PMC:3589482 / 18126-18620 JSONTXT

{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T22652","span":{"begin":493,"end":494},"obj":"."},{"id":"T22651","span":{"begin":486,"end":493},"obj":"NN"},{"id":"T22650","span":{"begin":478,"end":485},"obj":"VBG"},{"id":"T22649","span":{"begin":476,"end":477},"obj":"DT"},{"id":"T22648","span":{"begin":473,"end":475},"obj":"IN"},{"id":"T22647","span":{"begin":467,"end":472},"obj":"NNP"},{"id":"T22646","span":{"begin":463,"end":466},"obj":"IN"},{"id":"T22645","span":{"begin":454,"end":462},"obj":"VBN"},{"id":"T22644","span":{"begin":450,"end":453},"obj":"VBD"},{"id":"T22643","span":{"begin":445,"end":449},"obj":"NNP"},{"id":"T22642","span":{"begin":443,"end":444},"obj":"."},{"id":"T22641","span":{"begin":436,"end":443},"obj":"VBZ"},{"id":"T22640","span":{"begin":431,"end":435},"obj":"NN"},{"id":"T22639","span":{"begin":425,"end":430},"obj":"JJ"},{"id":"T22638","span":{"begin":422,"end":424},"obj":"IN"},{"id":"T22637","span":{"begin":411,"end":421},"obj":"NN"},{"id":"T22636","span":{"begin":403,"end":410},"obj":"NN"},{"id":"T22635","span":{"begin":394,"end":402},"obj":"CD"},{"id":"T22634","span":{"begin":391,"end":393},"obj":"IN"},{"id":"T22633","span":{"begin":382,"end":390},"obj":"NN"},{"id":"T22632","span":{"begin":371,"end":381},"obj":"NNP"},{"id":"T22631","span":{"begin":369,"end":370},"obj":"-RRB-"},{"id":"T22630","span":{"begin":368,"end":369},"obj":"NNP"},{"id":"T22629","span":{"begin":367,"end":368},"obj":"-LRB-"},{"id":"T22628","span":{"begin":365,"end":366},"obj":"."},{"id":"T22627","span":{"begin":355,"end":365},"obj":"NN"},{"id":"T22626","span":{"begin":352,"end":354},"obj":"IN"},{"id":"T22625","span":{"begin":342,"end":351},"obj":"VBN"},{"id":"T22624","span":{"begin":330,"end":341},"obj":"NNS"},{"id":"T22623","span":{"begin":318,"end":329},"obj":"JJ"},{"id":"T22622","span":{"begin":314,"end":317},"obj":"CD"},{"id":"T22621","span":{"begin":308,"end":313},"obj":"JJS"},{"id":"T22596","span":{"begin":189,"end":192},"obj":"CD"},{"id":"T22595","span":{"begin":184,"end":188},"obj":"IN"},{"id":"T22594","span":{"begin":178,"end":183},"obj":"NNS"},{"id":"T22593","span":{"begin":168,"end":177},"obj":"JJ"},{"id":"T22592","span":{"begin":164,"end":167},"obj":"DT"},{"id":"T22591","span":{"begin":160,"end":163},"obj":"IN"},{"id":"T22590","span":{"begin":152,"end":159},"obj":"VBN"},{"id":"T22589","span":{"begin":147,"end":151},"obj":"VBD"},{"id":"T22588","span":{"begin":135,"end":146},"obj":"NNS"},{"id":"T22587","span":{"begin":132,"end":134},"obj":"CD"},{"id":"T22586","span":{"begin":126,"end":132},"obj":"CD"},{"id":"T22585","span":{"begin":124,"end":125},"obj":"."},{"id":"T22584","span":{"begin":119,"end":124},"obj":"NNS"},{"id":"T22583","span":{"begin":108,"end":118},"obj":"NN"},{"id":"T22582","span":{"begin":101,"end":107},"obj":"JJ"},{"id":"T22581","span":{"begin":98,"end":100},"obj":"IN"},{"id":"T22580","span":{"begin":87,"end":97},"obj":"NN"},{"id":"T22579","span":{"begin":79,"end":86},"obj":"NN"},{"id":"T22578","span":{"begin":75,"end":78},"obj":"CC"},{"id":"T22577","span":{"begin":70,"end":74},"obj":"NNP"},{"id":"T22576","span":{"begin":61,"end":69},"obj":"NNP"},{"id":"T22575","span":{"begin":58,"end":60},"obj":"IN"},{"id":"T22574","span":{"begin":48,"end":57},"obj":"NN"},{"id":"T22573","span":{"begin":44,"end":47},"obj":"NNP"},{"id":"T22620","span":{"begin":305,"end":307},"obj":"IN"},{"id":"T22619","span":{"begin":302,"end":304},"obj":"IN"},{"id":"T22618","span":{"begin":287,"end":301},"obj":"NN"},{"id":"T22617","span":{"begin":284,"end":286},"obj":"VBZ"},{"id":"T22616","span":{"begin":279,"end":283},"obj":"NN"},{"id":"T22615","span":{"begin":275,"end":278},"obj":"DT"},{"id":"T22614","span":{"begin":273,"end":274},"obj":"."},{"id":"T22613","span":{"begin":266,"end":273},"obj":"VB"},{"id":"T22612","span":{"begin":263,"end":265},"obj":"TO"},{"id":"T22611","span":{"begin":254,"end":262},"obj":"JJ"},{"id":"T22610","span":{"begin":252,"end":253},"obj":","},{"id":"T22609","span":{"begin":246,"end":252},"obj":"NNS"},{"id":"T22608","span":{"begin":241,"end":245},"obj":"NNP"},{"id":"T22607","span":{"begin":232,"end":240},"obj":"NNP"},{"id":"T22606","span":{"begin":225,"end":231},"obj":"JJ"},{"id":"T22605","span":{"begin":222,"end":224},"obj":"IN"},{"id":"T22604","span":{"begin":213,"end":221},"obj":"NN"},{"id":"T22603","span":{"begin":208,"end":212},"obj":"NNP"},{"id":"T22602","span":{"begin":206,"end":207},"obj":"-RRB-"},{"id":"T22601","span":{"begin":205,"end":206},"obj":"NNP"},{"id":"T22600","span":{"begin":204,"end":205},"obj":"-LRB-"},{"id":"T22599","span":{"begin":202,"end":203},"obj":"."