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PMC:3589482 / 15973-16190 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T8689 216-217 . denotes .
T8688 213-216 NN denotes ice
T8687 210-212 IN denotes on
T8686 200-209 VBN denotes collected
T8685 196-199 CC denotes and
T8684 188-195 VBD denotes scraped
T8683 186-187 , denotes ,
T8682 183-186 NNP denotes PBS
T8681 178-182 JJ denotes cold
T8680 173-177 IN denotes with
T8679 166-172 VBN denotes washed
T8678 161-165 VBD denotes were
T8677 155-160 NNS denotes cells
T8676 153-154 , denotes ,
T8675 142-153 NN denotes temperature
T8674 137-141 NN denotes room
T8673 134-136 IN denotes at
T8672 130-133 NN denotes min
T8671 128-129 CD denotes 5
T8670 124-127 IN denotes for
T8669 116-123 NN denotes glycine
T8668 111-115 IN denotes with
T8667 98-110 VBG denotes neutralizing
T8666 94-97 CC denotes and
T8665 90-93 NN denotes min
T8664 87-89 CD denotes 10
T8663 83-86 IN denotes for
T8662 71-82 NN denotes temperature
T8661 66-70 NN denotes room
T8660 63-65 IN denotes at
T8659 50-62 NN denotes formaldehyde
T8658 48-49 NN denotes %
T8657 47-48 CD denotes 1
T8656 42-46 IN denotes with
T8655 32-41 NN denotes chromatin
T8654 28-31 DT denotes the
T8653 15-27 VBG denotes crosslinking
T8652 9-14 IN denotes after
T8651 7-8 , denotes ,
T8650 0-7 RB denotes Briefly
R6269 T8650 T8679 advmod Briefly,washed
R6270 T8651 T8679 punct ",",washed
R6271 T8652 T8679 prep after,washed
R6272 T8653 T8652 pcomp crosslinking,after
R6273 T8654 T8655 det the,chromatin
R6274 T8655 T8653 dobj chromatin,crosslinking
R6275 T8656 T8653 prep with,crosslinking
R6276 T8657 T8658 nummod 1,%
R6277 T8658 T8659 compound %,formaldehyde
R6278 T8659 T8656 pobj formaldehyde,with
R6279 T8660 T8659 prep at,formaldehyde
R6280 T8661 T8662 compound room,temperature
R6281 T8662 T8660 pobj temperature,at
R6282 T8663 T8653 prep for,crosslinking
R6283 T8664 T8665 nummod 10,min
R6284 T8665 T8663 pobj min,for
R6285 T8666 T8653 cc and,crosslinking
R6286 T8667 T8653 conj neutralizing,crosslinking
R6287 T8668 T8667 prep with,neutralizing
R6288 T8669 T8668 pobj glycine,with
R6289 T8670 T8667 prep for,neutralizing
R6290 T8671 T8672 nummod 5,min
R6291 T8672 T8670 pobj min,for
R6292 T8673 T8672 prep at,min
R6293 T8674 T8675 compound room,temperature
R6294 T8675 T8673 pobj temperature,at
R6295 T8676 T8679 punct ",",washed
R6296 T8677 T8679 nsubjpass cells,washed
R6297 T8678 T8679 auxpass were,washed
R6298 T8679 T8679 ROOT washed,washed
R6299 T8680 T8679 prep with,washed
R6300 T8681 T8682 amod cold,PBS
R6301 T8682 T8680 pobj PBS,with
R6302 T8683 T8679 punct ",",washed
R6303 T8684 T8679 conj scraped,washed
R6304 T8685 T8684 cc and,scraped
R6305 T8686 T8684 conj collected,scraped
R6306 T8687 T8686 prep on,collected
R6307 T8688 T8687 pobj ice,on
R6308 T8689 T8679 punct .,washed

