-196 VBD denotes were
T23654 182-191 NNS denotes sequences
T23653 171-181 NN denotes nucleotide
T23652 165-170 JJ denotes human
T23651 161-164 CC denotes and
T23650 155-160 NNP denotes Mouse
T23649 153-154 . denotes .
T23648 152-153 CD denotes 1
T23647 151-152 NN denotes −
T23646 150-151 CD denotes /
T23645 147-150 CD denotes 563
T23644 146-147 NN denotes −
T23643 137-145 NN denotes promoter
T23642 128-136 NNP denotes SerpinB2
T23641 121-127 NN denotes murine
T23640 117-120 DT denotes the
T23639 114-116 IN denotes of
T23638 107-113 NN denotes region
T23637 96-106 JJ denotes responsive
T23636 92-95 NNP denotes LPS
T23635 88-91 DT denotes the
T23634 85-87 IN denotes in
T23633 76-84 NNS denotes elements
T23632 65-75 JJ denotes regulatory
T23631 54-64 JJ denotes cis-acting
T23630 44-53 JJ denotes Potential
T23752 704-705 . denotes .
T23751 699-704 VBN denotes shown
T23750 694-698 RB denotes also
T23749 690-693 VBP denotes are
T23748 679-689 NNS denotes constructs
T23747 670-678 NN denotes reporter
T23746 667-669 CD denotes 87
T23745 666-667 CD denotes −
T23744 662-665 CC denotes and
T23743 658-661 CD denotes 189
T23742 657-658 CD denotes −
T23741 655-656 , denotes ,
T23740 652-655 CD denotes 539
T23739 651-652 NN denotes −
T23738 647-650 DT denotes the
T23737 644-646 IN denotes of
T23736 639-643 NNS denotes ends
T23735 637-638 '' denotes '
T23734 636-637 CD denotes 5
T23733 632-635 DT denotes the
T23732 629-631 IN denotes of
T23731 620-628 NN denotes location
T23730 616-619 DT denotes The
T23729 614-615 . denotes .
T23728 605-614 NN denotes uppercase
T23727 602-604 IN denotes in
T23726 592-601 VBN denotes presented
T23725 589-591 VBZ denotes is
T23724 587-588 CD denotes 1
T23723 582-586 VB denotes exon
T23722 578-581 CC denotes and
T23721 568-577 VBN denotes indicated
T23720 565-567 VBZ denotes is
T23719 563-564 -RRB- denotes )
T23718 560-563 FW denotes tis
T23717 559-560 -LRB- denotes (
T23716 554-558 NN denotes site
T23715 543-553 NN denotes initiation
T23714 529-542 NN denotes transcription
T23713 520-528 JJ denotes putative
T23712 516-519 DT denotes The
T23711 514-515 . denotes .
T23710 513-514 CD denotes 1
T23709 505-512 NN denotes protein
T23708 497-504 JJ denotes binding
T23707 493-496 NN denotes box
T23706 486-492 VB denotes purine
T23705 483-484 SYM denotes =
T23704 480-482 CD denotes .1
T23703 478-480 NNP denotes PU
T23702 476-477 : denotes ;
T23701 468-476 NNP denotes 1/POU2F1
T23700 461-467 NN denotes factor
T23699 447-460 NN denotes transcription
T23698 439-446 JJR denotes octamer
T23697 436-437 SYM denotes =
T23696 431-435 NNP denotes Oct1
R16983 T23630 T23633 amod Potential,elements
R16984 T23631 T23633 amod cis-acting,elements
R16985 T23632 T23633 amod regulatory,elements
R16986 T23633 T23633 ROOT elements,elements
R16987 T23634 T23633 prep in,elements
R16988 T23635 T23638 det the,region
R16989 T23636 T23638 nmod LPS,region
R16990 T23637 T23638 amod responsive,region
R16991 T23638 T23634 pobj region,in
R16992 T23639 T23638 prep of,region
R16993 T23640 T23643 det the,promoter
R16994 T23641 T23643 compound murine,promoter
R16995 T23642 T23643 compound SerpinB2,promoter
R16996 T23643 T23639 pobj promoter,of
R16997 T23644 T23648 nmod −,1
R16998 T23645 T23644 nummod 563,−
R16999 T23646 T23648 nummod /,1
R17000 T23647 T23648 compound −,1
R17001 T23648 T23643 appos 1,promoter
R17002 T23649 T23633 punct .,elements
R17003 T23650 T23656 nsubjpass Mouse,aligned
R17004 T23651 T23650 cc and,Mouse
R17005 T23652 T23654 amod human,sequences
R17006 T23653 T23654 compound nucleotide,sequences
R17007 T23654 T23650 conj sequences,Mouse
R17008 T23655 T23656 auxpass were,aligned
R17009 T23656 T23656 ROOT aligned,aligned
R17010 T23657 T23656 advcl using,aligned
R17011 T23658 T23660 amod Clustal,software