},{"id":"T22598","span":{"begin":199,"end":202},"obj":"NNP"},{"id":"T22597","span":{"begin":193,"end":198},"obj":"JJ"}],"relations":[{"id":"R16266","pred":"compound","subj":"T22573","obj":"T22574"},{"id":"R16267","pred":"nmod","subj":"T22574","obj":"T22580"},{"id":"R16268","pred":"prep","subj":"T22575","obj":"T22574"},{"id":"R16269","pred":"compound","subj":"T22576","obj":"T22577"},{"id":"R16270","pred":"pobj","subj":"T22577","obj":"T22575"},{"id":"R16271","pred":"cc","subj":"T22578","obj":"T22577"},{"id":"R16272","pred":"compound","subj":"T22579","obj":"T22580"},{"id":"R16273","pred":"ROOT","subj":"T22580","obj":"T22580"},{"id":"R16274","pred":"prep","subj":"T22581","obj":"T22580"},{"id":"R16275","pred":"amod","subj":"T22582","obj":"T22584"},{"id":"R16276","pred":"compound","subj":"T22583","obj":"T22584"},{"id":"R16277","pred":"pobj","subj":"T22584","obj":"T22581"},{"id":"R16278","pred":"punct","subj":"T22585","obj":"T22580"},{"id":"R16279","pred":"nummod","subj":"T22586","obj":"T22588"},{"id":"R16280","pred":"nummod","subj":"T22587","obj":"T22588"},{"id":"R16281","pred":"nsubjpass","subj":"T22588","obj":"T22590"},{"id":"R16282","pred":"auxpass","subj":"T22589","obj":"T22590"},{"id":"R16283","pred":"ROOT","subj":"T22590","obj":"T22590"},{"id":"R16284","pred":"prep","subj":"T22591","obj":"T22590"},{"id":"R16285","pred":"det","subj":"T22592","obj":"T22594"},{"id":"R16286","pred":"amod","subj":"T22593","obj":"T22594"},{"id":"R16287","pred":"pobj","subj":"T22594","obj":"T22591"},{"id":"R16288","pred":"prep","subj":"T22595","obj":"T22590"},{"id":"R16289","pred":"nummod","subj":"T22596","obj":"T22598"},{"id":"R16290","pred":"amod","subj":"T22597","obj":"T22598"},{"id":"R16291","pred":"pobj","subj":"T22598","obj":"T22595"},{"id":"R16292","pred":"punct","subj":"T22599","obj":"T22590"},{"id":"R16293","pred":"punct","subj":"T22600","obj":"T22604"},{"id":"R16294","pred":"det","subj":"T22601","obj":"T22604"},{"id":"R16295","pred":"punct","subj":"T22602","obj":"T22603"},{"id":"R16296","pred":"compound","subj":"T22603","obj":"T22604"},{"id":"R16297","pred":"ROOT","subj":"T22604","obj":"T22604"},{"id":"R16298","pred":"prep","subj":"T22605","obj":"T22604"},{"id":"R16299","pred":"amod","subj":"T22606","obj":"T22609"},{"id":"R16300","pred":"compound","subj":"T22607","obj":"T22608"},{"id":"R16301","pred":"compound","subj":"T22608","obj":"T22609"},{"id":"R16302","pred":"pobj","subj":"T22609","obj":"T22605"},{"id":"R16303","pred":"punct","subj":"T22610","obj":"T22604"},{"id":"R16304","pred":"amod","subj":"T22611","obj":"T22604"},{"id":"R16305","pred":"prep","subj":"T22612","obj":"T22611"},{"id":"R16306","pred":"pobj","subj":"T22613","obj":"T22612"},{"id":"R16307","pred":"punct","subj":"T22614","obj":"T22604"},{"id":"R16308","pred":"det","subj":"T22615","obj":"T22616"},{"id":"R16309","pred":"nsubj","subj":"T22616","obj":"T22617"},{"id":"R16310","pred":"ROOT","subj":"T22617","obj":"T22617"},{"id":"R16311","pred":"attr","subj":"T22618","obj":"T22617"},{"id":"R16312","pred":"prep","subj":"T22619","obj":"T22618"},{"id":"R16313","pred":"advmod","subj":"T22620","obj":"T22621"},{"id":"R16314","pred":"advmod","subj":"T22621","obj":"T22622"},{"id":"R16315","pred":"nummod","subj":"T22622","obj":"T22624"},{"id":"R16316","pred":"amod","subj":"T22623","obj":"T22624"},{"id":"R16317","pred":"pobj","subj":"T22624","obj":"T22619"},{"id":"R16318","pred":"acl","subj":"T22625","obj":"T22624"},{"id":"R16319","pred":"prep","subj":"T22626","obj":"T22625"},{"id":"R16320","pred":"pobj","subj":"T22627","obj":"T22626"},{"id":"R16321","pred":"punct","subj":"T22628","obj":"T22617"},{"id":"R16322","pred":"punct","subj":"T22629","obj":"T22633"},{"id":"R16323","pred":"nmod","subj":"T22630","obj":"T22633"},{"id":"R16324","pred":"punct","subj":"T22631","obj":"T22630"},{"id":"R16325","pred":"compound","subj":"T22632","obj":"T22633"},{"id":"R16326","pred":"nsubj","subj":"T22633","obj":"T22641"},{"id":"R16327","pred":"prep","subj":"T22634","obj":"T22633"},{"id":"R16328","pred":"nummod","subj":"T22635","