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PMC:3589482 / 17661-17847 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9354 185-186 . denotes .
T9353 184-185 NNP denotes ]
T9352 182-184 CD denotes 32
T9351 181-182 NNP denotes [
T9350 179-180 : denotes ;
T9349 178-179 NNP denotes ]
T9348 177-178 CD denotes 4
T9347 176-177 VBP denotes [
T9346 170-175 NNS denotes cells
T9345 158-169 NN denotes mononuclear
T9344 152-157 NN denotes blood
T9343 141-151 JJ denotes peripheral
T9342 135-140 JJ denotes human
T9341 131-134 CC denotes and
T9340 119-130 NNS denotes macrophages
T9339 108-118 JJ denotes peritoneal
T9338 101-107 JJ denotes murine
T9337 98-100 IN denotes in
T9336 87-97 RB denotes previously
T9335 78-86 VBN denotes reported
T9334 73-77 VBN denotes been
T9333 69-72 VBZ denotes has
T9332 58-68 NN denotes expression
T9331 53-57 NNP denotes mRNA
T9330 44-52 NNP denotes SerpinB2
T9329 30-43 JJ denotes LPS-inducible
T9328 27-29 IN denotes of
T9327 17-26 NN denotes induction
T9326 10-16 JJ denotes strong
T9325 2-9 JJ denotes similar
T9324 0-1 DT denotes A
R6826 T9324 T9327 det A,induction
R6827 T9325 T9327 amod similar,induction
R6828 T9326 T9327 amod strong,induction
R6829 T9327 T9335 nsubjpass induction,reported
R6830 T9328 T9327 prep of,induction
R6831 T9329 T9332 amod LPS-inducible,expression
R6832 T9330 T9331 compound SerpinB2,mRNA
R6833 T9331 T9332 compound mRNA,expression
R6834 T9332 T9328 pobj expression,of
R6835 T9333 T9335 aux has,reported
R6836 T9334 T9335 auxpass been,reported
R6837 T9335 T9335 ROOT reported,reported
R6838 T9336 T9335 advmod previously,reported
R6839 T9337 T9335 prep in,reported
R6840 T9338 T9340 amod murine,macrophages
R6841 T9339 T9340 amod peritoneal,macrophages
R6842 T9340 T9337 pobj macrophages,in
R6843 T9341 T9340 cc and,macrophages
R6844 T9342 T9344 amod human,blood
R6845 T9343 T9344 compound peripheral,blood
R6846 T9344 T9346 compound blood,cells
R6847 T9345 T9346 compound mononuclear,cells
R6848 T9346 T9340 conj cells,macrophages
R6849 T9347 T9349 nmod [,]
R6850 T9348 T9349 nummod 4,]
R6851 T9349 T9335 npadvmod ],reported
R6852 T9350 T9349 punct ;,]
R6853 T9351 T9349 conj [,]
R6854 T9352 T9353 nummod 32,]
R6855 T9353 T9349 conj ],]
R6856 T9354 T9335 punct .,reported

2_test

Id Subject Object Predicate Lexical cue
23472114-11001915-87899176 182-184 11001915 denotes 32
T57168 182-184 11001915 denotes 32

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9120 184-185 -RRB- denotes ]
T9119 182-184 CD denotes 32
T9118 181-182 -LRB- denotes [
T9117 179-180 -COLON- denotes ;
T9116 178-179 -RRB- denotes ]
T9115 177-178 CD denotes 4
T9114 176-177 -LRB- denotes [
T9113 170-175 NN denotes cells
T9112 158-169 JJ denotes mononuclear
T9111 152-157 NN denotes blood
T9110 141-151 JJ denotes peripheral
T9109 135-140 JJ denotes human
T9108 131-134 CC denotes and
T9107 119-130 NN denotes macrophages
T9106 108-118 JJ denotes peritoneal
T9105 101-107 JJ denotes murine
T9104 98-100 IN denotes in
T9103 87-97 RB denotes previously
T9102 78-86 VB denotes reported
T9101 73-77 VB denotes been
T9100 69-72 VB denotes has
T9099 58-68 NN denotes expression
T9098 53-57 NN denotes mRNA
T9097 44-52 NN denotes SerpinB2
T9096 30-43 JJ denotes LPS-inducible
T9095 27-29 IN denotes of
T9094 17-26 NN denotes induction
T9093 10-16 JJ denotes strong
T9092 2-9 JJ denotes similar
T9091 0-1 DT denotes A
R6649 T9094 T9091 arg1Of induction,A
R6650 T9094 T9092 arg1Of induction,similar
R6651 T9094 T9093 arg1Of induction,strong
R6652 T9094 T9095 arg1Of induction,of
R6653 T9094 T9100 arg1Of induction,has
R6654 T9094 T9101 arg1Of induction,been
R6655 T9094 T9102 arg2Of induction,reported
R6656 T9099 T9095 arg2Of expression,of
R6657 T9099 T9096 arg1Of expression,LPS-inducible
R6658 T9099 T9097 arg1Of expression,SerpinB2
R6659 T9099 T9098 arg1Of expression,mRNA
R6660 T9102 T9100 arg2Of reported,has
R6661 T9102 T9101 arg2Of reported,been
R6662 T9102 T9103 arg1Of reported,previously
R6663 T9102 T9104 arg1Of reported,in
R6664 T9102 T9114 arg1Of reported,[
R6665 T9102 T9117 arg1Of reported,;
R6666 T9102 T9118 arg1Of reported,[
R6667 T9107 T9105 arg1Of macrophages,murine
R6668 T9107 T9106 arg1Of macrophages,peritoneal
R6669 T9107 T9108 arg1Of macrophages,and
R6670 T9108 T9104 arg2Of and,in
R6671 T9113 T9108 arg2Of cells,and
R6672 T9113 T9109 arg1Of cells,human
R6673 T9113 T9110 arg1Of cells,peripheral
R6674 T9113 T9111 arg1Of cells,blood
R6675 T9113 T9112 arg1Of cells,mononuclear
R6676 T9115 T9114 arg2Of 4,[
R6677 T9116 T9114 arg3Of ],[
R6678 T9119 T9118 arg2Of 32,[
R6679 T9120 T9118 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T9035 44-52 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9196 44-52 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