R17012 T23659 T23660 compound W,software
R17013 T23660 T23657 dobj software,using
R17014 T23661 T23656 punct .,aligned
R17015 T23662 T23663 amod Cis-acting,elements
R17016 T23663 T23664 nsubj elements,conserved
R17017 T23664 T23664 ROOT conserved,conserved
R17018 T23665 T23664 prep between,conserved
R17019 T23666 T23671 det the,promoters
R17020 T23667 T23671 amod human,promoters
R17021 T23668 T23667 cc and,human
R17022 T23669 T23667 conj murine,human
R17023 T23670 T23671 compound SerpinB2,promoters
R17024 T23671 T23665 pobj promoters,between
R17025 T23672 T23673 auxpass are,boxed
R17026 T23673 T23664 conj boxed,conserved
R17027 T23674 T23673 cc and,boxed
R17028 T23675 T23673 conj labeled,boxed
R17029 T23676 T23664 punct .,conserved
R17030 T23677 T23680 nummod AP-1,protein
R17031 T23678 T23679 punct =,activator
R17032 T23679 T23680 compound activator,protein
R17033 T23680 T23680 ROOT protein,protein
R17034 T23681 T23680 nummod 1,protein
R17035 T23682 T23686 punct ;,enhancer
R17036 T23683 T23686 compound C/EBP,enhancer
R17037 T23684 T23685 punct =,CCAAT
R17038 T23685 T23686 compound CCAAT,enhancer
R17039 T23686 T23680 appos enhancer,protein
R17040 T23687 T23688 amod binding,protein
R17041 T23688 T23686 appos protein,enhancer
R17042 T23689 T23686 punct ;,enhancer
R17043 T23690 T23692 nmod CRE,cAMP
R17044 T23691 T23692 punct =,cAMP
R17045 T23692 T23694 compound cAMP,element
R17046 T23693 T23694 compound response,element
R17047 T23694 T23686 appos element,enhancer
R17048 T23695 T23701 punct ;,1/POU2F1
R17049 T23696 T23701 compound Oct1,1/POU2F1
R17050 T23697 T23698 punct =,octamer
R17051 T23698 T23700 amod octamer,factor
R17052 T23699 T23700 compound transcription,factor
R17053 T23700 T23701 compound factor,1/POU2F1
R17054 T23701 T23686 appos 1/POU2F1,enhancer
R17055 T23702 T23701 punct ;,1/POU2F1
R17056 T23703 T23707 nmod PU,box
R17057 T23704 T23703 nummod .1,PU
R17058 T23705 T23706 punct =,purine
R17059 T23706 T23707 compound purine,box
R17060 T23707 T23709 compound box,protein
R17061 T23708 T23709 amod binding,protein
R17062 T23709 T23701 appos protein,1/POU2F1
R17063 T23710 T23709 nummod 1,protein
R17064 T23711 T23686 punct .,enhancer
R17065 T23712 T23716 det The,site
R17066 T23713 T23716 amod putative,site
R17067 T23714 T23715 compound transcription,initiation
R17068 T23715 T23716 compound initiation,site
R17069 T23716 T23721 nsubjpass site,indicated
R17070 T23717 T23716 punct (,site
R17071 T23718 T23716 appos tis,site
R17072 T23719 T23716 punct ),site
R17073 T23720 T23721 auxpass is,indicated
R17074 T23721 T23721 ROOT indicated,indicated
R17075 T23722 T23721 cc and,indicated
R17076 T23723 T23726 nsubjpass exon,presented
R17077 T23724 T23723 nummod 1,exon
R17078 T23725 T23726 auxpass is,presented
R17079 T23726 T23721 conj presented,indicated
R17080 T23727 T23726 prep in,presented
R17081 T23728 T23727 pobj uppercase,in
R17082 T23729 T23726 punct .,presented
R17083 T23730 T23731 det The,location
R17084 T23731 T23736 nsubj location,ends
R17085 T23732 T23731 prep of,location
R17086 T23733 T23734 det the,5
R17087 T23734 T23732 pobj 5,of
R17088 T23735 T23736 punct ',ends
R17089 T23736 T23751 nsubjpass ends,shown
R17090 T23737 T23736 prep of,ends
R17091 T23738 T23739 det the,−
R17092 T23739 T23737 pobj −,of
R17093 T23740 T23739 nummod 539,−
R17094 T23741 T23739 punct ",",−
R17095 T23742 T23743 nummod −,189
R17096 T23743 T23739 conj 189,−
R17097 T23744 T23743 cc and,189
R17098 T23745 T23748 nmod −,constructs
R17099 T23746 T23748 nummod 87,constructs
R17100 T23747 T23748 compound reporter,constructs
R17101 T23748 T23736 conj constructs,ends
R17102 T23749 T23751 auxpass are,shown
R17103 T23750 T23751 advmod also,shown
R17104 T23751 T23751 ROOT shown,shown
R17105 T23752 T23751 punct .,shown

