PMC:3589482 / 22841-23030
Annnotations
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T11170","span":{"begin":188,"end":189},"obj":"."},{"id":"T11169","span":{"begin":187,"end":188},"obj":"NNP"},{"id":"T11168","span":{"begin":185,"end":187},"obj":"CD"},{"id":"T11167","span":{"begin":184,"end":185},"obj":"NNP"},{"id":"T11166","span":{"begin":182,"end":183},"obj":":"},{"id":"T11165","span":{"begin":181,"end":182},"obj":"NNP"},{"id":"T11164","span":{"begin":179,"end":181},"obj":"CD"},{"id":"T11163","span":{"begin":178,"end":179},"obj":"NNP"},{"id":"T11162","span":{"begin":173,"end":177},"obj":"NN"},{"id":"T11161","span":{"begin":164,"end":172},"obj":"NNP"},{"id":"T11160","span":{"begin":158,"end":163},"obj":"JJ"},{"id":"T11159","span":{"begin":154,"end":157},"obj":"DT"},{"id":"T11158","span":{"begin":151,"end":153},"obj":"IN"},{"id":"T11157","span":{"begin":147,"end":150},"obj":"NN"},{"id":"T11156","span":{"begin":142,"end":146},"obj":"NNP"},{"id":"T11155","span":{"begin":138,"end":141},"obj":"DT"},{"id":"T11154","span":{"begin":135,"end":137},"obj":"IN"},{"id":"T11153","span":{"begin":126,"end":134},"obj":"NN"},{"id":"T11152","span":{"begin":122,"end":125},"obj":"DT"},{"id":"T11151","span":{"begin":119,"end":121},"obj":"TO"},{"id":"T11150","span":{"begin":111,"end":118},"obj":"JJ"},{"id":"T11149","span":{"begin":109,"end":110},"obj":","},{"id":"T11148","span":{"begin":105,"end":109},"obj":"NN"},{"id":"T11147","span":{"begin":94,"end":104},"obj":"NN"},{"id":"T11146","span":{"begin":80,"end":93},"obj":"NN"},{"id":"T11145","span":{"begin":76,"end":79},"obj":"DT"},{"id":"T11144","span":{"begin":71,"end":75},"obj":"IN"},{"id":"T11143","span":{"begin":62,"end":70},"obj":"RB"},{"id":"T11142","span":{"begin":57,"end":61},"obj":"CD"},{"id":"T11141","span":{"begin":54,"end":56},"obj":"TO"},{"id":"T11140","span":{"begin":51,"end":53},"obj":"CD"},{"id":"T11139","span":{"begin":43,"end":50},"obj":"VBN"},{"id":"T11138","span":{"begin":40,"end":42},"obj":"VBZ"},{"id":"T11137","span":{"begin":31,"end":39},"obj":"NN"},{"id":"T11136","span":{"begin":21,"end":30},"obj":"NN"},{"id":"T11135","span":{"begin":16,"end":20},"obj":"NNP"},{"id":"T11134","span":{"begin":14,"end":15},"obj":"DT"},{"id":"T11133","span":{"begin":12,"end":13},"obj":","},{"id":"T11132","span":{"begin":0,"end":12},"obj":"RB"}],"relations":[{"id":"R8178","pred":"advmod","subj":"T11132","obj":"T11139"},{"id":"R8179","pred":"punct","subj":"T11133","obj":"T11139"},{"id":"R8180","pred":"det","subj":"T11134","obj":"T11137"},{"id":"R8181","pred":"compound","subj":"T11135","obj":"T11136"},{"id":"R8182","pred":"compound","subj":"T11136","obj":"T11137"},{"id":"R8183","pred":"nsubjpass","subj":"T11137","obj":"T11139"},{"id":"R8184","pred":"auxpass","subj":"T11138","obj":"T11139"},{"id":"R8185","pred":"ROOT","subj":"T11139","obj":"T11139"},{"id":"R8186","pred":"dobj","subj":"T11140","obj":"T11139"},{"id":"R8187","pred":"prep","subj":"T11141","obj":"T11140"},{"id":"R8188","pred":"pobj","subj":"T11142","obj":"T11141"},{"id":"R8189","pred":"advmod","subj":"T11143","obj":"T11142"},{"id":"R8190","pred":"prep","subj":"T11144","obj":"T11143"},{"id":"R8191","pred":"det","subj":"T11145","obj":"T11148"},{"id":"R8192","pred":"compound","subj":"T11146","obj":"T11147"},{"id":"R8193","pred":"compound","subj":"T11147","obj":"T11148"},{"id":"R8194","pred":"pobj","subj":"T11148","obj":"T11144"},{"id":"R8195","pred":"punct","subj":"T11149","obj":"T11148"},{"id":"R8196","pred":"amod","subj":"T11150","obj":"T11148"},{"id":"R8197","pred":"prep","subj":"T11151