PMC:3589482 / 156-398 JSONTXT

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    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T815","span":{"begin":241,"end":242},"obj":"."},{"id":"T814","span":{"begin":231,"end":241},"obj":"NNS"},{"id":"T813","span":{"begin":219,"end":230},"obj":"NN"},{"id":"T812","span":{"begin":216,"end":218},"obj":"IN"},{"id":"T811","span":{"begin":205,"end":215},"obj":"NN"},{"id":"T810","span":{"begin":201,"end":204},"obj":"CC"},{"id":"T809","span":{"begin":199,"end":200},"obj":","},{"id":"T808","span":{"begin":191,"end":199},"obj":"NN"},{"id":"T807","span":{"begin":180,"end":190},"obj":"NN"},{"id":"T806","span":{"begin":178,"end":179},"obj":","},{"id":"T805","span":{"begin":170,"end":178},"obj":"NN"},{"id":"T804","span":{"begin":163,"end":169},"obj":"NN"},{"id":"T803","span":{"begin":160,"end":162},"obj":"IN"},{"id":"T802","span":{"begin":149,"end":159},"obj":"NN"},{"id":"T801","span":{"begin":145,"end":148},"obj":"DT"},{"id":"T800","span":{"begin":142,"end":144},"obj":"TO"},{"id":"T799","span":{"begin":135,"end":141},"obj":"VBN"},{"id":"T798","span":{"begin":132,"end":134},"obj":"VBZ"},{"id":"T797","span":{"begin":128,"end":131},"obj":"CC"},{"id":"T796","span":{"begin":120,"end":127},"obj":"NNS"},{"id":"T795","span":{"begin":107,"end":119},"obj":"JJ"},{"id":"T794","span":{"begin":104,"end":106},"obj":"TO"},{"id":"T793","span":{"begin":95,"end":103},"obj":"NN"},{"id":"T792","span":{"begin":92,"end":94},"obj":"IN"},{"id":"T791","span":{"begin":80,"end":91},"obj":"NNS"},{"id":"T790","span":{"begin":77,"end":79},"obj":"IN"},{"id":"T789","span":{"begin":69,"end":76},"obj":"VBN"},{"id":"T788","span":{"begin":62,"end":68},"obj":"RB"},{"id":"T787","span":{"begin":59,"end":61},"obj":"VBZ"},{"id":"T786","span":{"begin":57,"end":58},"obj":"-RRB-"},{"id":"T785","span":{"begin":52,"end":57},"obj":"NN"},{"id":"T784","span":{"begin":51,"end":52},"obj":"-LRB-"},{"id":"T783","span":{"begin":49,"end":50},"obj":"CD"},{"id":"T782","span":{"begin":44,"end":48},"obj":"NN"},{"id":"T781","span":{"begin":34,"end":43},"obj":"NN"},{"id":"T780","span":{"begin":24,"end":33},"obj":"NN"},{"id":"T779","span":{"begin":12,"end":23},"obj":"NN"},{"id":"T778","span":{"begin":9,"end":11},"obj":"CC"},{"id":"T777","span":{"begin":0,"end":8},"obj":"NNP"}],"relations":[{"id":"R365","pred":"cc","subj":"T778","obj":"T777"},{"id":"R367","pred":"amod","subj":"T780","obj":"T781"},{"id":"R368","pred":"compound","subj":"T781","obj":"T782"},{"id":"R370","pred":"nummod","subj":"T783","obj":"T782"},{"id":"R371","pred":"punct","subj":"T784","obj":"T782"},{"id":"R372","pred":"appos","subj":"T785","obj":"T782"},{"id":"R373","pred":"punct","subj":"T786","obj":"T782"},{"id":"R374","pred":"auxpass","subj":"T787","obj":"T789"},{"id":"R375","pred":"advmod","subj":"T788","obj":"T789"},{"id":"R376","pred":"ROOT","subj":"T789","obj":"T789"},{"id":"R377","pred":"prep","subj":"T790","obj":"T789"},{"id":"R378","pred":"pobj","subj":"T791","obj":"T790"},{"id":"R379","pred":"prep","subj":"T792","obj":"T789"},{"id":"R380","pred