obj":"T22637"},{"id":"R16329","pred":"compound","subj":"T22636","obj":"T22637"},{"id":"R16330","pred":"pobj","subj":"T22637","obj":"T22634"},{"id":"R16331","pred":"prep","subj":"T22638","obj":"T22637"},{"id":"R16332","pred":"amod","subj":"T22639","obj":"T22640"},{"id":"R16333","pred":"compound","subj":"T22640","obj":"T22641"},{"id":"R16334","pred":"ROOT","subj":"T22641","obj":"T22641"},{"id":"R16335","pred":"punct","subj":"T22642","obj":"T22641"},{"id":"R16336","pred":"nsubjpass","subj":"T22643","obj":"T22645"},{"id":"R16337","pred":"auxpass","subj":"T22644","obj":"T22645"},{"id":"R16338","pred":"ROOT","subj":"T22645","obj":"T22645"},{"id":"R16339","pred":"prep","subj":"T22646","obj":"T22645"},{"id":"R16340","pred":"pobj","subj":"T22647","obj":"T22646"},{"id":"R16341","pred":"prep","subj":"T22648","obj":"T22645"},{"id":"R16342","pred":"det","subj":"T22649","obj":"T22651"},{"id":"R16343","pred":"compound","subj":"T22650","obj":"T22651"},{"id":"R16344","pred":"pobj","subj":"T22651","obj":"T22648"},{"id":"R16345","pred":"punct","subj":"T22652","obj":"T22645"}],"text":"10.1371/journal.pone.0057855.g001 Figure 1 LPS induction of SerpinB2 mRNA and protein expression in murine macrophage cells.\nRAW264.7 macrophages were treated for the indicated times with 100 ng/ml LPS. (A) qPCR analysis of murine SerpinB2 mRNA levels, relative to β-actin. The plot is representative of at least two independent experiments performed in triplicate. (B) Immunoblot analysis of SerpinB2 protein expression in whole cell lysates. Blot was reprobed for GAPDH as a loading control."}

{"project":"pmc-enju-pas","denotations":[{"id":"T22492","span":{"begin":486,"end":493},"obj":"NN"},{"id":"T22491","span":{"begin":478,"end":485},"obj":"NN"},{"id":"T22490","span":{"begin":476,"end":477},"obj":"DT"},{"id":"T22489","span":{"begin":473,"end":475},"obj":"IN"},{"id":"T22488","span":{"begin":467,"end":472},"obj":"NN"},{"id":"T22487","span":{"begin":463,"end":466},"obj":"IN"},{"id":"T22486","span":{"begin":454,"end":462},"obj":"VB"},{"id":"T22485","span":{"begin":450,"end":453},"obj":"VB"},{"id":"T22484","span":{"begin":445,"end":449},"obj":"NN"},{"id":"T22483","span":{"begin":436,"end":443},"obj":"NN"},{"id":"T22482","span":{"begin":431,"end":435},"obj":"NN"},{"id":"T22481","span":{"begin":425,"end":430},"obj":"JJ"},{"id":"T22480","span":{"begin":422,"end":424},"obj":"IN"},{"id":"T22479","span":{"begin":411,"end":421},"obj":"NN"},{"id":"T22478","span":{"begin":403,"end":410},"obj":"NN"},{"id":"T22477","span":{"begin":394,"end":402},"obj":"NN"},{"id":"T22476","span":{"begin":391,"end":393},"obj":"IN"},{"id":"T22475","span":{"begin":382,"end":390},"obj":"NN"},{"id":"T22474","span":{"begin":371,"end":381},"obj":"NN"},{"id":"T22473","span":{"begin":369,"end":370},"obj":"-RRB-"},{"id":"T22472","span":{"begin":368,"end":369},"obj":"NN"},{"id":"T22471","span":{"begin":367,"end":368},"obj":"-LRB-"},{"id":"T22470","span":{"begin":355,"end":366},"obj":"FW"},{"id":"T22469","span":{"begin":352,"end":354},"obj":"IN"},{"id":"T22468","span":{"begin":342,"end":351},"obj":"VB"},{"id":"T22467","span":{"begin":330,"end":341},"obj":"NN"},{"id":"T22466","span":{"begin":318,"end":329},"obj":"JJ"},{"id":"T22465","span":{"begin":314,"end":317},"obj":"CD"},{"id":"T22464","span":{"begin":308,"end":313},"obj":"JJ"},{"id":"T22463","span":{"begin":305,"end":307},"obj":"IN"},{"id":"T22462","span":{"begin":302,"end":304},"obj":"IN"},{"id":"T22461","span":{"begin":287,"end":301},"obj":"JJ"},{"id":"T22460","span":{"begin":284,"end":286},"obj":"VB"},{"id":"T22459","span":{"begin":279,"end":283},"obj":"NN"},{"id":"T22458","span":{"begin":275,"end":278},"obj":"DT"},{"id":"T22457","span":{"begin":266,"end":273},"obj":"NN"},{"id":"T22456","span":{"begin":263,"end":265},"obj":"TO"},{"id":"T22455","span":{"begin":254,"end":262},"obj":"JJ"},{"id":"T22454","span":{"begin":252,"end":253},"obj":"-COMMA-"},{"id":"T22453","span":{"begin":246,"end":252},"obj":"NN"},{"id":"T22452","span":{"begin":241,"end":245},"obj":"NN"},{"id":"T22451","span":{"begin":232,"end":240},"obj":"NN"},{"id":"T22450","span":{"begin":225,"end":231},"obj":"JJ"},{"id":"T22449","span":{"begin":222,"end":224},"obj":"IN"},{"id":"T22448","span":{"begin":213,"end":221},"obj":"NN"},{"id":"T22447","span":{"begin":208,"end":212},"obj":"NN"},{"id":"T22446","