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T8372 213-216 NN denotes ice
T8371 210-212 IN denotes on
T8354 124-127 IN denotes for
T8353 116-123 NN denotes glycine
T8352 111-115 IN denotes with
T8351 98-110 VB denotes neutralizing
T8350 94-97 CC denotes and
T8349 90-93 NN denotes min
T8348 87-89 CD denotes 10
T8347 83-86 IN denotes for
T8346 71-82 NN denotes temperature
T8345 66-70 NN denotes room
T8344 63-65 IN denotes at
T8343 50-62 NN denotes formaldehyde
T8342 48-49 NN denotes %
T8341 47-48 CD denotes 1
T8340 42-46 IN denotes with
T8339 32-41 NN denotes chromatin
T8338 28-31 DT denotes the
T8337 15-27 VB denotes crosslinking
T8336 9-14 IN denotes after
T8335 7-8 -COMMA- denotes ,
T8334 0-7 RB denotes Briefly
T8370 200-209 VB denotes collected
T8369 196-199 CC denotes and
T8368 188-195 VB denotes scraped
T8367 186-187 -COMMA- denotes ,
T8366 183-186 NNP denotes PBS
T8365 178-182 JJ denotes cold
T8364 173-177 IN denotes with
T8363 166-172 VB denotes washed
T8362 161-165 VB denotes were
T8361 155-160 NN denotes cells
T8360 153-154 -COMMA- denotes ,
T8359 142-153 NN denotes temperature
T8358 137-141 NN denotes room
T8357 134-136 IN denotes at
T8356 130-133 NN denotes min
T8355 128-129 CD denotes 5
R6004 T8337 T8350 arg1Of crosslinking,and
R6005 T8339 T8337 arg2Of chromatin,crosslinking
R6006 T8339 T8338 arg1Of chromatin,the
R6007 T8339 T8340 arg1Of chromatin,with
R6008 T8339 T8347 arg1Of chromatin,for
R6009 T8341 T8342 arg1Of 1,%
R6010 T8343 T8340 arg2Of formaldehyde,with
R6011 T8343 T8341 arg1Of formaldehyde,1
R6012 T8343 T8344 arg1Of formaldehyde,at
R6013 T8346 T8344 arg2Of temperature,at
R6014 T8346 T8345 arg1Of temperature,room
R6015 T8349 T8347 arg2Of min,for
R6016 T8349 T8348 arg1Of min,10
R6017 T8350 T8336 arg2Of and,after
R6018 T8351 T8350 arg2Of neutralizing,and
R6019 T8351 T8352 arg1Of neutralizing,with
R6020 T8351 T8354 arg1Of neutralizing,for
R6021 T8353 T8352 arg2Of glycine,with
R6022 T8356 T8354 arg2Of min,for
R6023 T8356 T8355 arg1Of min,5
R6024 T8356 T8357 arg1Of min,at
R6025 T8359 T8357 arg2Of temperature,at
R6026 T8359 T8358 arg1Of temperature,room
R6027 T8361 T8337 arg1Of cells,crosslinking
R6028 T8361 T8351 arg1Of cells,neutralizing
R6029 T8361 T8362 arg1Of cells,were
R6030 T8361 T8363 arg2Of cells,washed
R6031 T8361 T8368 arg2Of cells,scraped
R6032 T8361 T8370 arg2Of cells,collected
R6033 T8363 T8364 arg1Of washed,with
R6034 T8363 T8367 arg1Of washed,","
R6035 T8366 T8364 arg2Of PBS,with
R6036 T8366 T8365 arg1Of PBS,cold
R6037 T8367 T8369 arg1Of ",",and
R6038 T8368 T8367 arg2Of scraped,","
R6039 T8369 T8334 arg1Of and,Briefly
R6040 T8369 T8335 arg1Of and,","
R6041 T8369 T8336 arg1Of and,after
R6042 T8369 T8360 arg1Of and,","
R6043 T8369 T8362 arg2Of and,were
R6044 T8370 T8369 arg2Of collected,and
R6045 T8370 T8371 arg1Of collected,on
R6046 T8372 T8371 arg2Of ice,on

GO-CC

Id Subject Object Predicate Lexical cue
T8295 155-160 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T8292 32-41 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin

sentences

Id Subject Object Predicate Lexical cue
T8269 0-217 Sentence denotes Briefly, after crosslinking the chromatin with 1% formaldehyde at room temperature for 10 min and neutralizing with glycine for 5 min at room temperature, cells were washed with cold PBS, scraped and collected on ice.
T100 0-217 Sentence denotes Briefly, after crosslinking the chromatin with 1% formaldehyde at room temperature for 10 min and neutralizing with glycine for 5 min at room temperature, cells were washed with cold PBS, scraped and collected on ice.

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T8616 155-160 Entity denotes cells
T8612 116-123 Entity denotes glycine
T8608 47-62 Entity denotes 1% formaldehyde
T8607 28-93 Entity denotes the chromatin with 1% formaldehyde at room temperature for 10 min
T8605 213-216 Entity denotes ice