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PMC:3589482 / 21999-22188 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T11020 188-189 . denotes .
T11019 181-188 NNS denotes regions
T11018 172-180 NN denotes flanking
T11017 170-171 NN denotes ′
T11016 169-170 CD denotes 5
T11015 160-168 NN denotes SerpinB2
T11014 154-159 JJ denotes human
T11013 150-153 CC denotes and
T11012 143-149 NN denotes murine
T11011 139-142 DT denotes the
T11010 131-138 VBD denotes aligned
T11009 128-130 PRP denotes we
T11008 126-127 , denotes ,
T11007 123-126 NNP denotes LPS
T11006 120-122 TO denotes to
T11005 111-119 NN denotes response
T11004 107-110 DT denotes the
T11003 103-106 CC denotes and
T11002 98-102 NN denotes gene
T11001 89-97 NNP denotes SerpinB2
T11000 82-88 NN denotes murine
T10999 78-81 DT denotes the
T10998 75-77 IN denotes of
T10997 61-74 NN denotes transcription
T10996 53-60 VB denotes mediate
T10995 47-52 MD denotes might
T10994 42-46 WDT denotes that
T10993 33-41 NNS denotes elements
T10992 22-32 JJ denotes cis-acting
T10991 12-21 JJ denotes potential
T10990 8-11 IN denotes for
T10989 3-7 VB denotes look
T10988 0-2 TO denotes To
R8034 T10988 T10989 aux To,look
R8035 T10989 T11010 advcl look,aligned
R8036 T10990 T10989 prep for,look
R8037 T10991 T10993 amod potential,elements
R8038 T10992 T10993 amod cis-acting,elements
R8039 T10993 T10990 pobj elements,for
R8040 T10994 T10996 nsubj that,mediate
R8041 T10995 T10996 aux might,mediate
R8042 T10996 T10993 relcl mediate,elements
R8043 T10997 T10996 dobj transcription,mediate
R8044 T10998 T10997 prep of,transcription
R8045 T10999 T11002 det the,gene
R8046 T11000 T11002 compound murine,gene
R8047 T11001 T11002 compound SerpinB2,gene
R8048 T11002 T10998 pobj gene,of
R8049 T11003 T10997 cc and,transcription
R8050 T11004 T11005 det the,response
R8051 T11005 T10997 conj response,transcription
R8052 T11006 T11005 prep to,response
R8053 T11007 T11006 pobj LPS,to
R8054 T11008 T11010 punct ",",aligned
R8055 T11009 T11010 nsubj we,aligned
R8056 T11010 T11010 ROOT aligned,aligned
R8057 T11011 T11012 det the,murine
R8058 T11012 T11019 nmod murine,regions
R8059 T11013 T11012 cc and,murine
R8060 T11014 T11015 amod human,SerpinB2
R8061 T11015 T11012 conj SerpinB2,murine
R8062 T11016 T11019 nummod 5,regions
R8063 T11017 T11019 compound ′,regions
R8064 T11018 T11019 compound flanking,regions
R8065 T11019 T11010 dobj regions,aligned
R8066 T11020 T11010 punct .,aligned