","obj":"T11150"},{"id":"R8198","pred":"det","subj":"T11152","obj":"T11153"},{"id":"R8199","pred":"pobj","subj":"T11153","obj":"T11151"},{"id":"R8200","pred":"prep","subj":"T11154","obj":"T11153"},{"id":"R8201","pred":"det","subj":"T11155","obj":"T11157"},{"id":"R8202","pred":"compound","subj":"T11156","obj":"T11157"},{"id":"R8203","pred":"pobj","subj":"T11157","obj":"T11154"},{"id":"R8204","pred":"prep","subj":"T11158","obj":"T11157"},{"id":"R8205","pred":"det","subj":"T11159","obj":"T11162"},{"id":"R8206","pred":"amod","subj":"T11160","obj":"T11162"},{"id":"R8207","pred":"compound","subj":"T11161","obj":"T11162"},{"id":"R8208","pred":"pobj","subj":"T11162","obj":"T11158"},{"id":"R8209","pred":"nmod","subj":"T11163","obj":"T11165"},{"id":"R8210","pred":"nummod","subj":"T11164","obj":"T11165"},{"id":"R8211","pred":"appos","subj":"T11165","obj":"T11150"},{"id":"R8212","pred":"punct","subj":"T11166","obj":"T11165"},{"id":"R8213","pred":"conj","subj":"T11167","obj":"T11165"},{"id":"R8214","pred":"nummod","subj":"T11168","obj":"T11169"},{"id":"R8215","pred":"conj","subj":"T11169","obj":"T11165"},{"id":"R8216","pred":"punct","subj":"T11170","obj":"T11139"}],"text":"Specifically, a TATA consensus sequence is located 23 to 29bp upstream from the transcription initiation site, similar to the position of the TATA box of the human SERPINB2 gene [53]; [54]."}
2_test
{"project":"2_test","denotations":[{"id":"23472114-2303256-87899180","span":{"begin":185,"end":187},"obj":"2303256"},{"id":"T35910","span":{"begin":185,"end":187},"obj":"2303256"}],"text":"Specifically, a TATA consensus sequence is located 23 to 29bp upstream from the transcription initiation site, similar to the position of the TATA box of the human SERPINB2 gene [53]; [54]."}
pmc-enju-pas
{"project":"pmc-enju-pas","denotations":[{"id":"T10648","span":{"begin":187,"end":188},"obj":"-RRB-"},{"id":"T10647","span":{"begin":185,"end":187},"obj":"CD"},{"id":"T10646","span":{"begin":184,"end":185},"obj":"-LRB-"},{"id":"T10645","span":{"begin":182,"end":183},"obj":"-COLON-"},{"id":"T10644","span":{"begin":181,"end":182},"obj":"-RRB-"},{"id":"T10643","span":{"begin":179,"end":181},"obj":"CD"},{"id":"T10642","span":{"begin":178,"end":179},"obj":"-LRB-"},{"id":"T10641","span":{"begin":173,"end":177},"obj":"NN"},{"id":"T10640","span":{"begin":164,"end":172},"obj":"NN"},{"id":"T10639","span":{"begin":158,"end":163},"obj":"JJ"},{"id":"T10638","span":{"begin":154,"end":157},"obj":"DT"},{"id":"T10637","span":{"begin":151,"end":153},"obj":"IN"},{"id":"T10636","span":{"begin":147,"end":150},"obj":"NN"},{"id":"T10635","span":{"begin":142,"end":146},"obj":"NN"},{"id":"T10634","span":{"begin":138,"end":141},"obj":"DT"},{"id":"T10633","span":{"begin":135,"end":137},"obj":"IN"},{"id":"T10632","span":{"begin":126,"end":134},"obj":"NN"},{"id":"T10631","span":{"begin":122,"end":125},"obj":"DT"},{"id":"T10630","span":{"begin":119,"end":121},"obj":"TO"},{"id":"T10629","span":{"begin":111,"end":118},"obj":"JJ"},{"id":"T10628","span":{"begin":109,"end":110},"obj":"-COMMA-"},{"id":"T10627","span":{"begin":105,"end":109},"obj":"NN"},{"id":"T10626","span":{"begin":94,"end":104},"obj":"NN"},{"id":"T10625","span":{"begin":80,"end":93},"obj":"NN"},{"id":"T10624","span":{"begin":76,"end":79},"obj":"DT"},{"id":"T10623","span":{"begin":71,"end":75},"obj":"IN"},{"id":"T10622","span":{"begin":62,"end":70},"obj":"RB"},{"id":"T10621","span":{"begin":57,"end":61},"obj":"VB"},{"id":"T10620","span":{"begin":54,"end":56},"obj":"TO"},{"id":"T10619","span":{"begin":51,"end":