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T23538 699-704 VB denotes shown
T23537 694-698 RB denotes also
T23536 690-693 VB denotes are
T23535 679-689 NN denotes constructs
T23534 670-678 NN denotes reporter
T23533 666-669 CD denotes −87
T23532 662-665 CC denotes and
T23531 657-661 CD denotes −189
T23530 655-656 -COMMA- denotes ,
T23529 651-655 CD denotes −539
T23528 647-650 DT denotes the
T23527 644-646 IN denotes of
T23526 639-643 NN denotes ends
T23525 637-638 SYM denotes '
T23524 636-637 CD denotes 5
T23523 632-635 DT denotes the
T23522 629-631 IN denotes of
T23521 620-628 NN denotes location
T23520 616-619 DT denotes The
T23519 605-614 NN denotes uppercase
T23518 602-604 IN denotes in
T23517 592-601 VB denotes presented
T23516 589-591 VB denotes is
T23515 587-588 CD denotes 1
T23514 582-586 NN denotes exon
T23513 578-581 CC denotes and
T23512 568-577 VB denotes indicated
T23511 565-567 VB denotes is
T23510 563-564 -RRB- denotes )
T23509 560-563 NN denotes tis
T23508 559-560 -LRB- denotes (
T23507 554-558 NN denotes site
T23506 543-553 NN denotes initiation
T23505 529-542 NN denotes transcription
T23504 520-528 JJ denotes putative
T23503 516-519 DT denotes The
T23502 513-514 CD denotes 1
T23501 505-512 NN denotes protein
T23500 497-504 NN denotes binding
T23499 493-496 NN denotes box
T23498 486-492 NN denotes purine
T23497 478-485 NN denotes PU.1 = 
T23496 476-477 -COLON- denotes ;
T23495 468-476 NN denotes 1/POU2F1
T23494 461-467 NN denotes factor
T23493 447-460 NN denotes transcription
T23492 439-446 NN denotes octamer
T23491 431-438 NN denotes Oct1 = 
T23490 429-430 -COLON- denotes ;
T23489 422-429 NN denotes element
T23488 413-421 NN denotes response
T23487 402-412 NN denotes CRE = cAMP
T23486 400-401 -COLON- denotes ;
T23485 393-400 NN denotes protein
T23484 385-392 NN denotes binding
T23483 376-384 NN denotes enhancer
T23482 370-375 NN denotes CCAAT
T23481 361-369 NN denotes C/EBP = 
T23480 359-360 -COLON- denotes ;
T23470 290-298 NN denotes SerpinB2
T23469 283-289 JJ denotes murine
T23468 279-282 CC denotes and
T23467 273-278 JJ denotes human
T23466 269-272 DT denotes the
T23465 261-268 IN denotes between
T23464 251-260 VB denotes conserved
T23463 242-250 NN denotes elements
T23462 231-241 JJ denotes Cis-acting
T23461 221-229 NN denotes software
T23460 219-220 NNP denotes W
T23459 211-218 NNP denotes Clustal
T23458 205-210 VB denotes using
T23457 197-204 VB denotes aligned
T23456 192-196 VB denotes were
T23455 182-191 NN denotes sequences
T23454 171-181 NN denotes nucleotide
T23453 165-170 JJ denotes human
T23452 161-164 CC denotes and
T23451 155-160 NN denotes Mouse
T23450 146-153 LS denotes −563/−1
T23449 137-145 NN denotes promoter
T23448 128-136 NN denotes SerpinB2
T23447 121-127 JJ denotes murine
T23446 117-120 DT denotes the
T23445 114-116 IN denotes of
T23444 107-113 NN denotes region
T23443 96-106 JJ denotes responsive
T23442 92-95 NN denotes LPS
T23441 88-91 DT denotes the
T23440 85-87 IN denotes in
T23439 76-84 NN denotes elements
T23438 65-75 JJ denotes regulatory
T23437 54-64 JJ denotes cis-acting
T23436 44-53 JJ denotes Potential
T23479 358-359 CD denotes 1
T23478 350-357 NN denotes protein
T23477 340-349 NN denotes activator
T23476 332-339 NN denotes AP-1 = 
T23475 323-330 VB denotes labeled
T23474 319-322 CC denotes and
T23473 313-318 VB denotes boxed
T23472 309-312 VB denotes are
T23471 299-308 NN denotes promoters
R16863 T23439 T23436 arg1Of elements,Potential
R16864 T23439 T23437 arg1Of elements,cis-acting
R16865 T23439 T23438 arg1Of elements,regulatory
R16866 T23439 T23440 arg1Of elements,in
R16867 T23444 T23440 arg2Of region,in
R16868 T23444 T23441 arg1Of region,the
R16869 T23444 T23442 arg1Of region,LPS
R16870 T23444 T23443 arg1Of region,responsive
R16871 T23444 T23445 arg1Of region,of
R16872 T23449 T23445 arg2Of promoter,of