UBERON-AE

Id Subject Object Predicate Lexical cue
T9012 152-157 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood

GO-CC

Id Subject Object Predicate Lexical cue
T9040 170-175 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T9015 0-186 Sentence denotes A similar strong induction of LPS-inducible SerpinB2 mRNA expression has been reported previously in murine peritoneal macrophages and human peripheral blood mononuclear cells [4]; [32].
T115 0-186 Sentence denotes A similar strong induction of LPS-inducible SerpinB2 mRNA expression has been reported previously in murine peritoneal macrophages and human peripheral blood mononuclear cells [4]; [32].

simple1

Id Subject Object Predicate Lexical cue
T9049 44-52 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T9189 17-26 Positive_regulation denotes induction
T9188 58-68 Transcription denotes expression
T9187 30-43 Positive_regulation denotes LPS-inducible
T9183 44-52 Protein denotes SerpinB2
R6741 T9183 T9188 themeOf SerpinB2,expression
R6744 T9188 T9189 themeOf expression,induction
R6745 T9188 T9187 themeOf expression,LPS-inducible

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T9228 58-68 Transcription denotes expression
T9227 30-43 Positive_regulation denotes LPS-inducible
T9226 17-26 Positive_regulation denotes induction
T9223 44-52 Protein denotes SerpinB2
R6760 T9223 T9228 themeOf SerpinB2,expression
R6763 T9228 T9226 themeOf expression,induction
R6764 T9228 T9227 themeOf expression,LPS-inducible

DLUT931

Id Subject Object Predicate Lexical cue
T9208 30-43 Positive_regulation denotes LPS-inducible
T9207 17-26 Positive_regulation denotes induction
T9206 58-68 Transcription denotes expression
T9201 44-52 Protein denotes SerpinB2
R6750 T9201 T9206 themeOf SerpinB2,expression
R6753 T9206 T9207 themeOf expression,induction
R6754 T9206 T9208 themeOf expression,LPS-inducible

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T9281 27-68 Gene_expression denotes of LPS-inducible SerpinB2 mRNA expression
T9276 135-175 Entity denotes human peripheral blood mononuclear cells
T9265 101-130 Entity denotes murine peritoneal macrophages
T9261 44-57 Protein denotes SerpinB2 mRNA
T9257 44-52 Protein denotes SerpinB2
R6781 T9261 T9281 themeOf SerpinB2 mRNA,of LPS-inducible SerpinB2 mRNA expression

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T9238 17-26 Positive_regulation denotes induction
T9237 30-43 Positive_regulation denotes LPS-inducible
T9236 58-68 Gene_expression denotes expression
T9235 44-57 Protein denotes SerpinB2 mRNA
R6767 T9235 T9236 themeOf SerpinB2 mRNA,expression
R6768 T9236 T9237 themeOf expression,LPS-inducible
R6769 T9237 T9238 themeOf LPS-inducible,induction

testone

Id Subject Object Predicate Lexical cue
T8991 53-68 Transcription denotes mRNA expression
T8990 34-43 Positive_regulation denotes inducible
T8989 17-26 Positive_regulation denotes induction
T8985 44-52 Protein denotes SerpinB2
R6588 T8985 T8991 themeOf SerpinB2,mRNA expression
R6590 T8991 T8990 themeOf mRNA expression,inducible
R6591 T8991 T8989 themeOf mRNA expression,induction

test3

Id Subject Object Predicate Lexical cue
T9005 53-68 Transcription denotes mRNA expression
T9004 44-52 Protein denotes SerpinB2
T9003 34-43 Positive_regulation denotes inducible
T9002 17-26 Positive_regulation denotes induction
T8996 44-52 Protein denotes SerpinB2
R6592 T9004 T9005 themeOf SerpinB2,mRNA expression
R6593 T9005 T9003 themeOf mRNA expression,inducible
R6594 T9005 T9002 themeOf mRNA expression,induction