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PMC:3589482 / 156-398 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T815 241-242 . denotes .
T814 231-241 NNS denotes activators
T813 219-230 NN denotes plasminogen
T812 216-218 IN denotes of
T811 205-215 NN denotes inhibition
T810 201-204 CC denotes and
T809 199-200 , denotes ,
T808 191-199 NN denotes survival
T807 180-190 NN denotes macrophage
T806 178-179 , denotes ,
T805 170-178 NN denotes immunity
T804 163-169 NN denotes innate
T803 160-162 IN denotes of
T802 149-159 NN denotes modulation
T801 145-148 DT denotes the
T800 142-144 TO denotes to
T799 135-141 VBN denotes linked
T798 132-134 VBZ denotes is
T797 128-131 CC denotes and
T796 120-127 NNS denotes stimuli
T795 107-119 JJ denotes inflammatory
T794 104-106 TO denotes to
T793 95-103 NN denotes response
T792 92-94 IN denotes in
T791 80-91 NNS denotes macrophages
T790 77-79 IN denotes in
T789 69-76 VBN denotes induced
T788 62-68 RB denotes highly
T787 59-61 VBZ denotes is
T786 57-58 -RRB- denotes )
T785 52-57 NN denotes PAI-2
T784 51-52 -LRB- denotes (
T783 49-50 CD denotes 2
T782 44-48 NN denotes type
T781 34-43 NN denotes inhibitor
T780 24-33 NN denotes activator
T779 12-23 NN denotes plasminogen
T778 9-11 CC denotes or
T777 0-8 NNP denotes SerpinB2
R365 T778 T777 cc or,SerpinB2
R367 T780 T781 amod activator,inhibitor
R368 T781 T782 compound inhibitor,type
R370 T783 T782 nummod 2,type
R371 T784 T782 punct (,type
R372 T785 T782 appos PAI-2,type
R373 T786 T782 punct ),type
R374 T787 T789 auxpass is,induced
R375 T788 T789 advmod highly,induced
R376 T789 T789 ROOT induced,induced
R377 T790 T789 prep in,induced
R378 T791 T790 pobj macrophages,in
R379 T792 T789 prep in,induced
R380 T793 T792 pobj response,in
R381 T794 T793 prep to,response
R382 T795 T796 amod inflammatory,stimuli
R383 T796 T794 pobj stimuli,to
R384 T797 T789 cc and,induced
R385 T798 T799 auxpass is,linked
R386 T799 T789 conj linked,induced
R387 T800 T799 prep to,linked
R388 T801 T802 det the,modulation
R389 T802 T800 pobj modulation,to
R390 T803 T802 prep of,modulation
R391 T804 T805 amod innate,immunity
R392 T805 T803 pobj immunity,of
R393 T806 T802 punct ",",modulation
R394 T807 T808 compound macrophage,survival
R395 T808 T802 conj survival,modulation
R396 T809 T808 punct ",",survival
R397 T810 T808 cc and,survival
R398 T811 T808 conj inhibition,survival
R399 T812 T811 prep of,inhibition
R400 T813 T814 compound plasminogen,activators
R401 T814 T812 pobj activators,of
R402 T815 T789 punct .,induced

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T267 160-162 IN denotes of
T266 149-159 NN denotes modulation
T265 145-148 DT denotes the
T264 142-144 TO denotes to
T263 135-141 VB denotes linked
T262 132-134 VB denotes is
T261 128-131 CC denotes and
T260 120-127 NN denotes stimuli
T259 107-119 JJ denotes inflammatory
T258 104-106 TO denotes to
T257 95-103 NN denotes response
T256 92-94 IN denotes in
T255 80-91 NN denotes macrophages
T254 77-79 IN denotes in
T253 69-76 VB denotes induced
T252 62-68 RB denotes highly
T251 59-61 VB denotes is
T250 57-58 -RRB- denotes )
T249 52-57 NN denotes PAI-2
T248 51-52 -LRB- denotes (
T247 49-50 CD denotes 2
T246 44-48 NN denotes type
T245 34-43 NN denotes inhibitor
T244 24-33 NN denotes activator
T243 12-23 NN denotes plasminogen
T242 9-11 CC denotes or
T241 0-8 NN denotes SerpinB2
T278 231-241 NN denotes activators
T277 219-230 NN denotes plasminogen
T276 216-218 IN denotes of
T275 205-215 NN denotes inhibition
T274 201-204 CC denotes and
T273 199-200 -COMMA- denotes ,
T272 191-199 NN denotes survival
T271 180-190 NN denotes macrophage
T270 178-179 -COMMA- denotes ,
T269 170-178 NN denotes immunity
T268 163-169 JJ denotes innate
R49 T241 T242 arg1Of SerpinB2,or
R50 T243 T242 arg2Of plasminogen,or
R51 T246 T241 arg1Of type,SerpinB2
R52 T246 T243 arg1Of type,plasminogen
R53 T246 T244 arg1Of type,activator
R54 T246 T245 arg1Of type,inhibitor
R55 T246 T247 arg1Of type,2
R56 T246 T248 arg1Of type,(
R57 T246 T251 arg1Of type,is
R58 T246 T253 arg2Of type,induced
R59 T246 T262 arg1Of type,is
R60 T246 T263 arg2Of type,linked
R61 T249 T248 arg2Of PAI-2,(
R62 T250 T248 arg3Of ),(
R63 T253 T251 arg2Of induced,is
R64 T253 T252 arg1Of induced,highly
R65 T253 T254 arg1Of induced,in
R66 T253 T256 arg1Of induced,in
R67 T253 T261 arg1Of induced,and
R68 T255 T254 arg2Of macrophages,in
R69 T257 T256 arg2Of response,in
R70 T257 T258 arg1Of response,to
R71 T260 T258 arg2Of stimuli,to
R72 T260 T259 arg1Of stimuli,inflammatory
R73 T263 T261 arg2Of linked,and
R74 T263 T262 arg2Of linked,is
R75 T263 T264 arg1Of linked,to
R76 T266 T264 arg2Of modulation,to
R77 T266 T265 arg1Of modulation,the
R78 T266 T267 arg1Of modulation,of
R79 T269 T268 arg1Of immunity,innate
R80 T269 T270 arg1Of immunity,","
R81 T270 T274 arg1Of ",",and
R82 T272 T270 arg2Of survival,","
R83 T272 T271 arg1Of survival,macrophage
R84 T274 T267 arg2Of and,of
R85 T274 T273 arg1Of and,","
R86 T275 T274 arg2Of inhibition,and
R87 T275 T276 arg1Of inhibition,of
R88 T278 T276 arg2Of activators,of
R89 T278 T277 arg1Of activators,plasminogen