span":{"begin":206,"end":207},"obj":"-RRB-"},{"id":"T22445","span":{"begin":205,"end":206},"obj":"NN"},{"id":"T22444","span":{"begin":204,"end":205},"obj":"-LRB-"},{"id":"T22443","span":{"begin":199,"end":203},"obj":"NN"},{"id":"T22442","span":{"begin":193,"end":198},"obj":"NN"},{"id":"T22441","span":{"begin":189,"end":192},"obj":"CD"},{"id":"T22440","span":{"begin":184,"end":188},"obj":"IN"},{"id":"T22439","span":{"begin":178,"end":183},"obj":"NN"},{"id":"T22438","span":{"begin":168,"end":177},"obj":"VB"},{"id":"T22437","span":{"begin":164,"end":167},"obj":"DT"},{"id":"T22436","span":{"begin":160,"end":163},"obj":"IN"},{"id":"T22435","span":{"begin":152,"end":159},"obj":"VB"},{"id":"T22434","span":{"begin":147,"end":151},"obj":"VB"},{"id":"T22433","span":{"begin":135,"end":146},"obj":"NN"},{"id":"T22432","span":{"begin":126,"end":134},"obj":"NN"},{"id":"T22431","span":{"begin":119,"end":124},"obj":"NN"},{"id":"T22430","span":{"begin":108,"end":118},"obj":"NN"},{"id":"T22429","span":{"begin":101,"end":107},"obj":"JJ"},{"id":"T22428","span":{"begin":98,"end":100},"obj":"IN"},{"id":"T22427","span":{"begin":87,"end":97},"obj":"NN"},{"id":"T22426","span":{"begin":79,"end":86},"obj":"NN"},{"id":"T22425","span":{"begin":75,"end":78},"obj":"CC"},{"id":"T22424","span":{"begin":70,"end":74},"obj":"NN"},{"id":"T22423","span":{"begin":61,"end":69},"obj":"NN"},{"id":"T22422","span":{"begin":58,"end":60},"obj":"IN"},{"id":"T22421","span":{"begin":48,"end":57},"obj":"NN"},{"id":"T22420","span":{"begin":44,"end":47},"obj":"NN"}],"relations":[{"id":"R16169","pred":"arg1Of","subj":"T22421","obj":"T22420"},{"id":"R16170","pred":"arg1Of","subj":"T22421","obj":"T22422"},{"id":"R16171","pred":"arg1Of","subj":"T22421","obj":"T22428"},{"id":"R16172","pred":"arg1Of","subj":"T22424","obj":"T22423"},{"id":"R16173","pred":"arg1Of","subj":"T22424","obj":"T22425"},{"id":"R16174","pred":"arg2Of","subj":"T22425","obj":"T22422"},{"id":"R16175","pred":"arg2Of","subj":"T22427","obj":"T22425"},{"id":"R16176","pred":"arg1Of","subj":"T22427","obj":"T22426"},{"id":"R16177","pred":"arg2Of","subj":"T22431","obj":"T22428"},{"id":"R16178","pred":"arg1Of","subj":"T22431","obj":"T22429"},{"id":"R16179","pred":"arg1Of","subj":"T22431","obj":"T22430"},{"id":"R16180","pred":"arg1Of","subj":"T22433","obj":"T22432"},{"id":"R16181","pred":"arg1Of","subj":"T22433","obj":"T22434"},{"id":"R16182","pred":"arg2Of","subj":"T22433","obj":"T22435"},{"id":"R16183","pred":"arg2Of","subj":"T22435","obj":"T22434"},{"id":"R16184","pred":"arg1Of","subj":"T22435","obj":"T22436"},{"id":"R16185","pred":"arg1Of","subj":"T22438","obj":"T22439"},{"id":"R16186","pred":"arg1Of","subj":"T22439","obj":"T22440"},{"id":"R16187","pred":"arg1Of","subj":"T22441","obj":"T22442"},{"id":"R16188","pred":"arg2Of","subj":"T22443","obj":"T22440"},{"id":"R16189","pred":"arg1Of","subj":"T22443","obj":"T22441"},{"id":"R16190","pred":"arg1Of","subj":"T22443","obj":"T22444"},{"id":"R16191","pred":"arg2Of","subj":"T22445","obj":"T22444"},{"id":"R16192","pred":"arg3Of","subj":"T22446","obj":"T22444"},{"id":"R16193","pred":"arg2Of","subj":"T22448","obj":"T22436"},{"id":"R16194","pred":"arg1Of","subj":"T22448","obj":"T22437"},{"id":"R16195","pred":"arg2Of","subj":"T22448","obj":"T22438"},{"id":"R16196","pred":"arg1Of","subj":"T22448","obj":"T22447"},{"id":"R16197","pred":"arg1Of","subj":"T22448","obj":"T22449"},{"id":"R16198","pred":"arg2Of","subj":"T22453","obj":"T22449"},{"id":"R16199","pred":"arg1Of","subj":"T22453","obj":"T22450"},{"id":"R16200","pred":"arg1Of","subj":"T22453","obj":"T22451"},{"id":"R16201","pred":"arg1Of","subj":"T22453","obj":"T22452"},{"id":"R16202","pred":"arg1Of","subj":"T22453","obj":"T22454"},{"id":"R16203","pred":"arg1Of","subj":"T22453","obj":"T22455"},{"id":"R16204","pred":"arg1Of","subj":"T22455","obj":"T22456"},{"id":"R16205","pred":"arg2Of","subj":"T22457","obj":"T22456"},{"id":"R16206","pred":"arg1Of","subj":"T22459","obj":"T22458"},{"id":"R16207","pred":"arg1Of","subj":"T22459","obj":"T22460"},{"id":"R16208","pred":"arg1Of","subj":"T22459","obj":"T22461"},{"id":"R16209","pred":"arg2Of","subj":"T22461","obj":"T22460"},{"id":"R16210","pred":"arg1Of","subj":"T22461","obj":"T22462"},{"id":"R16211","pred":"arg1Of","subj":"T22465","obj":"T22463"},{"id":"R16212","pred":"arg1Of","subj":"T22465","obj":"T22