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PMC:3589482 / 19748-20014 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T10271 265-266 . denotes .
T10270 257-265 NN denotes deletion
T10269 252-256 DT denotes this
T10268 249-251 IN denotes by
T10267 240-248 VBN denotes affected
T10266 235-239 RBR denotes less
T10265 232-234 VBZ denotes is
T10264 228-231 NNP denotes PMA
T10263 225-227 TO denotes to
T10262 216-224 NN denotes promoter
T10261 207-215 NNP denotes SerpinB2
T10260 200-206 NN denotes murine
T10259 196-199 DT denotes the
T10258 193-195 IN denotes of
T10257 184-192 NN denotes response
T10256 180-183 DT denotes the
T10255 178-179 , denotes ,
T10254 171-178 RB denotes however
T10253 169-170 : denotes ;
T10252 166-169 CD denotes 189
T10251 165-166 CD denotes −
T10250 161-164 CC denotes and
T10249 157-160 CD denotes 539
T10248 156-157 CD denotes −
T10247 148-155 IN denotes between
T10246 141-147 NN denotes region
T10245 137-140 DT denotes the
T10244 134-136 IN denotes in
T10243 126-133 NN denotes element
T10242 117-125 NN denotes response
T10241 113-116 NNP denotes LPS
T10240 103-112 JJ denotes essential
T10239 100-102 DT denotes an
T10238 97-99 IN denotes of
T10237 88-96 NN denotes presence
T10236 84-87 DT denotes the
T10235 73-83 VBG denotes indicating
T10234 71-72 , denotes ,
T10233 63-71 NN denotes promoter
T10232 59-62 DT denotes the
T10231 56-58 IN denotes of
T10230 43-55 NN denotes LPS-response
T10229 39-42 DT denotes the
T10228 29-38 VBD denotes abolished
T10227 25-28 CD denotes 539
T10226 24-25 CD denotes −
T10225 17-23 IN denotes beyond
T10224 8-16 NN denotes deletion
T10223 0-7 JJ denotes Further
R7510 T10223 T10224 amod Further,deletion
R7511 T10224 T10228 nsubj deletion,abolished
R7512 T10225 T10224 prep beyond,deletion
R7513 T10226 T10225 pobj −,beyond
R7514 T10227 T10228 nsubj 539,abolished
R7515 T10228 T10265 ccomp abolished,is
R7516 T10229 T10230 det the,LPS-response
R7517 T10230 T10228 dobj LPS-response,abolished
R7518 T10231 T10230 prep of,LPS-response
R7519 T10232 T10233 det the,promoter
R7520 T10233 T10231 pobj promoter,of
R7521 T10234 T10228 punct ",",abolished
R7522 T10235 T10228 advcl indicating,abolished
R7523 T10236 T10237 det the,presence
R7524 T10237 T10235 dobj presence,indicating
R7525 T10238 T10237 prep of,presence
R7526 T10239 T10243 det an,element
R7527 T10240 T10243 amod essential,element
R7528 T10241 T10243 compound LPS,element
R7529 T10242 T10243 compound response,element
R7530 T10243 T10238 pobj element,of
R7531 T10244 T10243 prep in,element
R7532 T10245 T10246 det the,region
R7533 T10246 T10244 pobj region,in
R7534 T10247 T10237 prep between,presence
R7535 T10248 T10249 nummod −,539
R7536 T10249 T10247 pobj 539,between
R7537 T10250 T10249 cc and,539
R7538 T10251 T10249 conj −,539
R7539 T10252 T10249 conj 189,539
R7540 T10253 T10265 punct ;,is
R7541 T10254 T10265 advmod however,is
R7542 T10255 T10265 punct ",",is
R7543 T10256 T10257 det the,response
R7544 T10257 T10265 nsubj response,is
R7545 T10258 T10257 prep of,response
R7546 T10259 T10262 det the,promoter
R7547 T10260 T10262 compound murine,promoter
R7548 T10261 T10262 compound SerpinB2,promoter
R7549 T10262 T10258 pobj promoter,of
R7550 T10263 T10257 prep to,response
R7551 T10264 T10263 pobj PMA,to
R7552 T10265 T10265 ROOT is,is
R7553 T10266 T10267 advmod less,affected
R7554 T10267 T10265 acomp affected,is
R7555 T10268 T10267 prep by,affected
R7556 T10269 T10270 det this,deletion
R7557 T10270 T10268 pobj deletion,by
R7558 T10271 T10265 punct .,is

