PMC:3589482 / 17661-17847 JSONTXT

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    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T9354","span":{"begin":185,"end":186},"obj":"."},{"id":"T9353","span":{"begin":184,"end":185},"obj":"NNP"},{"id":"T9352","span":{"begin":182,"end":184},"obj":"CD"},{"id":"T9351","span":{"begin":181,"end":182},"obj":"NNP"},{"id":"T9350","span":{"begin":179,"end":180},"obj":":"},{"id":"T9349","span":{"begin":178,"end":179},"obj":"NNP"},{"id":"T9348","span":{"begin":177,"end":178},"obj":"CD"},{"id":"T9347","span":{"begin":176,"end":177},"obj":"VBP"},{"id":"T9346","span":{"begin":170,"end":175},"obj":"NNS"},{"id":"T9345","span":{"begin":158,"end":169},"obj":"NN"},{"id":"T9344","span":{"begin":152,"end":157},"obj":"NN"},{"id":"T9343","span":{"begin":141,"end":151},"obj":"JJ"},{"id":"T9342","span":{"begin":135,"end":140},"obj":"JJ"},{"id":"T9341","span":{"begin":131,"end":134},"obj":"CC"},{"id":"T9340","span":{"begin":119,"end":130},"obj":"NNS"},{"id":"T9339","span":{"begin":108,"end":118},"obj":"JJ"},{"id":"T9338","span":{"begin":101,"end":107},"obj":"JJ"},{"id":"T9337","span":{"begin":98,"end":100},"obj":"IN"},{"id":"T9336","span":{"begin":87,"end":97},"obj":"RB"},{"id":"T9335","span":{"begin":78,"end":86},"obj":"VBN"},{"id":"T9334","span":{"begin":73,"end":77},"obj":"VBN"},{"id":"T9333","span":{"begin":69,"end":72},"obj":"VBZ"},{"id":"T9332","span":{"begin":58,"end":68},"obj":"NN"},{"id":"T9331","span":{"begin":53,"end":57},"obj":"NNP"},{"id":"T9330","span":{"begin":44,"end":52},"obj":"NNP"},{"id":"T9329","span":{"begin":30,"end":43},"obj":"JJ"},{"id":"T9328","span":{"begin":27,"end":29},"obj":"IN"},{"id":"T9327","span":{"begin":17,"end":26},"obj":"NN"},{"id":"T9326","span":{"begin":10,"end":16},"obj":"JJ"},{"id":"T9325","span":{"begin":2,"end":9},"obj":"JJ"},{"id":"T9324","span":{"begin":0,"end":1},"obj":"DT"}],"relations":[{"id":"R6826","pred":"det","subj":"T9324","obj":"T9327"},{"id":"R6827","pred":"amod","subj":"T9325","obj":"T9327"},{"id":"R6828","pred":"amod","subj":"T9326","obj":"T9327"},{"id":"R6829","pred":"nsubjpass","subj":"T9327","obj":"T9335"},{"id":"R6830","pred":"prep","subj":"T9328","obj":"T9327"},{"id":"R6831","pred":"amod","subj":"T9329","obj":"T9332"},{"id":"R6832","pred":"compound","subj":"T9330","obj":"T9331"},{"id":"R6833","pred":"compound","subj":"T9331","obj":"T9332"},{"id":"R6834","pred":"pobj","subj":"T9332","obj":"T9328"},{"id":"R6835","pred":"aux","subj":"T9333","obj":"T9335"},{"id":"R6836","pred":"auxpass","subj":"T9334","obj":"T9335"},{"id":"R6837","pred":"ROOT","subj":"T9335","obj":"T9335"},{"id":"R6838","pred":"advmod","subj":"T9336","obj":"T9335"},{"id":"R6839","pred":"prep","subj":"T9337","obj":"T9335"},{"id":"R6840","pred":"amod","subj":"T9338","obj":"T9340"},{"id":"R6841","pred":"amod","subj":"T9339","obj":"T9340"},{"id":"R6842","pred":"pobj","subj":"T9340","obj":"T9337"},{"id":"R6843","pred":"cc","subj":"T9341","obj":"T9340"},{"id":"R6844","pred":"amod","subj":"T9342","obj":"T9344"},{"id":"R6845","pred":"compound","subj":"T9343","obj":"T9344"},{"id":"R6846","pred":"compound","subj":"T9344","obj":"T9346"},{"id":"R6847","pred":"compound","subj":"T9345","obj":"T9346"},{"id":"R6848","pred":"conj","subj":"T9346","obj":"T9340"},{"id":"R6849","pred":"nmod","subj":"T9347","obj":"T9349"},{"id":"R6850","pred":"nummod","subj":"T9348","obj":"T9349"},{"id":"R6851","pred":"npadvmod","subj":"T9349","obj":"T9335"},{"id":"R6852","pred":"punct","subj":"T9350","obj":"T9349"},{"id":"R6853","pred":"conj","subj":"T9351","obj":"T9349"},{"id":"R6854","pred":"nummod","subj":"T9352","obj":"T9353"},{"id":"R6855","pred":"conj","subj":"T9353","obj":"T9349"},{"id":"R6856","pred":"punct","subj":"T9354","obj":"T9335"}],"text":"A similar strong induction of LPS-inducible SerpinB2 mRNA expression has been reported previously in murine peritoneal macrophages and human peripheral blood mononuclear cells [4]; [32]."}

