PMC:3589482 / 15973-16190 JSONTXT

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    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T8689","span":{"begin":216,"end":217},"obj":"."},{"id":"T8688","span":{"begin":213,"end":216},"obj":"NN"},{"id":"T8687","span":{"begin":210,"end":212},"obj":"IN"},{"id":"T8686","span":{"begin":200,"end":209},"obj":"VBN"},{"id":"T8685","span":{"begin":196,"end":199},"obj":"CC"},{"id":"T8684","span":{"begin":188,"end":195},"obj":"VBD"},{"id":"T8683","span":{"begin":186,"end":187},"obj":","},{"id":"T8682","span":{"begin":183,"end":186},"obj":"NNP"},{"id":"T8681","span":{"begin":178,"end":182},"obj":"JJ"},{"id":"T8680","span":{"begin":173,"end":177},"obj":"IN"},{"id":"T8679","span":{"begin":166,"end":172},"obj":"VBN"},{"id":"T8678","span":{"begin":161,"end":165},"obj":"VBD"},{"id":"T8677","span":{"begin":155,"end":160},"obj":"NNS"},{"id":"T8676","span":{"begin":153,"end":154},"obj":","},{"id":"T8675","span":{"begin":142,"end":153},"obj":"NN"},{"id":"T8674","span":{"begin":137,"end":141},"obj":"NN"},{"id":"T8673","span":{"begin":134,"end":136},"obj":"IN"},{"id":"T8672","span":{"begin":130,"end":133},"obj":"NN"},{"id":"T8671","span":{"begin":128,"end":129},"obj":"CD"},{"id":"T8670","span":{"begin":124,"end":127},"obj":"IN"},{"id":"T8669","span":{"begin":116,"end":123},"obj":"NN"},{"id":"T8668","span":{"begin":111,"end":115},"obj":"IN"},{"id":"T8667","span":{"begin":98,"end":110},"obj":"VBG"},{"id":"T8666","span":{"begin":94,"end":97},"obj":"CC"},{"id":"T8665","span":{"begin":90,"end":93},"obj":"NN"},{"id":"T8664","span":{"begin":87,"end":89},"obj":"CD"},{"id":"T8663","span":{"begin":83,"end":86},"obj":"IN"},{"id":"T8662","span":{"begin":71,"end":82},"obj":"NN"},{"id":"T8661","span":{"begin":66,"end":70},"obj":"NN"},{"id":"T8660","span":{"begin":63,"end":65},"obj":"IN"},{"id":"T8659","span":{"begin":50,"end":62},"obj":"NN"},{"id":"T8658","span":{"begin":48,"end":49},"obj":"NN"},{"id":"T8657","span":{"begin":47,"end":48},"obj":"CD"},{"id":"T8656","span":{"begin":42,"end":46},"obj":"IN"},{"id":"T8655","span":{"begin":32,"end":41},"obj":"NN"},{"id":"T8654","span":{"begin":28,"end":31},"obj":"DT"},{"id":"T8653","span":{"begin":15,"end":27},"obj":"VBG"},{"id":"T8652","span":{"begin":9,"end":14},"obj":"IN"},{"id":"T8651","span":{"begin":7,"end":8},"obj":","},{"id":"T8650","span":{"begin":0,"end":7},"obj":"RB"}],"relations":[{"id":"R6269","pred":"advmod","subj":"T8650","obj":"T8679"},{"id":"R6270","pred":"punct","subj":"T8651","obj":"T8679"},{"id":"R6271","pred":"prep","subj":"T8652","obj":"T8679"},{"id":"R6272","pred":"pcomp","subj":"T8653","obj":"T8652"},{"id":"R6273","pred":"det","subj":"T8654","obj":"T8655"},{"id":"R6274","pred":"dobj","subj":"T8655","obj":"T8653"},{"id":"R6275","pred":"prep","subj":"T8656","obj":"T8653"},{"id":"R6276","pred":"nummod","subj":"T8657","obj":"T8658"},{"id":"R6277","pred":"compound","subj":"T8658","obj":"T8659"},{"id":"R6278","pred":"pobj","subj":"T8659","obj":"T8656"},{"id":"R6279","pred":"prep","subj":"T8660","obj":"T8659"},{"id":"R6280","pred":"compound","subj":"T8661","obj":"T8662"},{"id":"R6281","pred":"pobj","subj":"T8662","obj":"T8660"},{"id":"R6282","pred":"prep","subj":"T8663","obj":"T8653"},{"id":"R6283","pred":"nummod","subj":"T8664","obj":"T8665"},{"id":"R6284","pred":"pobj","subj":"T8665","obj":"T8663"},{"id":"R6285","pred":"cc","subj":"T8666","obj":"T8653"},{"id":"R6286","pred":"conj","subj":"T8667","obj":"T8653"},{"id":"R6287","pred":"prep","subj":"T8668","obj":"T8667"},{"id":"R6288","pred":"pobj","subj":"T8669","obj":"T8668"},{"id":"R6289","pred":"prep","subj":"T8670","obj":"T8667"},{"id":"R6290","pred":"nummod","subj":"T8671","obj":"T8672"},{"id":"R6291","pred":"pobj","subj":"T8672","obj":"T8670"},{"id":"R6292","pred":"prep","subj":"T8673","obj":"T8672"},{"id":"R6293","pred":"compound","subj":"T8674","obj":"T8675"},{"id":"R6294","pred":"pobj","subj":"T8675","obj":"T8673"},{"id":"R6295","pred":"punct","subj":"T8676","obj":"T8679"},{"id":"R6296","pred":"nsubjpass","subj":"T8677","obj":"T8679"},{"id":"R6297","pred":"auxpass","subj":"T8678","obj":"T8679"},{"id":"R6298","pred":"ROOT","subj":"T8679","obj":"T8679"},{"id":"R6299","pred":"prep","subj":"T8680","obj":"T8679"},{"id":"R6300","pred":"amod","subj":"T8681","obj":"T8682"},{"id":"R6301","pred":"pobj","subj":"T8682","obj":"T8680"},{"id":"R6302","pred":"punct","subj":"T8683","obj":"T8679"},{"id":"R6303","pred":"conj","subj":"T8684","obj":"T8679"},{"id":"R6304","pred":"cc","subj":"T8685","obj":"T8684"},{"id":"R6305","pred":"conj","subj":"T8686","obj":"T8684"},{"id":"R6306","pred":"prep","subj":"T8687","obj":"T8686"},{"id":"R6307","pred":"pobj","subj":"T8688","obj":"T8687"},{"id":"R6308","pred":"punct","subj":"T8689","obj":"T8679"}],"text":"Briefly, after crosslinking the chromatin with 1% formaldehyde at room temperature for 10 min and neutralizing with glycine for 5 min at room temperature, cells were washed with cold PBS, scraped and collected on ice."}