":"pobj","subj":"T793","obj":"T792"},{"id":"R381","pred":"prep","subj":"T794","obj":"T793"},{"id":"R382","pred":"amod","subj":"T795","obj":"T796"},{"id":"R383","pred":"pobj","subj":"T796","obj":"T794"},{"id":"R384","pred":"cc","subj":"T797","obj":"T789"},{"id":"R385","pred":"auxpass","subj":"T798","obj":"T799"},{"id":"R386","pred":"conj","subj":"T799","obj":"T789"},{"id":"R387","pred":"prep","subj":"T800","obj":"T799"},{"id":"R388","pred":"det","subj":"T801","obj":"T802"},{"id":"R389","pred":"pobj","subj":"T802","obj":"T800"},{"id":"R390","pred":"prep","subj":"T803","obj":"T802"},{"id":"R391","pred":"amod","subj":"T804","obj":"T805"},{"id":"R392","pred":"pobj","subj":"T805","obj":"T803"},{"id":"R393","pred":"punct","subj":"T806","obj":"T802"},{"id":"R394","pred":"compound","subj":"T807","obj":"T808"},{"id":"R395","pred":"conj","subj":"T808","obj":"T802"},{"id":"R396","pred":"punct","subj":"T809","obj":"T808"},{"id":"R397","pred":"cc","subj":"T810","obj":"T808"},{"id":"R398","pred":"conj","subj":"T811","obj":"T808"},{"id":"R399","pred":"prep","subj":"T812","obj":"T811"},{"id":"R400","pred":"compound","subj":"T813","obj":"T814"},{"id":"R401","pred":"pobj","subj":"T814","obj":"T812"},{"id":"R402","pred":"punct","subj":"T815","obj":"T789"}],"text":"SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammatory stimuli and is linked to the modulation of innate immunity, macrophage survival, and inhibition of plasminogen activators."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T267","span":{"begin":160,"end":162},"obj":"IN"},{"id":"T266","span":{"begin":149,"end":159},"obj":"NN"},{"id":"T265","span":{"begin":145,"end":148},"obj":"DT"},{"id":"T264","span":{"begin":142,"end":144},"obj":"TO"},{"id":"T263","span":{"begin":135,"end":141},"obj":"VB"},{"id":"T262","span":{"begin":132,"end":134},"obj":"VB"},{"id":"T261","span":{"begin":128,"end":131},"obj":"CC"},{"id":"T260","span":{"begin":120,"end":127},"obj":"NN"},{"id":"T259","span":{"begin":107,"end":119},"obj":"JJ"},{"id":"T258","span":{"begin":104,"end":106},"obj":"TO"},{"id":"T257","span":{"begin":95,"end":103},"obj":"NN"},{"id":"T256","span":{"begin":92,"end":94},"obj":"IN"},{"id":"T255","span":{"begin":80,"end":91},"obj":"NN"},{"id":"T254","span":{"begin":77,"end":79},"obj":"IN"},{"id":"T253","span":{"begin":69,"end":76},"obj":"VB"},{"id":"T252","span":{"begin":62,"end":68},"obj":"RB"},{"id":"T251","span":{"begin":59,"end":61},"obj":"VB"},{"id":"T250","span":{"begin":57,"end":58},"obj":"-RRB-"},{"id":"T249","span":{"begin":52,"end":57},"obj":"NN"},{"id":"T248","span":{"begin":51,"end":52},"obj":"-LRB-"},{"id":"T247","span":{"begin":49,"end":50},"obj":"CD"},{"id":"T246","span":{"begin":44,"end":48},"obj":"NN"},{"id":"T245","span":{"begin":34,"end":43},"obj":"NN"},{"id":"T244","span":{"begin":24,"end":33},"obj":"NN"},{"id":"T243","span":{"begin":12,"end":23},"obj":"NN"},{"id":"T242","span":{"begin":9,"end":11},"obj":"CC"},{"id":"T241","span":{"begin":0,"end":8},"obj":"NN"},{"id":"T278","span":{"begin":231,"end":241},"obj":"NN"},{"id":"T277","span