R16873 T23449 T23446 arg1Of promoter,the
R16874 T23449 T23447 arg1Of promoter,murine
R16875 T23449 T23448 arg1Of promoter,SerpinB2
R16876 T23455 T23451 arg1Of sequences,Mouse
R16877 T23455 T23452 arg1Of sequences,and
R16878 T23455 T23453 arg1Of sequences,human
R16879 T23455 T23454 arg1Of sequences,nucleotide
R16880 T23455 T23456 arg1Of sequences,were
R16881 T23455 T23457 arg2Of sequences,aligned
R16882 T23457 T23456 arg2Of aligned,were
R16883 T23458 T23457 arg3Of using,aligned
R16884 T23460 T23459 arg1Of W,Clustal
R16885 T23461 T23458 arg2Of software,using
R16886 T23461 T23460 arg1Of software,W
R16887 T23463 T23462 arg1Of elements,Cis-acting
R16888 T23463 T23464 arg2Of elements,conserved
R16889 T23463 T23472 arg1Of elements,are
R16890 T23463 T23473 arg2Of elements,boxed
R16891 T23463 T23475 arg2Of elements,labeled
R16892 T23464 T23465 arg1Of conserved,between
R16893 T23467 T23468 arg1Of human,and
R16894 T23469 T23468 arg2Of murine,and
R16895 T23471 T23465 arg2Of promoters,between
R16896 T23471 T23466 arg1Of promoters,the
R16897 T23471 T23467 arg1Of promoters,human
R16898 T23471 T23469 arg1Of promoters,murine
R16899 T23471 T23470 arg1Of promoters,SerpinB2
R16900 T23473 T23474 arg1Of boxed,and
R16901 T23474 T23472 arg2Of and,are
R16902 T23475 T23474 arg2Of labeled,and
R16903 T23478 T23476 arg1Of protein,AP-1 = 
R16904 T23478 T23477 arg1Of protein,activator
R16905 T23478 T23479 arg1Of protein,1
R16906 T23478 T23480 arg1Of protein,;
R16907 T23480 T23486 arg1Of ;,;
R16908 T23485 T23480 arg2Of protein,;
R16909 T23485 T23481 arg1Of protein,C/EBP = 
R16910 T23485 T23482 arg1Of protein,CCAAT
R16911 T23485 T23483 arg1Of protein,enhancer
R16912 T23485 T23484 arg1Of protein,binding
R16913 T23486 T23496 arg1Of ;,;
R16914 T23489 T23487 arg1Of element,CRE = cAMP
R16915 T23489 T23488 arg1Of element,response
R16916 T23489 T23490 arg1Of element,;
R16917 T23490 T23486 arg2Of ;,;
R16918 T23495 T23490 arg2Of 1/POU2F1,;
R16919 T23495 T23491 arg1Of 1/POU2F1,Oct1 = 
R16920 T23495 T23492 arg1Of 1/POU2F1,octamer
R16921 T23495 T23493 arg1Of 1/POU2F1,transcription
R16922 T23495 T23494 arg1Of 1/POU2F1,factor
R16923 T23501 T23496 arg2Of protein,;
R16924 T23501 T23497 arg1Of protein,PU.1 = 
R16925 T23501 T23498 arg1Of protein,purine
R16926 T23501 T23499 arg1Of protein,box
R16927 T23501 T23500 arg1Of protein,binding
R16928 T23501 T23502 arg1Of protein,1
R16929 T23507 T23503 arg1Of site,The
R16930 T23507 T23504 arg1Of site,putative
R16931 T23507 T23505 arg1Of site,transcription
R16932 T23507 T23506 arg1Of site,initiation
R16933 T23507 T23508 arg1Of site,(
R16934 T23507 T23511 arg1Of site,is
R16935 T23507 T23512 arg2Of site,indicated
R16936 T23509 T23508 arg2Of tis,(
R16937 T23510 T23508 arg3Of ),(
R16938 T23512 T23511 arg2Of indicated,is
R16939 T23512 T23513 arg1Of indicated,and
R16940 T23514 T23515 arg1Of exon,1
R16941 T23514 T23516 arg1Of exon,is
R16942 T23514 T23517 arg2Of exon,presented
R16943 T23517 T23513 arg2Of presented,and
R16944 T23517 T23516 arg2Of presented,is
R16945 T23517 T23518 arg1Of presented,in
R16946 T23519 T23518 arg2Of uppercase,in
R16947 T23521 T23520 arg1Of location,The
R16948 T23521 T23522 arg1Of location,of
R16949 T23521 T23536 arg1Of location,are
R16950 T23521 T23538 arg2Of location,shown
R16951 T23525 T23523 arg1Of ',the
R16952 T23525 T23524 arg1Of ',5
R16953 T23526 T23522 arg2Of ends,of
R16954 T23526 T23525 arg1Of ends,'
R16955 T23526 T23527 arg1Of ends,of
R16956 T23531 T23532 arg1Of −189,and
R16957 T23533 T23532 arg2Of −87,and
R16958 T23535 T23527 arg2Of constructs,of
R16959 T23535 T23528 arg1Of constructs,the
R16960 T23535 T23529 arg1Of constructs,−539
R16961 T23535 T23530 arg1Of constructs,","
R16962 T23535 T23531 arg1Of constructs,−189
R16963 T23535 T23533 arg1Of constructs,−87
R16964 T23535 T23534 arg1Of constructs,reporter
R16965 T23538 T23536 arg2Of shown,are
R16966 T23538 T23537 arg1Of shown,also