53},"obj":"CD"},{"id":"T10618","span":{"begin":43,"end":50},"obj":"JJ"},{"id":"T10617","span":{"begin":40,"end":42},"obj":"VB"},{"id":"T10616","span":{"begin":31,"end":39},"obj":"NN"},{"id":"T10615","span":{"begin":21,"end":30},"obj":"NN"},{"id":"T10614","span":{"begin":16,"end":20},"obj":"NN"},{"id":"T10613","span":{"begin":14,"end":15},"obj":"DT"},{"id":"T10612","span":{"begin":12,"end":13},"obj":"-COMMA-"},{"id":"T10611","span":{"begin":0,"end":12},"obj":"RB"}],"relations":[{"id":"R7779","pred":"arg1Of","subj":"T10616","obj":"T10613"},{"id":"R7780","pred":"arg1Of","subj":"T10616","obj":"T10614"},{"id":"R7781","pred":"arg1Of","subj":"T10616","obj":"T10615"},{"id":"R7782","pred":"arg1Of","subj":"T10616","obj":"T10617"},{"id":"R7783","pred":"arg1Of","subj":"T10616","obj":"T10618"},{"id":"R7784","pred":"arg1Of","subj":"T10617","obj":"T10611"},{"id":"R7785","pred":"arg1Of","subj":"T10617","obj":"T10612"},{"id":"R7786","pred":"arg1Of","subj":"T10617","obj":"T10642"},{"id":"R7787","pred":"arg1Of","subj":"T10617","obj":"T10645"},{"id":"R7788","pred":"arg1Of","subj":"T10617","obj":"T10646"},{"id":"R7789","pred":"arg2Of","subj":"T10618","obj":"T10617"},{"id":"R7790","pred":"arg1Of","subj":"T10618","obj":"T10619"},{"id":"R7791","pred":"modOf","subj":"T10619","obj":"T10620"},{"id":"R7792","pred":"arg1Of","subj":"T10619","obj":"T10621"},{"id":"R7793","pred":"arg1Of","subj":"T10619","obj":"T10637"},{"id":"R7794","pred":"arg1Of","subj":"T10621","obj":"T10620"},{"id":"R7795","pred":"arg1Of","subj":"T10621","obj":"T10622"},{"id":"R7796","pred":"arg1Of","subj":"T10621","obj":"T10623"},{"id":"R7797","pred":"arg2Of","subj":"T10627","obj":"T10623"},{"id":"R7798","pred":"arg1Of","subj":"T10627","obj":"T10624"},{"id":"R7799","pred":"arg1Of","subj":"T10627","obj":"T10625"},{"id":"R7800","pred":"arg1Of","subj":"T10627","obj":"T10626"},{"id":"R7801","pred":"arg1Of","subj":"T10627","obj":"T10628"},{"id":"R7802","pred":"arg1Of","subj":"T10627","obj":"T10629"},{"id":"R7803","pred":"arg1Of","subj":"T10629","obj":"T10630"},{"id":"R7804","pred":"arg2Of","subj":"T10632","obj":"T10630"},{"id":"R7805","pred":"arg1Of","subj":"T10632","obj":"T10631"},{"id":"R7806","pred":"arg1Of","subj":"T10632","obj":"T10633"},{"id":"R7807","pred":"arg2Of","subj":"T10636","obj":"T10633"},{"id":"R7808","pred":"arg1Of","subj":"T10636","obj":"T10634"},{"id":"R7809","pred":"arg1Of","subj":"T10636","obj":"T10635"},{"id":"R7810","pred":"arg2Of","subj":"T10641","obj":"T10637"},{"id":"R7811","pred":"arg1Of","subj":"T10641","obj":"T10638"},{"id":"R7812","pred":"arg1Of","subj":"T10641","obj":"T10639"},{"id":"R7813","pred":"arg1Of","subj":"T10641","obj":"T10640"},{"id":"R7814","pred":"arg2Of","subj":"T10643","obj":"T10642"},{"id":"R7815","pred":"arg3Of","subj":"T10644","obj":"T10642"},{"id":"R7816","pred":"arg2Of","subj":"T10647","obj":"T10646"},{"id":"R7817","pred":"arg3Of","subj":"T10648","obj":"T10646"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"Specifically, a TATA consensus sequence is located 23 to 29bp upstream from the transcription initiation site, similar to the position of the TATA box of the human SERPINB2 gene [53]; [54]."}
bionlp-st-ge-2016-test-proteins