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T10503 181-188 NN denotes regions
T10502 172-180 NN denotes flanking
T10501 169-171 NN denotes 5′
T10500 160-168 NN denotes SerpinB2
T10499 154-159 JJ denotes human
T10498 150-153 CC denotes and
T10497 143-149 JJ denotes murine
T10496 139-142 DT denotes the
T10495 131-138 VB denotes aligned
T10494 128-130 PRP denotes we
T10493 126-127 -COMMA- denotes ,
T10492 123-126 NN denotes LPS
T10491 120-122 TO denotes to
T10490 111-119 NN denotes response
T10489 107-110 DT denotes the
T10488 103-106 CC denotes and
T10487 98-102 NN denotes gene
T10486 89-97 NN denotes SerpinB2
T10485 82-88 JJ denotes murine
T10484 78-81 DT denotes the
T10483 75-77 IN denotes of
T10482 61-74 NN denotes transcription
T10481 53-60 VB denotes mediate
T10480 47-52 MD denotes might
T10479 42-46 WDT denotes that
T10478 33-41 NN denotes elements
T10477 22-32 JJ denotes cis-acting
T10476 12-21 JJ denotes potential
T10475 8-11 IN denotes for
T10474 3-7 VB denotes look
T10473 0-2 TO denotes To
R7640 T10474 T10473 arg1Of look,To
R7641 T10474 T10475 arg1Of look,for
R7642 T10478 T10475 arg2Of elements,for
R7643 T10478 T10476 arg1Of elements,potential
R7644 T10478 T10477 arg1Of elements,cis-acting
R7645 T10478 T10479 arg1Of elements,that
R7646 T10478 T10480 arg1Of elements,might
R7647 T10478 T10481 arg1Of elements,mediate
R7648 T10481 T10480 arg2Of mediate,might
R7649 T10482 T10483 arg1Of transcription,of
R7650 T10482 T10488 arg1Of transcription,and
R7651 T10487 T10483 arg2Of gene,of
R7652 T10487 T10484 arg1Of gene,the
R7653 T10487 T10485 arg1Of gene,murine
R7654 T10487 T10486 arg1Of gene,SerpinB2
R7655 T10488 T10481 arg2Of and,mediate
R7656 T10490 T10488 arg2Of response,and
R7657 T10490 T10489 arg1Of response,the
R7658 T10490 T10491 arg1Of response,to
R7659 T10492 T10491 arg2Of LPS,to
R7660 T10494 T10474 arg1Of we,look
R7661 T10494 T10495 arg1Of we,aligned
R7662 T10495 T10473 modOf aligned,To
R7663 T10495 T10493 arg1Of aligned,","
R7664 T10497 T10498 arg1Of murine,and
R7665 T10499 T10498 arg2Of human,and
R7666 T10503 T10495 arg2Of regions,aligned
R7667 T10503 T10496 arg1Of regions,the
R7668 T10503 T10497 arg1Of regions,murine
R7669 T10503 T10499 arg1Of regions,human
R7670 T10503 T10500 arg1Of regions,SerpinB2
R7671 T10503 T10501 arg1Of regions,5′
R7672 T10503 T10502 arg1Of regions,flanking

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T10421 160-168 Protein denotes SerpinB2
T10420 89-97 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T10841 160-168 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T10840 89-97 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T10432 111-126 http://purl.obolibrary.org/obo/GO_0032496 denotes response to LPS
T10429 61-74 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

sentences

Id Subject Object Predicate Lexical cue
T10390 0-189 Sentence denotes To look for potential cis-acting elements that might mediate transcription of the murine SerpinB2 gene and the response to LPS, we aligned the murine and human SerpinB2 5′ flanking regions.
T141 0-189 Sentence denotes To look for potential cis-acting elements that might mediate transcription of the murine SerpinB2 gene and the response to LPS, we aligned the murine and human SerpinB2 5′ flanking regions.

simple1

Id Subject Object Predicate Lexical cue
T10455 160-168 Protein denotes SerpinB2
T10454 89-97 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T10835 53-60 Positive_regulation denotes mediate
T10834 61-74 Transcription denotes transcription
T10833 111-119 Regulation denotes response
T10825 160-168 Protein denotes SerpinB2
T10824 89-97 Protein denotes SerpinB2
R7985 T10824 T10834 themeOf SerpinB2,transcription
R7986 T10824 T10833 themeOf SerpinB2,response
R7988 T10834 T10835 themeOf transcription,mediate

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T10889 53-60 Positive_regulation denotes mediate
T10888 61-74 Transcription denotes transcription
T10880 160-168 Protein denotes SerpinB2
T10879 89-97 Protein denotes SerpinB2
R8000 T10879 T10888 themeOf SerpinB2,transcription
R8004 T10888 T10889 themeOf transcription,mediate

DLUT931

Id Subject Object Predicate Lexical cue
T10873 53-60 Positive_regulation denotes mediate
T10872 61-74 Transcription denotes transcription
T10864 160-168 Protein denotes SerpinB2
T10863 89-97 Protein denotes SerpinB2
R7991 T10863 T10872 themeOf SerpinB2,transcription
R7997 T10872 T10873 themeOf transcription,mediate

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10972 89-97 Protein denotes SerpinB2
T10971 12-32 Protein denotes potential cis-acting
T10960 160-168 Protein denotes SerpinB2
T10943 78-102 Protein denotes the murine SerpinB2 gene

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T10898 53-60 Positive_regulation denotes mediate
T10897 61-74 Transcription denotes transcription
T10896 82-102 Protein denotes murine SerpinB2 gene
R8008 T10896 T10897 themeOf murine SerpinB2 gene,transcription
R8009 T10897 T10898 themeOf transcription,mediate

testone

Id Subject Object Predicate Lexical cue
T10354 160-168 Protein denotes SerpinB2
T10353 89-97 Protein denotes SerpinB2

test3

Id Subject Object Predicate Lexical cue
T10375 160-168 Protein denotes SerpinB2
T10374 89-97 Protein denotes SerpinB2
T10365 160-168 Protein denotes SerpinB2
T10364 89-97 Protein denotes SerpinB2