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T23418 486-514 Protein denotes purine box binding protein 1
T23417 478-482 Protein denotes PU.1
T23416 470-476 Protein denotes POU2F1
T23415 439-469 Protein denotes octamer transcription factor 1
T23414 431-435 Protein denotes Oct1
T23413 290-298 Protein denotes SerpinB2
T23412 128-136 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T23561 497-514 http://www.uniprot.org/uniprot/Q9UFW8 denotes binding protein 1
T23560 497-514 http://www.uniprot.org/uniprot/Q13541 denotes binding protein 1
T23559 497-514 http://www.uniprot.org/uniprot/Q86VP1 denotes binding protein 1
T23558 497-514 http://www.uniprot.org/uniprot/O00560 denotes binding protein 1
T23557 478-482 http://www.uniprot.org/uniprot/P17947 denotes PU.1
T23556 335-357 http://www.uniprot.org/uniprot/P10145 denotes 1 =  activator protein
T23555 335-357 http://www.uniprot.org/uniprot/P05412 denotes 1 =  activator protein
T23554 290-298 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T23553 128-136 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

UBERON-AE

Id Subject Object Predicate Lexical cue
T23397 487-493 http://purl.obolibrary.org/obo/UBERON_0001088 denotes urine
T23396 284-290 http://purl.obolibrary.org/obo/UBERON_0001088 denotes urine