464"},{"id":"R16213","pred":"arg2Of","subj":"T22467","obj":"T22462"},{"id":"R16214","pred":"arg1Of","subj":"T22467","obj":"T22465"},{"id":"R16215","pred":"arg1Of","subj":"T22467","obj":"T22466"},{"id":"R16216","pred":"arg2Of","subj":"T22467","obj":"T22468"},{"id":"R16217","pred":"arg1Of","subj":"T22468","obj":"T22469"},{"id":"R16218","pred":"arg2Of","subj":"T22472","obj":"T22471"},{"id":"R16219","pred":"arg3Of","subj":"T22473","obj":"T22471"},{"id":"R16220","pred":"arg2Of","subj":"T22475","obj":"T22469"},{"id":"R16221","pred":"arg1Of","subj":"T22475","obj":"T22470"},{"id":"R16222","pred":"arg1Of","subj":"T22475","obj":"T22471"},{"id":"R16223","pred":"arg1Of","subj":"T22475","obj":"T22474"},{"id":"R16224","pred":"arg1Of","subj":"T22475","obj":"T22476"},{"id":"R16225","pred":"arg2Of","subj":"T22479","obj":"T22476"},{"id":"R16226","pred":"arg1Of","subj":"T22479","obj":"T22477"},{"id":"R16227","pred":"arg1Of","subj":"T22479","obj":"T22478"},{"id":"R16228","pred":"arg1Of","subj":"T22479","obj":"T22480"},{"id":"R16229","pred":"arg2Of","subj":"T22483","obj":"T22480"},{"id":"R16230","pred":"arg1Of","subj":"T22483","obj":"T22481"},{"id":"R16231","pred":"arg1Of","subj":"T22483","obj":"T22482"},{"id":"R16232","pred":"arg1Of","subj":"T22484","obj":"T22485"},{"id":"R16233","pred":"arg2Of","subj":"T22484","obj":"T22486"},{"id":"R16234","pred":"arg2Of","subj":"T22486","obj":"T22485"},{"id":"R16235","pred":"arg1Of","subj":"T22486","obj":"T22487"},{"id":"R16236","pred":"arg1Of","subj":"T22486","obj":"T22489"},{"id":"R16237","pred":"arg2Of","subj":"T22488","obj":"T22487"},{"id":"R16238","pred":"arg2Of","subj":"T22492","obj":"T22489"},{"id":"R16239","pred":"arg1Of","subj":"T22492","obj":"T22490"},{"id":"R16240","pred":"arg1Of","subj":"T22492","obj":"T22491"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"10.1371/journal.pone.0057855.g001 Figure 1 LPS induction of SerpinB2 mRNA and protein expression in murine macrophage cells.\nRAW264.7 macrophages were treated for the indicated times with 100 ng/ml LPS. (A) qPCR analysis of murine SerpinB2 mRNA levels, relative to β-actin. The plot is representative of at least two independent experiments performed in triplicate. (B) Immunoblot analysis of SerpinB2 protein expression in whole cell lysates. Blot was reprobed for GAPDH as a loading control."}

{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T22412","span":{"begin":467,"end":472},"obj":"Protein"},{"id":"T22411","span":{"begin":394,"end":402},"obj":"Protein"},{"id":"T22410","span":{"begin":266,"end":273},"obj":"Protein"},{"id":"T22409","span":{"begin":232,"end":240},"obj":"Protein"},{"id":"T22408","span":{"begin":61,"end":69},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"10.1371/journal.pone.0057855.g001 Figure 1 LPS induction of SerpinB2 mRNA and protein expression in murine macrophage cells.\nRAW264.7 macrophages were treated for the indicated times with 100 ng/ml LPS. (A) qPCR analysis of murine SerpinB2 mRNA levels, relative to β-actin. The plot is representative of at least two independent experiments performed in triplicate. (B) Immunoblot analysis of SerpinB2 protein expression in whole cell lysates. Blot was reprobed for GAPDH as a loading control."}

{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T22511","span":{"begin":467,"end":472},"obj":"http://www.uniprot.org/uniprot/P04406"},{"id":"T22510","span":{"begin":266,"end":273},"obj":"http://www.uniprot.org/uniprot/P60709"},{"id":"T22509","span":{"begin":394,"end":402},"obj":"http://www.uniprot.org/uniprot/P05120"},{"id":"T22508","span":{"begin":232,"end":240},"obj":"http://www.uniprot.org/uniprot/P05120"},{"id":"T22507","span":{"begin":61,"end":69},"obj":"http://www.uniprot.org/uniprot/P05120"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"10.1371/journal.pone.0057855.g001 Figure 1 LPS induction of SerpinB2 mRNA and protein expression in murine macrophage cells.\nRAW264.7 macrophages were treated for the indicated times with 100 ng/ml LPS. (A) qPCR analysis of murine SerpinB2 mRNA levels, relative to β-actin. The plot is representative of at least two independent experiments performed in triplicate. (B) Immunoblot analysis of SerpinB2 protein expression in whole cell lysates. Blot was reprobed for GAPDH as a loading control."}