    2_test

    {"project":"2_test","denotations":[{"id":"23472114-11001915-87899176","span":{"begin":182,"end":184},"obj":"11001915"},{"id":"T57168","span":{"begin":182,"end":184},"obj":"11001915"}],"text":"A similar strong induction of LPS-inducible SerpinB2 mRNA expression has been reported previously in murine peritoneal macrophages and human peripheral blood mononuclear cells [4]; [32]."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T9120","span":{"begin":184,"end":185},"obj":"-RRB-"},{"id":"T9119","span":{"begin":182,"end":184},"obj":"CD"},{"id":"T9118","span":{"begin":181,"end":182},"obj":"-LRB-"},{"id":"T9117","span":{"begin":179,"end":180},"obj":"-COLON-"},{"id":"T9116","span":{"begin":178,"end":179},"obj":"-RRB-"},{"id":"T9115","span":{"begin":177,"end":178},"obj":"CD"},{"id":"T9114","span":{"begin":176,"end":177},"obj":"-LRB-"},{"id":"T9113","span":{"begin":170,"end":175},"obj":"NN"},{"id":"T9112","span":{"begin":158,"end":169},"obj":"JJ"},{"id":"T9111","span":{"begin":152,"end":157},"obj":"NN"},{"id":"T9110","span":{"begin":141,"end":151},"obj":"JJ"},{"id":"T9109","span":{"begin":135,"end":140},"obj":"JJ"},{"id":"T9108","span":{"begin":131,"end":134},"obj":"CC"},{"id":"T9107","span":{"begin":119,"end":130},"obj":"NN"},{"id":"T9106","span":{"begin":108,"end":118},"obj":"JJ"},{"id":"T9105","span":{"begin":101,"end":107},"obj":"JJ"},{"id":"T9104","span":{"begin":98,"end":100},"obj":"IN"},{"id":"T9103","span":{"begin":87,"end":97},"obj":"RB"},{"id":"T9102","span":{"begin":78,"end":86},"obj":"VB"},{"id":"T9101","span":{"begin":73,"end":77},"obj":"VB"},{"id":"T9100","span":{"begin":69,"end":72},"obj":"VB"},{"id":"T9099","span":{"begin":58,"end":68},"obj":"NN"},{"id":"T9098","span":{"begin":53,"end":57},"obj":"NN"},{"id":"T9097","span":{"begin":44,"end":52},"obj":"NN"},{"id":"T9096","span":{"begin":30,"end":43},"obj":"JJ"},{"id":"T9095","span":{"begin":27,"end":29},"obj":"IN"},{"id":"T9094","span":{"begin":17,"end":26},"obj":"NN"},{"id":"T9093","span":{"begin":10,"end":16},"obj":"JJ"},{"id":"T9092","span":{"begin":2,"end":9},"obj":"JJ"},{"id":"T9091","span":{"begin":0,"end":1},"obj":"DT"}],"relations":[{"id":"R6649","pred":"arg1Of","subj":"T9094","obj":"T9091"},{"id":"R6650","pred":"arg1Of","subj":"T9094","obj":"T9092"},{"id":"R6651","pred":"arg1Of","subj":"T9094","obj":"T9093"},{"id":"R6652","pred":"arg1Of","subj":"T9094","obj":"T9095"},{"id":"R6653","pred":"arg1Of","subj":"T9094","obj":"T9100"},{"id":"R6654","pred":"arg1Of","subj":"T9094","obj":"T9101"},{"id":"R6655","pred":"arg2Of","subj":"T9094","obj":"T9102"},{"id":"R6656","pred":"arg2Of","subj":"T9099","obj":"T9095"},{"id":"R6657","pred":"arg1Of","subj":"T9099","obj":"T9096"},{"id":"R6658","pred":"arg1Of","subj":"T9099","obj":"T9097"},{"id":"R6659","pred":"arg1Of","subj":"T9099","obj":"T9098"},{"id":"R6660","pred":"arg2Of","subj":"T9102","obj":"T9100"},{"id":"R6661","pred":"arg2Of","subj":"T9102","obj":"T9101"},{"id":"R6662","pred":"arg1Of","subj":"T9102","obj":"T9103"},{"id":"R6663","pred":"arg1Of","subj":"T9102","obj":"T9104"},{"id":"R6664","pred":"arg1Of","subj":"T9102","obj":"T9114"},{"id":"R6665","pred":"arg1Of","subj":"T9102","obj":"T9117"},{"id":"R6666","pred":"arg1Of","subj":"T9102","obj":"T9118"},{"id":"R6667","pred":"arg1Of","subj":"T9107","obj":"T9105"},{"id":"R6668","pred":"arg1Of","subj":"T9107","obj":"T9106"},{"id":"R6669","pred":"arg1Of","subj":"T9107","obj":"T9108"},{"id":"R6670","pred":"arg2Of","subj":"T9108","obj":"T9104"},{"id":"R6671","pred":"arg2Of","subj":"T9113","obj":"T9108"},{"id":"R6672","pred":"arg1Of","subj":"T9113","obj":"T9109"},{"id":"R6673","pred":"arg1Of","subj":"T9113","obj":"T9110"},{"id":"R6674","pred":"arg1Of","subj":"T9113","obj":"T9111"},{"id":"R6675","pred":"arg1Of","subj":"T9113","obj":"T9112"},{"id":"R6676","pred":"arg2Of","subj":"T9115","obj":"T9114"},{"id":"R6677","pred":"arg3Of","subj":"T9116","obj":"T9114"},{"id":"R6678","pred":"arg2Of","subj":"T9119","obj":"T9118"},{"id":"R6679","pred":"arg3Of","subj":"T9120","obj":"T9118"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"A similar strong induction of LPS-inducible SerpinB2 mRNA expression has been reported previously in murine peritoneal macrophages and human peripheral blood mononuclear cells [4]; [32]."}