":{"begin":219,"end":230},"obj":"NN"},{"id":"T276","span":{"begin":216,"end":218},"obj":"IN"},{"id":"T275","span":{"begin":205,"end":215},"obj":"NN"},{"id":"T274","span":{"begin":201,"end":204},"obj":"CC"},{"id":"T273","span":{"begin":199,"end":200},"obj":"-COMMA-"},{"id":"T272","span":{"begin":191,"end":199},"obj":"NN"},{"id":"T271","span":{"begin":180,"end":190},"obj":"NN"},{"id":"T270","span":{"begin":178,"end":179},"obj":"-COMMA-"},{"id":"T269","span":{"begin":170,"end":178},"obj":"NN"},{"id":"T268","span":{"begin":163,"end":169},"obj":"JJ"}],"relations":[{"id":"R49","pred":"arg1Of","subj":"T241","obj":"T242"},{"id":"R50","pred":"arg2Of","subj":"T243","obj":"T242"},{"id":"R51","pred":"arg1Of","subj":"T246","obj":"T241"},{"id":"R52","pred":"arg1Of","subj":"T246","obj":"T243"},{"id":"R53","pred":"arg1Of","subj":"T246","obj":"T244"},{"id":"R54","pred":"arg1Of","subj":"T246","obj":"T245"},{"id":"R55","pred":"arg1Of","subj":"T246","obj":"T247"},{"id":"R56","pred":"arg1Of","subj":"T246","obj":"T248"},{"id":"R57","pred":"arg1Of","subj":"T246","obj":"T251"},{"id":"R58","pred":"arg2Of","subj":"T246","obj":"T253"},{"id":"R59","pred":"arg1Of","subj":"T246","obj":"T262"},{"id":"R60","pred":"arg2Of","subj":"T246","obj":"T263"},{"id":"R61","pred":"arg2Of","subj":"T249","obj":"T248"},{"id":"R62","pred":"arg3Of","subj":"T250","obj":"T248"},{"id":"R63","pred":"arg2Of","subj":"T253","obj":"T251"},{"id":"R64","pred":"arg1Of","subj":"T253","obj":"T252"},{"id":"R65","pred":"arg1Of","subj":"T253","obj":"T254"},{"id":"R66","pred":"arg1Of","subj":"T253","obj":"T256"},{"id":"R67","pred":"arg1Of","subj":"T253","obj":"T261"},{"id":"R68","pred":"arg2Of","subj":"T255","obj":"T254"},{"id":"R69","pred":"arg2Of","subj":"T257","obj":"T256"},{"id":"R70","pred":"arg1Of","subj":"T257","obj":"T258"},{"id":"R71","pred":"arg2Of","subj":"T260","obj":"T258"},{"id":"R72","pred":"arg1Of","subj":"T260","obj":"T259"},{"id":"R73","pred":"arg2Of","subj":"T263","obj":"T261"},{"id":"R74","pred":"arg2Of","subj":"T263","obj":"T262"},{"id":"R75","pred":"arg1Of","subj":"T263","obj":"T264"},{"id":"R76","pred":"arg2Of","subj":"T266","obj":"T264"},{"id":"R77","pred":"arg1Of","subj":"T266","obj":"T265"},{"id":"R78","pred":"arg1Of","subj":"T266","obj":"T267"},{"id":"R79","pred":"arg1Of","subj":"T269","obj":"T268"},{"id":"R80","pred":"arg1Of","subj":"T269","obj":"T270"},{"id":"R81","pred":"arg1Of","subj":"T270","obj":"T274"},{"id":"R82","pred":"arg2Of","subj":"T272","obj":"T270"},{"id":"R83","pred":"arg1Of","subj":"T272","obj":"T271"},{"id":"R84","pred":"arg2Of","subj":"T274","obj":"T267"},{"id":"R85","pred":"arg1Of","subj":"T274","obj":"T273"},{"id":"R86","pred":"arg2Of","subj":"T275","obj":"T274"},{"id":"R87","pred":"arg1Of","subj":"T275","obj":"T276"},{"id":"R88","pred":"arg2Of","subj":"T278","obj":"T276"},{"id":"R89","pred":"arg1Of","subj":"T278","obj":"T277"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammatory stimuli and is linked to the modulation of innate immunity, macrophage survival, and inhibition of plasminogen activators."}