{"project":"GO-CC","denotations":[{"id":"T22414","span":{"begin":431,"end":435},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T22413","span":{"begin":119,"end":124},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"10.1371/journal.pone.0057855.g001 Figure 1 LPS induction of SerpinB2 mRNA and protein expression in murine macrophage cells.\nRAW264.7 macrophages were treated for the indicated times with 100 ng/ml LPS. (A) qPCR analysis of murine SerpinB2 mRNA levels, relative to β-actin. The plot is representative of at least two independent experiments performed in triplicate. (B) Immunoblot analysis of SerpinB2 protein expression in whole cell lysates. Blot was reprobed for GAPDH as a loading control."}

{"project":"sentences","denotations":[{"id":"T22399","span":{"begin":445,"end":494},"obj":"Sentence"},{"id":"T22398","span":{"begin":275,"end":444},"obj":"Sentence"},{"id":"T22397","span":{"begin":126,"end":274},"obj":"Sentence"},{"id":"T22396","span":{"begin":44,"end":125},"obj":"Sentence"},{"id":"T118","span":{"begin":0,"end":125},"obj":"Sentence"},{"id":"T119","span":{"begin":126,"end":274},"obj":"Sentence"},{"id":"T120","span":{"begin":275,"end":444},"obj":"Sentence"},{"id":"T121","span":{"begin":445,"end":494},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"10.1371/journal.pone.0057855.g001 Figure 1 LPS induction of SerpinB2 mRNA and protein expression in murine macrophage cells.\nRAW264.7 macrophages were treated for the indicated times with 100 ng/ml LPS. (A) qPCR analysis of murine SerpinB2 mRNA levels, relative to β-actin. The plot is representative of at least two independent experiments performed in triplicate. (B) Immunoblot analysis of SerpinB2 protein expression in whole cell lysates. Blot was reprobed for GAPDH as a loading control."}

{"project":"simple1","denotations":[{"id":"T22419","span":{"begin":467,"end":472},"obj":"Protein"},{"id":"T22418","span":{"begin":394,"end":402},"obj":"Protein"},{"id":"T22417","span":{"begin":266,"end":273},"obj":"Protein"},{"id":"T22416","span":{"begin":232,"end":240},"obj":"Protein"},{"id":"T22415","span":{"begin":61,"end":69},"obj":"Protein"}],"text":"10.1371/journal.pone.0057855.g001 Figure 1 LPS induction of SerpinB2 mRNA and protein expression in murine macrophage cells.\nRAW264.7 macrophages were treated for the indicated times with 100 ng/ml LPS. (A) qPCR analysis of murine SerpinB2 mRNA levels, relative to β-actin. The plot is representative of at least two independent experiments performed in triplicate. (B) Immunoblot analysis of SerpinB2 protein expression in whole cell lysates. Blot was reprobed for GAPDH as a loading control."}

{"project":"BioNLP16_DUT","denotations":[{"id":"T22506","span":{"begin":411,"end":421},"obj":"Gene_expression"},{"id":"T22505","span":{"begin":246,"end":252},"obj":"Transcription"},{"id":"T22504","span":{"begin":87,"end":97},"obj":"Gene_expression"},{"id":"T22503","span":{"begin":48,"end":57},"obj":"Positive_regulation"},{"id":"T22502","span":{"begin":467,"end":472},"obj":"Protein"},{"id":"T22501","span":{"begin":394,"end":402},"obj":"Protein"},{"id":"T22500","span":{"begin":266,"end":273},"obj":"Protein"},{"id":"T22499","span":{"begin":232,"end":240},"obj":"Protein"},{"id":"T22498","span":{"begin":61,"end":69},"obj":"Protein"}],"relations":[{"id":"R16241","pred":"themeOf","subj":"T22498","obj":"T22503"},{"id":"R16242","pred":"themeOf","subj":"T22498","obj":"T22504"},{"id":"R16243","pred":"themeOf","subj":"T22499","obj":"T22505"},{"id":"R16244","pred":"themeOf","subj":"T22501","obj":"T22506"},{"id":"R16245","pred":"themeOf","subj":"T22504","obj":"T22503"}],"text":"10.1371/journal.pone.0057855.g001 Figure 1 LPS induction of SerpinB2 mRNA and protein expression in murine macrophage cells.\nRAW264.7 macrophages were treated for the indicated times with 100 ng/ml LPS. (A) qPCR analysis of murine SerpinB2 mRNA levels, relative to β-actin. The plot is representative of at least two independent experiments performed in triplicate. (B) Immunoblot analysis of SerpinB2 protein expression in whole cell lysates. Blot was reprobed for GAPDH as a loading control."}