    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T9035","span":{"begin":44,"end":52},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"A similar strong induction of LPS-inducible SerpinB2 mRNA expression has been reported previously in murine peritoneal macrophages and human peripheral blood mononuclear cells [4]; [32]."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T9196","span":{"begin":44,"end":52},"obj":"http://www.uniprot.org/uniprot/P05120"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"A similar strong induction of LPS-inducible SerpinB2 mRNA expression has been reported previously in murine peritoneal macrophages and human peripheral blood mononuclear cells [4]; [32]."}

    UBERON-AE

    {"project":"UBERON-AE","denotations":[{"id":"T9012","span":{"begin":152,"end":157},"obj":"http://purl.obolibrary.org/obo/UBERON_0000178"}],"text":"A similar strong induction of LPS-inducible SerpinB2 mRNA expression has been reported previously in murine peritoneal macrophages and human peripheral blood mononuclear cells [4]; [32]."}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T9040","span":{"begin":170,"end":175},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"A similar strong induction of LPS-inducible SerpinB2 mRNA expression has been reported previously in murine peritoneal macrophages and human peripheral blood mononuclear cells [4]; [32]."}

    sentences

    {"project":"sentences","denotations":[{"id":"T9015","span":{"begin":0,"end":186},"obj":"Sentence"},{"id":"T115","span":{"begin":0,"end":186},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"A similar strong induction of LPS-inducible SerpinB2 mRNA expression has been reported previously in murine peritoneal macrophages and human peripheral blood mononuclear cells [4]; [32]."}