GO-BP

Id Subject Object Predicate Lexical cue
T23421 529-542 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T23420 447-460 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T23419 408-421 http://purl.obolibrary.org/obo/GO_0051591 denotes cAMP response

GO-MF

Id Subject Object Predicate Lexical cue
T23427 497-514 http://purl.obolibrary.org/obo/GO_0008157 denotes binding protein 1
T23426 497-512 http://purl.obolibrary.org/obo/GO_0005515 denotes binding protein
T23425 385-400 http://purl.obolibrary.org/obo/GO_0005515 denotes binding protein
T23424 497-504 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T23423 385-392 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T23422 376-392 http://purl.obolibrary.org/obo/GO_0035326 denotes enhancer binding

GO-CC

Id Subject Object Predicate Lexical cue
T23428 335-357 http://purl.obolibrary.org/obo/GO_0035976 denotes 1 =  activator protein

sentences

Id Subject Object Predicate Lexical cue
T23404 616-705 Sentence denotes The location of the 5' ends of the −539, −189 and −87 reporter constructs are also shown.
T23403 516-615 Sentence denotes The putative transcription initiation site (tis) is indicated and exon 1 is presented in uppercase.
T23402 332-515 Sentence denotes AP-1 =  activator protein 1; C/EBP =  CCAAT enhancer binding protein; CRE = cAMP response element; Oct1 =  octamer transcription factor 1/POU2F1; PU.1 =  purine box binding protein 1.
T23401 231-331 Sentence denotes Cis-acting elements conserved between the human and murine SerpinB2 promoters are boxed and labeled.
T23400 155-230 Sentence denotes Mouse and human nucleotide sequences were aligned using Clustal W software.
T23399 146-154 Sentence denotes −563/−1.
T23398 44-145 Sentence denotes Potential cis-acting regulatory elements in the LPS responsive region of the murine SerpinB2 promoter
T151 0-145 Sentence denotes 10.1371/journal.pone.0057855.g003 Figure 3 Potential cis-acting regulatory elements in the LPS responsive region of the murine SerpinB2 promoter
T152 146-154 Sentence denotes −563/−1.
T153 155-230 Sentence denotes Mouse and human nucleotide sequences were aligned using Clustal W software.
T154 231-331 Sentence denotes Cis-acting elements conserved between the human and murine SerpinB2 promoters are boxed and labeled.
T155 332-515 Sentence denotes AP-1 =  activator protein 1; C/EBP =  CCAAT enhancer binding protein; CRE = cAMP response element; Oct1 =  octamer transcription factor 1/POU2F1; PU.1 =  purine box binding protein 1.
T156 516-615 Sentence denotes The putative transcription initiation site (tis) is indicated and exon 1 is presented in uppercase.
T157 616-705 Sentence denotes The location of the 5' ends of the −539, −189 and −87 reporter constructs are also shown.

simple1

Id Subject Object Predicate Lexical cue
T23435 486-514 Protein denotes purine box binding protein 1
T23434 478-482 Protein denotes PU.1
T23433 470-476 Protein denotes POU2F1
T23432 439-469 Protein denotes octamer transcription factor 1
T23431 431-435 Protein denotes Oct1
T23430 290-298 Protein denotes SerpinB2
T23429 128-136 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T23552 486-514 Protein denotes purine box binding protein 1
T23551 478-482 Protein denotes PU.1
T23550 470-476 Protein denotes POU2F1
T23549 439-469 Protein denotes octamer transcription factor 1
T23548 431-435 Protein denotes Oct1
T23547 290-298 Protein denotes SerpinB2
T23546 128-136 Protein denotes SerpinB2

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T23579 431-435 Protein denotes Oct1
T23578 290-298 Protein denotes SerpinB2
T23577 128-136 Protein denotes SerpinB2
T23583 486-514 Protein denotes purine box binding protein 1
T23582 478-482 Protein denotes PU.1
T23581 470-476 Protein denotes POU2F1
T23580 439-469 Protein denotes octamer transcription factor 1