{"project":"BioNLP16_Messiy","denotations":[{"id":"T22534","span":{"begin":411,"end":421},"obj":"Gene_expression"},{"id":"T22533","span":{"begin":48,"end":57},"obj":"Positive_regulation"},{"id":"T22532","span":{"begin":87,"end":97},"obj":"Gene_expression"},{"id":"T22531","span":{"begin":467,"end":472},"obj":"Protein"},{"id":"T22530","span":{"begin":394,"end":402},"obj":"Protein"},{"id":"T22529","span":{"begin":266,"end":273},"obj":"Protein"},{"id":"T22528","span":{"begin":232,"end":240},"obj":"Protein"},{"id":"T22527","span":{"begin":61,"end":69},"obj":"Protein"}],"relations":[{"id":"R16252","pred":"themeOf","subj":"T22527","obj":"T22533"},{"id":"R16253","pred":"themeOf","subj":"T22527","obj":"T22532"},{"id":"R16254","pred":"themeOf","subj":"T22530","obj":"T22534"},{"id":"R16255","pred":"themeOf","subj":"T22532","obj":"T22533"}],"text":"10.1371/journal.pone.0057855.g001 Figure 1 LPS induction of SerpinB2 mRNA and protein expression in murine macrophage cells.\nRAW264.7 macrophages were treated for the indicated times with 100 ng/ml LPS. (A) qPCR analysis of murine SerpinB2 mRNA levels, relative to β-actin. The plot is representative of at least two independent experiments performed in triplicate. (B) Immunoblot analysis of SerpinB2 protein expression in whole cell lysates. Blot was reprobed for GAPDH as a loading control."}

{"project":"DLUT931","denotations":[{"id":"T22519","span":{"begin":411,"end":421},"obj":"Gene_expression"},{"id":"T22518","span":{"begin":87,"end":97},"obj":"Gene_expression"},{"id":"T22517","span":{"begin":48,"end":57},"obj":"Positive_regulation"},{"id":"T22516","span":{"begin":467,"end":472},"obj":"Protein"},{"id":"T22515","span":{"begin":394,"end":402},"obj":"Protein"},{"id":"T22514","span":{"begin":266,"end":273},"obj":"Protein"},{"id":"T22513","span":{"begin":232,"end":240},"obj":"Protein"},{"id":"T22512","span":{"begin":61,"end":69},"obj":"Protein"}],"relations":[{"id":"R16246","pred":"themeOf","subj":"T22512","obj":"T22517"},{"id":"R16247","pred":"themeOf","subj":"T22512","obj":"T22518"},{"id":"R16248","pred":"themeOf","subj":"T22515","obj":"T22519"},{"id":"R16249","pred":"themeOf","subj":"T22518","obj":"T22517"}],"text":"10.1371/journal.pone.0057855.g001 Figure 1 LPS induction of SerpinB2 mRNA and protein expression in murine macrophage cells.\nRAW264.7 macrophages were treated for the indicated times with 100 ng/ml LPS. (A) qPCR analysis of murine SerpinB2 mRNA levels, relative to β-actin. The plot is representative of at least two independent experiments performed in triplicate. (B) Immunoblot analysis of SerpinB2 protein expression in whole cell lysates. Blot was reprobed for GAPDH as a loading control."}

{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T22572","span":{"begin":79,"end":97},"obj":"Gene_expression"},{"id":"T22571","span":{"begin":382,"end":443},"obj":"Gene_expression"},{"id":"T22570","span":{"begin":476,"end":493},"obj":"Regulation"},{"id":"T22569","span":{"begin":61,"end":74},"obj":"Protein"},{"id":"T22568","span":{"begin":108,"end":118},"obj":"Entity"},{"id":"T22567","span":{"begin":126,"end":146},"obj":"Entity"},{"id":"T22566","span":{"begin":208,"end":212},"obj":"Protein"},{"id":"T22565","span":{"begin":193,"end":202},"obj":"Entity"},{"id":"T22564","span":{"begin":101,"end":124},"obj":"Entity"},{"id":"T22563","span":{"begin":467,"end":472},"obj":"Protein"},{"id":"T22562","span":{"begin":241,"end":245},"obj":"Protein"},{"id":"T22561","span":{"begin":222,"end":253},"obj":"Protein"},{"id":"T22560","span":{"begin":394,"end":402},"obj":"Protein"},{"id":"T22559","span":{"begin":44,"end":47},"obj":"Entity"},{"id":"T22558","span":{"begin":79,"end":86},"obj":"Protein"},{"id":"T22557","span":{"begin":266,"end":273},"obj":"Protein"},{"id":"T22556","span":{"begin":61,"end":69},"obj":"Protein"},{"id":"T22555","span":{"begin":394,"end":410},"obj":"Protein"}],"relations":[{"id":"R16264","pred":"themeOf","subj":"T22555","obj":"T22571"},{"id":"R16265","pred":"themeOf","subj":"T22558","obj":"T22572"}],"text":"10.1371/journal.pone.0057855.g001 Figure 1 LPS induction of SerpinB2 mRNA and protein expression in murine macrophage cells.\nRAW264.7 macrophages were treated for the indicated times with 100 ng/ml LPS. (A) qPCR analysis of murine SerpinB2 mRNA levels, relative to β-actin. The plot is representative of at least two independent experiments performed in triplicate. (B) Immunoblot analysis of SerpinB2 protein expression in whole cell lysates. Blot was reprobed for GAPDH as a loading control."}