    simple1

    {"project":"simple1","denotations":[{"id":"T9049","span":{"begin":44,"end":52},"obj":"Protein"}],"text":"A similar strong induction of LPS-inducible SerpinB2 mRNA expression has been reported previously in murine peritoneal macrophages and human peripheral blood mononuclear cells [4]; [32]."}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T9189","span":{"begin":17,"end":26},"obj":"Positive_regulation"},{"id":"T9188","span":{"begin":58,"end":68},"obj":"Transcription"},{"id":"T9187","span":{"begin":30,"end":43},"obj":"Positive_regulation"},{"id":"T9183","span":{"begin":44,"end":52},"obj":"Protein"}],"relations":[{"id":"R6741","pred":"themeOf","subj":"T9183","obj":"T9188"},{"id":"R6744","pred":"themeOf","subj":"T9188","obj":"T9189"},{"id":"R6745","pred":"themeOf","subj":"T9188","obj":"T9187"}],"text":"A similar strong induction of LPS-inducible SerpinB2 mRNA expression has been reported previously in murine peritoneal macrophages and human peripheral blood mononuclear cells [4]; [32]."}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T9228","span":{"begin":58,"end":68},"obj":"Transcription"},{"id":"T9227","span":{"begin":30,"end":43},"obj":"Positive_regulation"},{"id":"T9226","span":{"begin":17,"end":26},"obj":"Positive_regulation"},{"id":"T9223","span":{"begin":44,"end":52},"obj":"Protein"}],"relations":[{"id":"R6760","pred":"themeOf","subj":"T9223","obj":"T9228"},{"id":"R6763","pred":"themeOf","subj":"T9228","obj":"T9226"},{"id":"R6764","pred":"themeOf","subj":"T9228","obj":"T9227"}],"text":"A similar strong induction of LPS-inducible SerpinB2 mRNA expression has been reported previously in murine peritoneal macrophages and human peripheral blood mononuclear cells [4]; [32]."}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T9208","span":{"begin":30,"end":43},"obj":"Positive_regulation"},{"id":"T9207","span":{"begin":17,"end":26},"obj":"Positive_regulation"},{"id":"T9206","span":{"begin":58,"end":68},"obj":"Transcription"},{"id":"T9201","span":{"begin":44,"end":52},"obj":"Protein"}],"relations":[{"id":"R6750","pred":"themeOf","subj":"T9201","obj":"T9206"},{"id":"R6753","pred":"themeOf","subj":"T9206","obj":"T9207"},{"id":"R6754","pred":"themeOf","subj":"T9206","obj":"T9208"}],"text":"A similar strong induction of LPS-inducible SerpinB2 mRNA expression has been reported previously in murine peritoneal macrophages and human peripheral blood mononuclear cells [4]; [32]."}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T9281","span":{"begin":27,"end":68},"obj":"Gene_expression"},{"id":"T9276","span":{"begin":135,"end":175},"obj":"Entity"},{"id":"T9265","span":{"begin":101,"end":130},"obj":"Entity"},{"id":"T9261","span":{"begin":44,"end":57},"obj":"Protein"},{"id":"T9257","span":{"begin":44,"end":52},"obj":"Protein"}],"relations":[{"id":"R6781","pred":"themeOf","subj":"T9261","obj":"T9281"}],"text":"A similar strong induction of LPS-inducible SerpinB2 mRNA expression has been reported previously in murine peritoneal macrophages and human peripheral blood mononuclear cells [4]; [32]."}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T9238","span":{"begin":17,"end":26},"obj":"Positive_regulation"},{"id":"T9237","span":{"begin":30,"end":43},"obj":"Positive_regulation"},{"id":"T9236","span":{"begin":58,"end":68},"obj":"Gene_expression"},{"id":"T9235","span":{"begin":44,"end":57},"obj":"Protein"}],"relations":[{"id":"R6767","pred":"themeOf","subj":"T9235","obj":"T9236"},{"id":"R6768","pred":"themeOf","subj":"T9236","obj":"T9237"},{"id":"R6769","pred":"themeOf","subj":"T9237","obj":"T9238"}],"text":"A similar strong induction of LPS-inducible SerpinB2 mRNA expression has been reported previously in murine peritoneal macrophages and human peripheral blood mononuclear cells [4]; [32]."}

    testone

    {"project":"testone","denotations":[{"id":"T8991","span":{"begin":53,"end":68},"obj":"Transcription"},{"id":"T8990","span":{"begin":34,"end":43},"obj":"Positive_regulation"},{"id":"T8989","span":{"begin":17,"end":26},"obj":"Positive_regulation"},{"id":"T8985","span":{"begin":44,"end":52},"obj":"Protein"}],"relations":[{"id":"R6588","pred":"themeOf","subj":"T8985","obj":"T8991"},{"id":"R6590","pred":"themeOf","subj":"T8991","obj":"T8990"},{"id":"R6591","pred":"themeOf","subj":"T8991","obj":"T8989"}],"text":"A similar strong induction of LPS-inducible SerpinB2 mRNA expression has been reported previously in murine peritoneal macrophages and human peripheral blood mononuclear cells [4]; [32]."}

    test3

    {"project":"test3","denotations":[{"id":"T9005","span":{"begin":53,"end":68},"obj":"Transcription"},{"id":"T9004","span":{"begin":44,"end":52},"obj":"Protein"},{"id":"T9003","span":{"begin":34,"end":43},"obj":"Positive_regulation"},{"id":"T9002","span":{"begin":17,"end":26},"obj":"Positive_regulation"},{"id":"T8996","span":{"begin":44,"end":52},"obj":"Protein"}],"relations":[{"id":"R6592","pred":"themeOf","subj":"T9004","obj":"T9005"},{"id":"R6593","pred":"themeOf","subj":"T9005","obj":"T9003"},{"id":"R6594","pred":"themeOf","subj":"T9005","obj":"T9002"}],"text":"A similar strong induction of LPS-inducible SerpinB2 mRNA expression has been reported previously in murine peritoneal macrophages and human peripheral blood mononuclear cells [4]; [32]."}