    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T159","span":{"begin":0,"end":8},"obj":"Protein"},{"id":"T160","span":{"begin":12,"end":50},"obj":"Protein"},{"id":"T161","span":{"begin":52,"end":57},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammatory stimuli and is linked to the modulation of innate immunity, macrophage survival, and inhibition of plasminogen activators."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T530","span":{"begin":0,"end":8},"obj":"http://www.uniprot.org/uniprot/P05120"},{"id":"T537","span":{"begin":49,"end":55},"obj":"http://www.uniprot.org/uniprot/P05120"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammatory stimuli and is linked to the modulation of innate immunity, macrophage survival, and inhibition of plasminogen activators."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T183","span":{"begin":205,"end":241},"obj":"http://purl.obolibrary.org/obo/GO_0010757"},{"id":"T182","span":{"begin":163,"end":178},"obj":"http://purl.obolibrary.org/obo/GO_0045087"},{"id":"T180","span":{"begin":95,"end":119},"obj":"http://purl.obolibrary.org/obo/GO_0006954"},{"id":"T179","span":{"begin":219,"end":241},"obj":"http://purl.obolibrary.org/obo/GO_0031639"},{"id":"T178","span":{"begin":12,"end":33},"obj":"http://purl.obolibrary.org/obo/GO_0031639"}],"text":"SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammatory stimuli and is linked to the modulation of innate immunity, macrophage survival, and inhibition of plasminogen activators."}