{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T10425","span":{"begin":164,"end":172},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Specifically, a TATA consensus sequence is located 23 to 29bp upstream from the transcription initiation site, similar to the position of the TATA box of the human SERPINB2 gene [53]; [54]."}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T10845","span":{"begin":164,"end":172},"obj":"http://www.uniprot.org/uniprot/P05120"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Specifically, a TATA consensus sequence is located 23 to 29bp upstream from the transcription initiation site, similar to the position of the TATA box of the human SERPINB2 gene [53]; [54]."}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T10431","span":{"begin":80,"end":93},"obj":"http://purl.obolibrary.org/obo/GO_0006351"}],"text":"Specifically, a TATA consensus sequence is located 23 to 29bp upstream from the transcription initiation site, similar to the position of the TATA box of the human SERPINB2 gene [53]; [54]."}
sentences
{"project":"sentences","denotations":[{"id":"T10395","span":{"begin":0,"end":189},"obj":"Sentence"},{"id":"T146","span":{"begin":0,"end":189},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Specifically, a TATA consensus sequence is located 23 to 29bp upstream from the transcription initiation site, similar to the position of the TATA box of the human SERPINB2 gene [53]; [54]."}
simple1
{"project":"simple1","denotations":[{"id":"T10459","span":{"begin":164,"end":172},"obj":"Protein"}],"text":"Specifically, a TATA consensus sequence is located 23 to 29bp upstream from the transcription initiation site, similar to the position of the TATA box of the human SERPINB2 gene [53]; [54]."}
BioNLP16_DUT
{"project":"BioNLP16_DUT","denotations":[{"id":"T10829","span":{"begin":164,"end":172},"obj":"Protein"}],"text":"Specifically, a TATA consensus sequence is located 23 to 29bp upstream from the transcription initiation site, similar to the position of the TATA box of the human SERPINB2 gene [53]; [54]."}
BioNLP16_Messiy
{"project":"BioNLP16_Messiy","denotations":[{"id":"T10884","span":{"begin":164,"end":172},"obj":"Protein"}],"text":"Specifically, a TATA consensus sequence is located 23 to 29bp upstream from the transcription initiation site, similar to the position of the TATA box of the human SERPINB2 gene [53]; [54]."}
DLUT931
{"project":"DLUT931","denotations":[{"id":"T10868","span":{"begin":164,"end":172},"obj":"Protein"}],"text":"Specifically, a TATA consensus sequence is located 23 to 29bp upstream from the transcription initiation site, similar to the position of the TATA box of the human SERPINB2 gene [53]; [54]."}
bionlp-st-ge-2016-test-ihmc
{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T10974","span":{"begin":164,"end":172},"obj":"Protein"},{"id":"T10973","span":{"begin":76,"end":137},"obj":"Entity"},{"id":"T10944","span":{"begin":138,"end":182},"obj":"Entity"},{"id":"T10938","span":{"begin":151,"end":182},"obj":"Protein"}],"text":"Specifically, a TATA consensus sequence is located 23 to 29bp upstream from the transcription initiation site, similar to the position of the TATA box of the human SERPINB2 gene [53]; [54]."}
testone
{"project":"testone","denotations":[{"id":"T10358","span":{"begin":164,"end":172},"obj":"Protein"}],"text":"Specifically, a TATA consensus sequence is located 23 to 29bp upstream from the transcription initiation site, similar to the position of the TATA box of the human SERPINB2 gene [53]; [54]."}
test3
{"project":"test3","denotations":[{"id":"T10383","span":{"begin":164,"end":172},"obj":"Protein"},{"id":"T10369","span":{"begin":164,"end":172},"obj":"Protein"}],"text":"Specifically, a TATA consensus sequence is located 23 to 29bp upstream from the transcription initiation site, similar to the position of the TATA box of the human SERPINB2 gene [53]; [54]."}