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T159 0-8 Protein denotes SerpinB2
T160 12-50 Protein denotes plasminogen activator inhibitor type 2
T161 52-57 Protein denotes PAI-2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T530 0-8 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T537 49-55 http://www.uniprot.org/uniprot/P05120 denotes 2 (PAI

GO-BP

Id Subject Object Predicate Lexical cue
T183 205-241 http://purl.obolibrary.org/obo/GO_0010757 denotes inhibition of plasminogen activators
T182 163-178 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immunity
T180 95-119 http://purl.obolibrary.org/obo/GO_0006954 denotes response to inflammatory
T179 219-241 http://purl.obolibrary.org/obo/GO_0031639 denotes plasminogen activators
T178 12-33 http://purl.obolibrary.org/obo/GO_0031639 denotes plasminogen activator

sentences

Id Subject Object Predicate Lexical cue
T100 0-242 Sentence denotes SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammatory stimuli and is linked to the modulation of innate immunity, macrophage survival, and inhibition of plasminogen activators.
T4 0-242 Sentence denotes SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammatory stimuli and is linked to the modulation of innate immunity, macrophage survival, and inhibition of plasminogen activators.

simple1

Id Subject Object Predicate Lexical cue
T212 0-8 Protein denotes SerpinB2
T213 12-50 Protein denotes plasminogen activator inhibitor type 2
T214 52-57 Protein denotes PAI-2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T512 69-76 Positive_regulation denotes induced
T493 0-8 Protein denotes SerpinB2
T494 12-50 Protein denotes plasminogen activator inhibitor type 2
T495 52-57 Protein denotes PAI-2
R677 T493 T512 themeOf SerpinB2,induced
R678 T494 T512 themeOf plasminogen activator inhibitor type 2,induced
R679 T495 T512 themeOf PAI-2,induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T603 0-8 Protein denotes SerpinB2
T604 12-50 Protein denotes plasminogen activator inhibitor type 2
T605 52-57 Protein denotes PAI-2
T622 69-76 Positive_regulation denotes induced
R717 T604 T622 themeOf plasminogen activator inhibitor type 2,induced

DLUT931

Id Subject Object Predicate Lexical cue
T569 0-8 Protein denotes SerpinB2
T570 12-50 Protein denotes plasminogen activator inhibitor type 2
T571 52-57 Protein denotes PAI-2
T589 69-76 Positive_regulation denotes induced
R684 T570 T589 themeOf plasminogen activator inhibitor type 2,induced
R683 T569 T589 themeOf SerpinB2,induced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T705 180-190 Entity denotes macrophage
T723 80-91 Entity denotes macrophages
T733 216-241 Entity denotes of plasminogen activators
T739 52-57 Protein denotes PAI-2
T740 0-58 Protein denotes SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2)
T744 12-58 Protein denotes plasminogen activator inhibitor type 2 (PAI-2)
T745 219-230 Protein denotes plasminogen

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T644 205-215 Negative_regulation denotes inhibition
T643 69-76 Positive_regulation denotes induced
T642 69-76 Positive_regulation denotes induced
T641 219-241 Protein denotes plasminogen activators
T640 52-57 Protein denotes PAI-2
T639 12-50 Protein denotes plasminogen activator inhibitor type 2
R322 T640 T643 themeOf PAI-2,induced
R323 T641 T644 themeOf plasminogen activators,inhibition
R706 T639 T642 themeOf plasminogen activator inhibitor type 2,induced

testone

Id Subject Object Predicate Lexical cue
T24 52-57 Protein denotes PAI-2
T23 12-50 Protein denotes plasminogen activator inhibitor type 2
T22 0-8 Protein denotes SerpinB2
R1 T24 T23 equivalentTo PAI-2,plasminogen activator inhibitor type 2

test3

Id Subject Object Predicate Lexical cue
T73 69-76 Positive_regulation denotes induced
T72 52-57 Protein denotes PAI-2
T71 12-50 Protein denotes plasminogen activator inhibitor type 2
T70 0-8 Protein denotes SerpinB2
T53 52-57 Protein denotes PAI-2
T52 12-50 Protein denotes plasminogen activator inhibitor type 2
T51 0-8 Protein denotes SerpinB2
R15 T71 T73 themeOf plasminogen activator inhibitor type 2,induced
R16 T72 T71 equivalentTo PAI-2,plasminogen activator inhibitor type 2