    sentences

    {"project":"sentences","denotations":[{"id":"T100","span":{"begin":0,"end":242},"obj":"Sentence"},{"id":"T4","span":{"begin":0,"end":242},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammatory stimuli and is linked to the modulation of innate immunity, macrophage survival, and inhibition of plasminogen activators."}

    simple1

    {"project":"simple1","denotations":[{"id":"T212","span":{"begin":0,"end":8},"obj":"Protein"},{"id":"T213","span":{"begin":12,"end":50},"obj":"Protein"},{"id":"T214","span":{"begin":52,"end":57},"obj":"Protein"}],"text":"SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammatory stimuli and is linked to the modulation of innate immunity, macrophage survival, and inhibition of plasminogen activators."}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T512","span":{"begin":69,"end":76},"obj":"Positive_regulation"},{"id":"T493","span":{"begin":0,"end":8},"obj":"Protein"},{"id":"T494","span":{"begin":12,"end":50},"obj":"Protein"},{"id":"T495","span":{"begin":52,"end":57},"obj":"Protein"}],"relations":[{"id":"R677","pred":"themeOf","subj":"T493","obj":"T512"},{"id":"R678","pred":"themeOf","subj":"T494","obj":"T512"},{"id":"R679","pred":"themeOf","subj":"T495","obj":"T512"}],"text":"SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammatory stimuli and is linked to the modulation of innate immunity, macrophage survival, and inhibition of plasminogen activators."}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T603","span":{"begin":0,"end":8},"obj":"Protein"},{"id":"T604","span":{"begin":12,"end":50},"obj":"Protein"},{"id":"T605","span":{"begin":52,"end":57},"obj":"Protein"},{"id":"T622","span":{"begin":69,"end":76},"obj":"Positive_regulation"}],"relations":[{"id":"R717","pred":"themeOf","subj":"T604","obj":"T622"}],"text":"SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammatory stimuli and is linked to the modulation of innate immunity, macrophage survival, and inhibition of plasminogen activators."}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T569","span":{"begin":0,"end":8},"obj":"Protein"},{"id":"T570","span":{"begin":12,"end":50},"obj":"Protein"},{"id":"T571","span":{"begin":52,"end":57},"obj":"Protein"},{"id":"T589","span":{"begin":69,"end":76},"obj":"Positive_regulation"}],"relations":[{"id":"R684","pred":"themeOf","subj":"T570","obj":"T589"},{"id":"R683","pred":"themeOf","subj":"T569","obj":"T589"}],"text":"SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammatory stimuli and is linked to the modulation of innate immunity, macrophage survival, and inhibition of plasminogen activators."}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T705","span":{"begin":180,"end":190},"obj":"Entity"},{"id":"T723","span":{"begin":80,"end":91},"obj":"Entity"},{"id":"T733","span":{"begin":216,"end":241},"obj":"Entity"},{"id":"T739","span":{"begin":52,"end":57},"obj":"Protein"},{"id":"T740","span":{"begin":0,"end":58},"obj":"Protein"},{"id":"T744","span":{"begin":12,"end":58},"obj":"Protein"},{"id":"T745","span":{"begin":219,"end":230},"obj":"Protein"}],"text":"SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammatory stimuli and is linked to the modulation of innate immunity, macrophage survival, and inhibition of plasminogen activators."}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T644","span":{"begin":205,"end":215},"obj":"Negative_regulation"},{"id":"T643","span":{"begin":69,"end":76},"obj":"Positive_regulation"},{"id":"T642","span":{"begin":69,"end":76},"obj":"Positive_regulation"},{"id":"T641","span":{"begin":219,"end":241},"obj":"Protein"},{"id":"T640","span":{"begin":52,"end":57},"obj":"Protein"},{"id":"T639","span":{"begin":12,"end":50},"obj":"Protein"}],"relations":[{"id":"R322","pred":"themeOf","subj":"T640","obj":"T643"},{"id":"R323","pred":"themeOf","subj":"T641","obj":"T644"},{"id":"R706","pred":"themeOf","subj":"T639","obj":"T642"}],"text":"SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammatory stimuli and is linked to the modulation of innate immunity, macrophage survival, and inhibition of plasminogen activators."}

    testone

    {"project":"testone","denotations":[{"id":"T24","span":{"begin":52,"end":57},"obj":"Protein"},{"id":"T23","span":{"begin":12,"end":50},"obj":"Protein"},{"id":"T22","span":{"begin":0,"end":8},"obj":"Protein"}],"relations":[{"id":"R1","pred":"equivalentTo","subj":"T24","obj":"T23"}],"text":"SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammatory stimuli and is linked to the modulation of innate immunity, macrophage survival, and inhibition of plasminogen activators."}

    test3

    {"project":"test3","denotations":[{"id":"T73","span":{"begin":69,"end":76},"obj":"Positive_regulation"},{"id":"T72","span":{"begin":52,"end":57},"obj":"Protein"},{"id":"T71","span":{"begin":12,"end":50},"obj":"Protein"},{"id":"T70","span":{"begin":0,"end":8},"obj":"Protein"},{"id":"T53","span":{"begin":52,"end":57},"obj":"Protein"},{"id":"T52","span":{"begin":12,"end":50},"obj":"Protein"},{"id":"T51","span":{"begin":0,"end":8},"obj":"Protein"}],"relations":[{"id":"R15","pred":"themeOf","subj":"T71","obj":"T73"},{"id":"R16","pred":"equivalentTo","subj":"T72","obj":"T71"}],"text":"SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammatory stimuli and is linked to the modulation of innate immunity, macrophage survival, and inhibition of plasminogen activators."}