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PMC:3589482 / 17496-17660 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9323 163-164 . denotes .
T9322 162-163 -RRB- denotes )
T9321 160-162 NNP denotes 1A
T9320 155-159 NNP denotes Fig.
T9319 154-155 -LRB- denotes (
T9318 150-153 NNS denotes hrs
T9317 147-149 CD denotes 24
T9316 144-146 IN denotes at
T9315 137-143 NNS denotes levels
T9314 129-136 JJ denotes maximal
T9313 120-128 VBG denotes reaching
T9312 118-119 , denotes ,
T9311 109-118 NN denotes challenge
T9310 105-108 NNP denotes LPS
T9309 95-104 VBG denotes following
T9308 91-94 NN denotes min
T9307 88-90 CD denotes 30
T9306 85-87 IN denotes as
T9305 79-84 JJ denotes early
T9304 76-78 IN denotes as
T9303 65-75 JJ denotes detectable
T9302 61-64 VBD denotes was
T9301 56-60 NNP denotes mRNA
T9300 47-55 NNP denotes SerpinB2
T9299 45-46 , denotes ,
T9298 42-45 NNP denotes LPS
T9297 39-41 TO denotes to
T9296 31-38 VBN denotes exposed
T9295 26-30 VBD denotes were
T9294 14-25 NNS denotes macrophages
T9293 11-13 CD denotes .7
T9292 5-11 NNP denotes RAW264
T9291 0-4 WRB denotes When
R6793 T9291 T9296 advmod When,exposed
R6794 T9292 T9296 nsubjpass RAW264,exposed
R6795 T9293 T9292 nummod .7,RAW264
R6796 T9294 T9296 nsubjpass macrophages,exposed
R6797 T9295 T9296 auxpass were,exposed
R6798 T9296 T9302 advcl exposed,was
R6799 T9297 T9296 prep to,exposed
R6800 T9298 T9297 pobj LPS,to
R6801 T9299 T9298 punct ",",LPS
R6802 T9300 T9301 compound SerpinB2,mRNA
R6803 T9301 T9298 appos mRNA,LPS
R6805 T9303 T9302 acomp detectable,was
R6806 T9304 T9305 advmod as,early
R6807 T9305 T9303 advmod early,detectable
R6808 T9306 T9305 prep as,early
R6809 T9307 T9308 nummod 30,min
R6810 T9308 T9306 pobj min,as
R6811 T9309 T9308 prep following,min
R6812 T9310 T9311 compound LPS,challenge
R6813 T9311 T9309 pobj challenge,following
R6814 T9312 T9308 punct ",",min
R6815 T9313 T9302 advcl reaching,was
R6816 T9314 T9315 amod maximal,levels
R6817 T9315 T9313 dobj levels,reaching
R6818 T9316 T9315 prep at,levels
R6819 T9317 T9318 nummod 24,hrs
R6820 T9318 T9316 pobj hrs,at
R6821 T9319 T9318 punct (,hrs
R6822 T9320 T9321 compound Fig.,1A
R6823 T9321 T9318 appos 1A,hrs
R6824 T9322 T9318 punct ),hrs
R6825 T9323 T9302 punct .,was