    pmc-enju-pas

    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after crosslinking the chromatin with 1% formaldehyde at room temperature for 10 min and neutralizing with glycine for 5 min at room temperature, cells were washed with cold PBS, scraped and collected on ice."}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T8295","span":{"begin":155,"end":160},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T8292","span":{"begin":32,"end":41},"obj":"http://purl.obolibrary.org/obo/GO_0000785"}],"text":"Briefly, after crosslinking the chromatin with 1% formaldehyde at room temperature for 10 min and neutralizing with glycine for 5 min at room temperature, cells were washed with cold PBS, scraped and collected on ice."}

    sentences

    {"project":"sentences","denotations":[{"id":"T8269","span":{"begin":0,"end":217},"obj":"Sentence"},{"id":"T100","span":{"begin":0,"end":217},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Briefly, after crosslinking the chromatin with 1% formaldehyde at room temperature for 10 min and neutralizing with glycine for 5 min at room temperature, cells were washed with cold PBS, scraped and collected on ice."}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T8616","span":{"begin":155,"end":160},"obj":"Entity"},{"id":"T8612","span":{"begin":116,"end":123},"obj":"Entity"},{"id":"T8608","span":{"begin":47,"end":62},"obj":"Entity"},{"id":"T8607","span":{"begin":28,"end":93},"obj":"Entity"},{"id":"T8605","span":{"begin":213,"end":216},"obj":"Entity"}],"text":"Briefly, after crosslinking the chromatin with 1% formaldehyde at room temperature for 10 min and neutralizing with glycine for 5 min at room temperature, cells were washed with cold PBS, scraped and collected on ice."}