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PMC:3589482 / 22841-23030 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T11170 188-189 . denotes .
T11169 187-188 NNP denotes ]
T11168 185-187 CD denotes 54
T11167 184-185 NNP denotes [
T11166 182-183 : denotes ;
T11165 181-182 NNP denotes ]
T11164 179-181 CD denotes 53
T11163 178-179 NNP denotes [
T11162 173-177 NN denotes gene
T11161 164-172 NNP denotes SERPINB2
T11160 158-163 JJ denotes human
T11159 154-157 DT denotes the
T11158 151-153 IN denotes of
T11157 147-150 NN denotes box
T11156 142-146 NNP denotes TATA
T11155 138-141 DT denotes the
T11154 135-137 IN denotes of
T11153 126-134 NN denotes position
T11152 122-125 DT denotes the
T11151 119-121 TO denotes to
T11150 111-118 JJ denotes similar
T11149 109-110 , denotes ,
T11148 105-109 NN denotes site
T11147 94-104 NN denotes initiation
T11146 80-93 NN denotes transcription
T11145 76-79 DT denotes the
T11144 71-75 IN denotes from
T11143 62-70 RB denotes upstream
T11142 57-61 CD denotes 29bp
T11141 54-56 TO denotes to
T11140 51-53 CD denotes 23
T11139 43-50 VBN denotes located
T11138 40-42 VBZ denotes is
T11137 31-39 NN denotes sequence
T11136 21-30 NN denotes consensus
T11135 16-20 NNP denotes TATA
T11134 14-15 DT denotes a
T11133 12-13 , denotes ,
T11132 0-12 RB denotes Specifically
R8178 T11132 T11139 advmod Specifically,located
R8179 T11133 T11139 punct ",",located
R8180 T11134 T11137 det a,sequence
R8181 T11135 T11136 compound TATA,consensus
R8182 T11136 T11137 compound consensus,sequence
R8183 T11137 T11139 nsubjpass sequence,located
R8184 T11138 T11139 auxpass is,located
R8185 T11139 T11139 ROOT located,located
R8186 T11140 T11139 dobj 23,located
R8187 T11141 T11140 prep to,23
R8188 T11142 T11141 pobj 29bp,to
R8189 T11143 T11142 advmod upstream,29bp
R8190 T11144 T11143 prep from,upstream
R8191 T11145 T11148 det the,site
R8192 T11146 T11147 compound transcription,initiation
R8193 T11147 T11148 compound initiation,site
R8194 T11148 T11144 pobj site,from
R8195 T11149 T11148 punct ",",site
R8196 T11150 T11148 amod similar,site
R8197 T11151 T11150 prep to,similar
R8198 T11152 T11153 det the,position
R8199 T11153 T11151 pobj position,to
R8200 T11154 T11153 prep of,position
R8201 T11155 T11157 det the,box
R8202 T11156 T11157 compound TATA,box
R8203 T11157 T11154 pobj box,of
R8204 T11158 T11157 prep of,box
R8205 T11159 T11162 det the,gene
R8206 T11160 T11162 amod human,gene
R8207 T11161 T11162 compound SERPINB2,gene
R8208 T11162 T11158 pobj gene,of
R8209 T11163 T11165 nmod [,]
R8210 T11164 T11165 nummod 53,]
R8211 T11165 T11150 appos ],similar
R8212 T11166 T11165 punct ;,]
R8213 T11167 T11165 conj [,]
R8214 T11168 T11169 nummod 54,]
R8215 T11169 T11165 conj ],]
R8216 T11170 T11139 punct .,located

2_test

Id Subject Object Predicate Lexical cue
23472114-2303256-87899180 185-187 2303256 denotes 54
T35910 185-187 2303256 denotes 54