DLUT931

Id Subject Object Predicate Lexical cue
T23569 385-392 Binding denotes binding
T23568 486-514 Protein denotes purine box binding protein 1
T23567 478-482 Protein denotes PU.1
T23566 470-476 Protein denotes POU2F1
T23565 439-469 Protein denotes octamer transcription factor 1
T23564 431-435 Protein denotes Oct1
T23563 290-298 Protein denotes SerpinB2
T23562 128-136 Protein denotes SerpinB2
R16967 T23565 T23569 themeOf octamer transcription factor 1,binding
R16968 T23565 T23569 themeOf octamer transcription factor 1,binding
R16969 T23566 T23569 themeOf POU2F1,binding
R16970 T23566 T23569 themeOf POU2F1,binding
R16971 T23568 T23569 themeOf purine box binding protein 1,binding
R16972 T23568 T23569 themeOf purine box binding protein 1,binding

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T23629 478-514 Protein denotes PU.1 =  purine box binding protein 1
T23628 332-357 Entity denotes AP-1 =  activator protein
T23627 439-476 Protein denotes octamer transcription factor 1/POU2F1
T23626 439-476 Protein denotes octamer transcription factor 1/POU2F1
T23625 516-564 Entity denotes The putative transcription initiation site (tis)
T23624 128-136 Protein denotes SerpinB2
T23623 171-181 Entity denotes nucleotide
T23622 478-483 Protein denotes PU.1 
T23621 408-412 Protein denotes cAMP
T23620 283-308 Entity denotes murine SerpinB2 promoters
T23619 332-357 Protein denotes AP-1 =  activator protein
T23618 470-476 Protein denotes POU2F1
T23617 332-337 Protein denotes AP-1 
T23616 402-476 Protein denotes CRE = cAMP response element; Oct1 =  octamer transcription factor 1/POU2F1
T23615 582-588 Entity denotes exon 1
T23614 231-234 Protein denotes Cis
T23613 290-298 Protein denotes SerpinB2
T23612 402-406 Protein denotes CRE 
T23611 361-367 Protein denotes C/EBP 
T23610 211-229 Entity denotes Clustal W software
T23609 92-95 Entity denotes LPS
T23608 114-145 Entity denotes of the murine SerpinB2 promoter
R16981 T23608 T23624 partOf of the murine SerpinB2 promoter,SerpinB2
R16982 T23620 T23613 partOf murine SerpinB2 promoters,SerpinB2

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T23595 337-338 Negative_regulation denotes =
T23594 478-514 Protein denotes PU.1 =  purine box binding protein 1
T23593 470-476 Protein denotes POU2F1
T23592 431-469 Protein denotes Oct1 =  octamer transcription factor 1
T23591 370-400 Protein denotes CCAAT enhancer binding protein
T23590 361-366 Protein denotes C/EBP
T23589 340-359 Protein denotes activator protein 1
T23588 332-336 Protein denotes AP-1
T23587 283-308 Protein denotes murine SerpinB2 promoters
T23586 96-106 Regulation denotes responsive
T23585 107-113 Gene_expression denotes region
T23584 121-145 Protein denotes murine SerpinB2 promoter
R16973 T23584 T23585 themeOf murine SerpinB2 promoter,region
R16974 T23585 T23586 themeOf region,responsive
R16975 T23588 T23595 causeOf AP-1,=
R16976 T23589 T23595 themeOf activator protein 1,=

testone

Id Subject Object Predicate Lexical cue
T23381 486-514 Protein denotes purine box binding protein 1
T23380 478-482 Protein denotes PU.1
T23379 470-476 Protein denotes POU2F1
T23378 439-469 Protein denotes octamer transcription factor 1
T23377 431-435 Protein denotes Oct1
T23376 290-298 Protein denotes SerpinB2
T23375 128-136 Protein denotes SerpinB2

test3

Id Subject Object Predicate Lexical cue
T23395 486-514 Protein denotes purine box binding protein 1
T23394 478-485 Protein denotes PU.1 = 
T23393 470-476 Protein denotes POU2F1
T23392 439-469 Protein denotes octamer transcription factor 1
T23391 431-438 Protein denotes Oct1 = 
T23390 290-298 Protein denotes SerpinB2
T23389 128-136 Protein denotes SerpinB2
T23388 486-514 Protein denotes purine box binding protein 1
T23387 478-482 Protein denotes PU.1
T23386 470-476 Protein denotes POU2F1
T23385 439-469 Protein denotes octamer transcription factor 1
T23384 431-435 Protein denotes Oct1
T23383 290-298 Protein denotes SerpinB2
T23382 128-136 Protein denotes SerpinB2
R16859 T23393 T23392 equivalentTo POU2F1,octamer transcription factor 1