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9801 257-265 NN denotes deletion
T9800 252-256 DT denotes this
T9799 249-251 IN denotes by
T9798 240-248 VB denotes affected
T9797 235-239 RB denotes less
T9796 232-234 VB denotes is
T9795 228-231 NN denotes PMA
T9794 225-227 TO denotes to
T9793 216-224 NN denotes promoter
T9792 207-215 NN denotes SerpinB2
T9791 200-206 JJ denotes murine
T9790 196-199 DT denotes the
T9789 193-195 IN denotes of
T9788 184-192 NN denotes response
T9787 180-183 DT denotes the
T9786 178-179 -COMMA- denotes ,
T9785 171-178 RB denotes however
T9784 169-170 -COLON- denotes ;
T9783 165-169 CD denotes −189
T9782 161-164 CC denotes and
T9781 156-160 CD denotes −539
T9780 148-155 IN denotes between
T9779 141-147 NN denotes region
T9778 137-140 DT denotes the
T9777 134-136 IN denotes in
T9776 126-133 NN denotes element
T9775 117-125 NN denotes response
T9774 113-116 NN denotes LPS
T9773 103-112 JJ denotes essential
T9772 100-102 DT denotes an
T9771 97-99 IN denotes of
T9770 88-96 NN denotes presence
T9769 84-87 DT denotes the
T9768 73-83 VB denotes indicating
T9767 71-72 -COMMA- denotes ,
T9766 63-71 NN denotes promoter
T9765 59-62 DT denotes the
T9764 56-58 IN denotes of
T9763 43-55 NN denotes LPS-response
T9762 39-42 DT denotes the
T9761 29-38 VB denotes abolished
T9760 24-28 CD denotes −539
T9759 17-23 IN denotes beyond
T9758 8-16 NN denotes deletion
T9757 0-7 JJ denotes Further
R7161 T9758 T9757 arg1Of deletion,Further
R7162 T9758 T9759 arg1Of deletion,beyond
R7163 T9758 T9761 arg1Of deletion,abolished
R7164 T9760 T9759 arg2Of −539,beyond
R7165 T9761 T9767 arg1Of abolished,","
R7166 T9761 T9768 modOf abolished,indicating
R7167 T9761 T9784 arg1Of abolished,;
R7168 T9763 T9761 arg2Of LPS-response,abolished
R7169 T9763 T9762 arg1Of LPS-response,the
R7170 T9763 T9764 arg1Of LPS-response,of
R7171 T9766 T9764 arg2Of promoter,of
R7172 T9766 T9765 arg1Of promoter,the
R7173 T9770 T9768 arg2Of presence,indicating
R7174 T9770 T9769 arg1Of presence,the
R7175 T9770 T9771 arg1Of presence,of
R7176 T9776 T9771 arg2Of element,of
R7177 T9776 T9772 arg1Of element,an
R7178 T9776 T9773 arg1Of element,essential
R7179 T9776 T9774 arg1Of element,LPS
R7180 T9776 T9775 arg1Of element,response
R7181 T9776 T9777 arg1Of element,in
R7182 T9779 T9777 arg2Of region,in
R7183 T9779 T9778 arg1Of region,the
R7184 T9779 T9780 arg1Of region,between
R7185 T9781 T9782 arg1Of −539,and
R7186 T9782 T9780 arg2Of and,between
R7187 T9783 T9782 arg2Of −189,and
R7188 T9788 T9787 arg1Of response,the
R7189 T9788 T9789 arg1Of response,of
R7190 T9788 T9794 arg1Of response,to
R7191 T9788 T9796 arg1Of response,is
R7192 T9788 T9798 arg1Of response,affected
R7193 T9793 T9789 arg2Of promoter,of
R7194 T9793 T9790 arg1Of promoter,the
R7195 T9793 T9791 arg1Of promoter,murine
R7196 T9793 T9792 arg1Of promoter,SerpinB2
R7197 T9795 T9794 arg2Of PMA,to
R7198 T9796 T9784 arg2Of is,;
R7199 T9796 T9785 arg1Of is,however
R7200 T9796 T9786 arg1Of is,","
R7201 T9798 T9796 arg2Of affected,is
R7202 T9798 T9797 arg1Of affected,less
R7203 T9798 T9799 arg1Of affected,by
R7204 T9801 T9799 arg2Of deletion,by
R7205 T9801 T9800 arg1Of deletion,this

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T9525 8-16 Antecedent denotes deletion
T9524 252-265 Anaphor denotes this deletion
R6961 T9524 T9525 boundBy this deletion,deletion

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T9533 207-215 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9893 207-215 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T9545 113-125 http://purl.obolibrary.org/obo/GO_0032496 denotes LPS response
T9544 43-55 http://purl.obolibrary.org/obo/GO_0032496 denotes LPS-response

sentences

Id Subject Object Predicate Lexical cue
T9475 0-266 Sentence denotes Further deletion beyond −539 abolished the LPS-response of the promoter, indicating the presence of an essential LPS response element in the region between −539 and −189; however, the response of the murine SerpinB2 promoter to PMA is less affected by this deletion.
T128 0-266 Sentence denotes Further deletion beyond −539 abolished the LPS-response of the promoter, indicating the presence of an essential LPS response element in the region between −539 and −189; however, the response of the murine SerpinB2 promoter to PMA is less affected by this deletion.

simple1

Id Subject Object Predicate Lexical cue
T9561 207-215 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T9883 240-248 Regulation denotes affected
T9882 184-192 Positive_regulation denotes response
T9874 207-215 Protein denotes SerpinB2
R7268 T9874 T9882 themeOf SerpinB2,response
R7269 T9874 T9883 themeOf SerpinB2,affected
R7274 T9882 T9883 themeOf response,affected

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T9933 207-215 Protein denotes SerpinB2

DLUT931

Id Subject Object Predicate Lexical cue
T9913 240-248 Regulation denotes affected
T9907 207-215 Protein denotes SerpinB2
R7277 T9907 T9913 themeOf SerpinB2,affected

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10009 228-231 Entity denotes PMA
T10006 196-224 Entity denotes the murine SerpinB2 promoter
T9985 207-215 Protein denotes SerpinB2
T9983 113-116 Entity denotes LPS
T9979 39-72 Entity denotes the LPS-response of the promoter,
T9975 59-71 Entity denotes the promoter
R7304 T10006 T9985 partOf the murine SerpinB2 promoter,SerpinB2

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T9951 240-248 Regulation denotes affected
T9950 184-192 Positive_regulation denotes response
T9949 200-224 Protein denotes murine SerpinB2 promoter
R7286 T9949 T9950 themeOf murine SerpinB2 promoter,response
R7287 T9950 T9951 themeOf response,affected

testone

Id Subject Object Predicate Lexical cue
T9439 207-215 Protein denotes SerpinB2

test3

Id Subject Object Predicate Lexical cue
T9452 207-215 Protein denotes SerpinB2
T9463 207-215 Protein denotes SerpinB2