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9090 162-163 -RRB- denotes )
T9089 160-162 NN denotes 1A
T9088 155-159 NNP denotes Fig.
T9087 154-155 -LRB- denotes (
T9086 150-153 NN denotes hrs
T9085 147-149 CD denotes 24
T9084 144-146 IN denotes at
T9083 137-143 NN denotes levels
T9082 129-136 JJ denotes maximal
T9081 120-128 VB denotes reaching
T9080 118-119 -COMMA- denotes ,
T9079 109-118 NN denotes challenge
T9078 105-108 NN denotes LPS
T9077 95-104 VB denotes following
T9076 91-94 NN denotes min
T9075 88-90 CD denotes 30
T9074 85-87 IN denotes as
T9073 79-84 RB denotes early
T9072 76-78 RB denotes as
T9071 65-75 JJ denotes detectable
T9070 61-64 VB denotes was
T9069 56-60 NN denotes mRNA
T9068 47-55 NN denotes SerpinB2
T9067 45-46 -COMMA- denotes ,
T9066 42-45 NN denotes LPS
T9065 39-41 TO denotes to
T9064 31-38 VB denotes exposed
T9063 26-30 VB denotes were
T9062 14-25 NN denotes macrophages
T9061 5-13 NN denotes RAW264.7
T9060 0-4 WRB denotes When
R6617 T9062 T9061 arg1Of macrophages,RAW264.7
R6618 T9062 T9063 arg1Of macrophages,were
R6619 T9062 T9064 arg2Of macrophages,exposed
R6620 T9064 T9060 arg2Of exposed,When
R6621 T9064 T9063 arg2Of exposed,were
R6622 T9064 T9065 arg1Of exposed,to
R6623 T9066 T9065 arg2Of LPS,to
R6624 T9069 T9068 arg1Of mRNA,SerpinB2
R6625 T9069 T9070 arg1Of mRNA,was
R6626 T9069 T9071 arg1Of mRNA,detectable
R6627 T9070 T9060 arg1Of was,When
R6628 T9070 T9067 arg1Of was,","
R6629 T9070 T9077 arg1Of was,following
R6630 T9070 T9080 arg1Of was,","
R6631 T9071 T9070 arg2Of detectable,was
R6632 T9071 T9073 arg1Of detectable,early
R6633 T9073 T9072 arg1Of early,as
R6634 T9073 T9074 arg1Of early,as
R6635 T9076 T9074 arg2Of min,as
R6636 T9076 T9075 arg1Of min,30
R6637 T9079 T9077 arg2Of challenge,following
R6638 T9079 T9078 arg1Of challenge,LPS
R6639 T9081 T9070 arg3Of reaching,was
R6640 T9081 T9084 arg1Of reaching,at
R6641 T9083 T9081 arg2Of levels,reaching
R6642 T9083 T9082 arg1Of levels,maximal
R6643 T9086 T9084 arg2Of hrs,at
R6644 T9086 T9085 arg1Of hrs,24
R6645 T9086 T9087 arg1Of hrs,(
R6646 T9089 T9087 arg2Of 1A,(
R6647 T9089 T9088 arg1Of 1A,Fig.
R6648 T9090 T9087 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T9034 47-55 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9195 47-55 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

sentences

Id Subject Object Predicate Lexical cue
T9014 0-164 Sentence denotes When RAW264.7 macrophages were exposed to LPS, SerpinB2 mRNA was detectable as early as 30 min following LPS challenge, reaching maximal levels at 24 hrs (Fig. 1A).
T114 0-164 Sentence denotes When RAW264.7 macrophages were exposed to LPS, SerpinB2 mRNA was detectable as early as 30 min following LPS challenge, reaching maximal levels at 24 hrs (Fig. 1A).

simple1

Id Subject Object Predicate Lexical cue
T9048 47-55 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T9186 65-75 Transcription denotes detectable
T9182 47-55 Protein denotes SerpinB2
R6740 T9182 T9186 themeOf SerpinB2,detectable

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T9222 47-55 Protein denotes SerpinB2

DLUT931

Id Subject Object Predicate Lexical cue
T9205 56-60 Transcription denotes mRNA
T9200 47-55 Protein denotes SerpinB2
R6749 T9200 T9205 themeOf SerpinB2,mRNA

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T9277 105-108 Entity denotes LPS
T9271 56-60 Protein denotes mRNA
T9263 147-163 Protein denotes 24 hrs (Fig. 1A)
T9262 47-90 Protein denotes SerpinB2 mRNA was detectable as early as 30
T9260 5-25 Entity denotes RAW264.7 macrophages
T9259 42-46 Entity denotes LPS,

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T9234 47-60 Protein denotes SerpinB2 mRNA

testone

Id Subject Object Predicate Lexical cue
T8988 95-104 Positive_regulation denotes following
T8984 47-55 Protein denotes SerpinB2

test3

Id Subject Object Predicate Lexical cue
T9001 95-104 Positive_regulation denotes following
T9000 47-55 Protein denotes SerpinB2
T8995 47-55 Protein denotes SerpinB2