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T10648 187-188 -RRB- denotes ]
T10647 185-187 CD denotes 54
T10646 184-185 -LRB- denotes [
T10645 182-183 -COLON- denotes ;
T10644 181-182 -RRB- denotes ]
T10643 179-181 CD denotes 53
T10642 178-179 -LRB- denotes [
T10641 173-177 NN denotes gene
T10640 164-172 NN denotes SERPINB2
T10639 158-163 JJ denotes human
T10638 154-157 DT denotes the
T10637 151-153 IN denotes of
T10636 147-150 NN denotes box
T10635 142-146 NN denotes TATA
T10634 138-141 DT denotes the
T10633 135-137 IN denotes of
T10632 126-134 NN denotes position
T10631 122-125 DT denotes the
T10630 119-121 TO denotes to
T10629 111-118 JJ denotes similar
T10628 109-110 -COMMA- denotes ,
T10627 105-109 NN denotes site
T10626 94-104 NN denotes initiation
T10625 80-93 NN denotes transcription
T10624 76-79 DT denotes the
T10623 71-75 IN denotes from
T10622 62-70 RB denotes upstream
T10621 57-61 VB denotes 29bp
T10620 54-56 TO denotes to
T10619 51-53 CD denotes 23
T10618 43-50 JJ denotes located
T10617 40-42 VB denotes is
T10616 31-39 NN denotes sequence
T10615 21-30 NN denotes consensus
T10614 16-20 NN denotes TATA
T10613 14-15 DT denotes a
T10612 12-13 -COMMA- denotes ,
T10611 0-12 RB denotes Specifically
R7779 T10616 T10613 arg1Of sequence,a
R7780 T10616 T10614 arg1Of sequence,TATA
R7781 T10616 T10615 arg1Of sequence,consensus
R7782 T10616 T10617 arg1Of sequence,is
R7783 T10616 T10618 arg1Of sequence,located
R7784 T10617 T10611 arg1Of is,Specifically
R7785 T10617 T10612 arg1Of is,","
R7786 T10617 T10642 arg1Of is,[
R7787 T10617 T10645 arg1Of is,;
R7788 T10617 T10646 arg1Of is,[
R7789 T10618 T10617 arg2Of located,is
R7790 T10618 T10619 arg1Of located,23
R7791 T10619 T10620 modOf 23,to
R7792 T10619 T10621 arg1Of 23,29bp
R7793 T10619 T10637 arg1Of 23,of
R7794 T10621 T10620 arg1Of 29bp,to
R7795 T10621 T10622 arg1Of 29bp,upstream
R7796 T10621 T10623 arg1Of 29bp,from
R7797 T10627 T10623 arg2Of site,from
R7798 T10627 T10624 arg1Of site,the
R7799 T10627 T10625 arg1Of site,transcription
R7800 T10627 T10626 arg1Of site,initiation
R7801 T10627 T10628 arg1Of site,","
R7802 T10627 T10629 arg1Of site,similar
R7803 T10629 T10630 arg1Of similar,to
R7804 T10632 T10630 arg2Of position,to
R7805 T10632 T10631 arg1Of position,the
R7806 T10632 T10633 arg1Of position,of
R7807 T10636 T10633 arg2Of box,of
R7808 T10636 T10634 arg1Of box,the
R7809 T10636 T10635 arg1Of box,TATA
R7810 T10641 T10637 arg2Of gene,of
R7811 T10641 T10638 arg1Of gene,the
R7812 T10641 T10639 arg1Of gene,human
R7813 T10641 T10640 arg1Of gene,SERPINB2
R7814 T10643 T10642 arg2Of 53,[
R7815 T10644 T10642 arg3Of ],[
R7816 T10647 T10646 arg2Of 54,[
R7817 T10648 T10646 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T10425 164-172 Protein denotes SERPINB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T10845 164-172 http://www.uniprot.org/uniprot/P05120 denotes SERPINB2

GO-BP

Id Subject Object Predicate Lexical cue
T10431 80-93 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

sentences

Id Subject Object Predicate Lexical cue
T10395 0-189 Sentence denotes Specifically, a TATA consensus sequence is located 23 to 29bp upstream from the transcription initiation site, similar to the position of the TATA box of the human SERPINB2 gene [53]; [54].
T146 0-189 Sentence denotes Specifically, a TATA consensus sequence is located 23 to 29bp upstream from the transcription initiation site, similar to the position of the TATA box of the human SERPINB2 gene [53]; [54].

simple1

Id Subject Object Predicate Lexical cue
T10459 164-172 Protein denotes SERPINB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T10829 164-172 Protein denotes SERPINB2

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T10884 164-172 Protein denotes SERPINB2

DLUT931

Id Subject Object Predicate Lexical cue
T10868 164-172 Protein denotes SERPINB2

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10974 164-172 Protein denotes SERPINB2
T10973 76-137 Entity denotes the transcription initiation site, similar to the position of
T10944 138-182 Entity denotes the TATA box of the human SERPINB2 gene [53]
T10938 151-182 Protein denotes of the human SERPINB2 gene [53]

testone

Id Subject Object Predicate Lexical cue
T10358 164-172 Protein denotes SERPINB2

test3

Id Subject Object Predicate Lexical cue
T10383 164-172 Protein denotes SERPINB2
T10369 164-172 Protein denotes SERPINB2