{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T22544","span":{"begin":467,"end":472},"obj":"Protein"},{"id":"T22543","span":{"begin":445,"end":449},"obj":"Protein"},{"id":"T22542","span":{"begin":411,"end":421},"obj":"Gene_expression"},{"id":"T22541","span":{"begin":394,"end":410},"obj":"Protein"},{"id":"T22540","span":{"begin":266,"end":273},"obj":"Protein"},{"id":"T22539","span":{"begin":232,"end":245},"obj":"Protein"},{"id":"T22538","span":{"begin":48,"end":57},"obj":"Positive_regulation"},{"id":"T22537","span":{"begin":87,"end":97},"obj":"Gene_expression"},{"id":"T22536","span":{"begin":48,"end":57},"obj":"Positive_regulation"},{"id":"T22535","span":{"begin":61,"end":74},"obj":"Protein"}],"relations":[{"id":"R16256","pred":"themeOf","subj":"T22535","obj":"T22536"},{"id":"R16257","pred":"themeOf","subj":"T22535","obj":"T22537"},{"id":"R16258","pred":"themeOf","subj":"T22537","obj":"T22538"},{"id":"R16259","pred":"themeOf","subj":"T22541","obj":"T22542"}],"text":"10.1371/journal.pone.0057855.g001 Figure 1 LPS induction of SerpinB2 mRNA and protein expression in murine macrophage cells.\nRAW264.7 macrophages were treated for the indicated times with 100 ng/ml LPS. (A) qPCR analysis of murine SerpinB2 mRNA levels, relative to β-actin. The plot is representative of at least two independent experiments performed in triplicate. (B) Immunoblot analysis of SerpinB2 protein expression in whole cell lysates. Blot was reprobed for GAPDH as a loading control."}

{"project":"testone","denotations":[{"id":"T22382","span":{"begin":411,"end":421},"obj":"Gene_expression"},{"id":"T22381","span":{"begin":87,"end":97},"obj":"Gene_expression"},{"id":"T22380","span":{"begin":48,"end":57},"obj":"Positive_regulation"},{"id":"T22379","span":{"begin":467,"end":472},"obj":"Protein"},{"id":"T22378","span":{"begin":394,"end":402},"obj":"Protein"},{"id":"T22377","span":{"begin":266,"end":273},"obj":"Protein"},{"id":"T22376","span":{"begin":232,"end":240},"obj":"Protein"},{"id":"T22375","span":{"begin":61,"end":69},"obj":"Protein"}],"relations":[{"id":"R16160","pred":"themeOf","subj":"T22375","obj":"T22380"},{"id":"R16161","pred":"themeOf","subj":"T22378","obj":"T22382"},{"id":"R16162","pred":"themeOf","subj":"T22381","obj":"T22380"}],"text":"10.1371/journal.pone.0057855.g001 Figure 1 LPS induction of SerpinB2 mRNA and protein expression in murine macrophage cells.\nRAW264.7 macrophages were treated for the indicated times with 100 ng/ml LPS. (A) qPCR analysis of murine SerpinB2 mRNA levels, relative to β-actin. The plot is representative of at least two independent experiments performed in triplicate. (B) Immunoblot analysis of SerpinB2 protein expression in whole cell lysates. Blot was reprobed for GAPDH as a loading control."}

{"project":"test3","denotations":[{"id":"T22395","span":{"begin":467,"end":472},"obj":"Protein"},{"id":"T22394","span":{"begin":411,"end":421},"obj":"Gene_expression"},{"id":"T22393","span":{"begin":394,"end":402},"obj":"Protein"},{"id":"T22392","span":{"begin":266,"end":273},"obj":"Protein"},{"id":"T22391","span":{"begin":232,"end":240},"obj":"Protein"},{"id":"T22390","span":{"begin":87,"end":97},"obj":"Gene_expression"},{"id":"T22389","span":{"begin":61,"end":69},"obj":"Protein"},{"id":"T22388","span":{"begin":48,"end":57},"obj":"Positive_regulation"},{"id":"T22387","span":{"begin":467,"end":472},"obj":"Protein"},{"id":"T22386","span":{"begin":394,"end":402},"obj":"Protein"},{"id":"T22385","span":{"begin":266,"end":273},"obj":"Protein"},{"id":"T22384","span":{"begin":232,"end":240},"obj":"Protein"},{"id":"T22383","span":{"begin":61,"end":69},"obj":"Protein"}],"relations":[{"id":"R16163","pred":"themeOf","subj":"T22389","obj":"T22390"},{"id":"R16164","pred":"themeOf","subj":"T22390","obj":"T22388"},{"id":"R16165","pred":"themeOf","subj":"T22393","obj":"T22394"}],"text":"10.1371/journal.pone.0057855.g001 Figure 1 LPS induction of SerpinB2 mRNA and protein expression in murine macrophage cells.\nRAW264.7 macrophages were treated for the indicated times with 100 ng/ml LPS. (A) qPCR analysis of murine SerpinB2 mRNA levels, relative to β-actin. The plot is representative of at least two independent experiments performed in triplicate. (B) Immunoblot analysis of SerpinB2 protein expression in whole cell lysates. Blot was reprobed for GAPDH as a loading control."}