> top > docs > PMC:3589482 > spans > 152-846 > annotations

PMC:3589482 / 152-846 JSONTXT

Annnotations TAB JSON ListView MergeView

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T856 465-473 NN denotes promoter
T855 456-464 CD denotes SerpinB2
T854 442-455 JJ denotes LPS-regulated
T853 438-441 DT denotes the
T852 434-437 VB denotes map
T851 431-433 TO denotes To
T850 429-430 . denotes .
T849 418-429 NNS denotes macrophages
T848 411-417 JJ denotes murine
T847 408-410 IN denotes in
T846 404-407 NNS denotes hrs
T845 401-403 CD denotes 24
T844 398-400 IN denotes of
T843 391-397 NN denotes period
T842 389-390 DT denotes a
T841 384-388 IN denotes over
T840 374-383 JJ denotes 1000-fold
T839 373-374 CD denotes ∼
T838 370-372 IN denotes by
T837 368-369 -RRB- denotes )
T836 364-368 CD denotes TLR4
T835 363-364 -LRB- denotes (
T834 361-362 CD denotes 4
T833 352-360 NN denotes receptor
T832 342-351 JJ denotes toll-like
T831 338-341 DT denotes the
T830 334-337 IN denotes via
T829 323-333 NN denotes expression
T828 314-322 NNP denotes SerpinB2
T827 307-313 VB denotes induce
T826 303-306 MD denotes can
T825 301-302 , denotes ,
T824 292-301 NN denotes endotoxin
T823 282-291 JJ denotes bacterial
T822 275-281 JJ denotes potent
T821 273-274 DT denotes a
T820 271-272 , denotes ,
T819 270-271 -RRB- denotes )
T818 267-270 NNP denotes LPS
T817 266-267 -LRB- denotes (
T816 247-265 NNP denotes Lipopolysaccharide
T815 245-246 . denotes .
T814 235-245 NNS denotes activators
T813 223-234 NN denotes plasminogen
T812 220-222 IN denotes of
T811 209-219 NN denotes inhibition
T810 205-208 CC denotes and
T809 203-204 , denotes ,
T808 195-203 NN denotes survival
T807 184-194 NN denotes macrophage
T806 182-183 , denotes ,
T805 174-182 NN denotes immunity
T804 167-173 NN denotes innate
T803 164-166 IN denotes of
T802 153-163 NN denotes modulation
T801 149-152 DT denotes the
T800 146-148 TO denotes to
T799 139-145 VBN denotes linked
T798 136-138 VBZ denotes is
T797 132-135 CC denotes and
T796 124-131 NNS denotes stimuli
T795 111-123 JJ denotes inflammatory
T794 108-110 TO denotes to
T793 99-107 NN denotes response
T792 96-98 IN denotes in
T791 84-95 NNS denotes macrophages
T790 81-83 IN denotes in
T789 73-80 VBN denotes induced
T788 66-72 RB denotes highly
T787 63-65 VBZ denotes is
T786 61-62 -RRB- denotes )
T785 56-61 NN denotes PAI-2
T784 55-56 -LRB- denotes (
T783 53-54 CD denotes 2
T782 48-52 NN denotes type
T781 38-47 NN denotes inhibitor
T780 28-37 NN denotes activator
T779 16-27 NN denotes plasminogen
T778 13-15 CC denotes or
T777 4-12 NNP denotes SerpinB2
T897 688-694 NN denotes murine
T896 684-687 DT denotes the
T895 681-683 IN denotes of
T894 672-680 NN denotes sequence
T893 668-671 NNP denotes DNA
T892 664-667 DT denotes the
T891 655-663 VBD denotes compared
T890 652-654 PRP denotes we
T889 650-651 , denotes ,
T888 642-650 NN denotes addition
T887 639-641 IN denotes In
T886 637-638 . denotes .
T885 626-637 NNS denotes macrophages
T884 619-625 JJ denotes murine
T883 614-618 IN denotes into
T882 606-613 NNS denotes mutants
T881 597-605 NN denotes deletion
T880 589-596 JJ denotes several
T879 585-588 CC denotes and
T878 580-584 NN denotes gene
T877 571-579 NNP denotes SerpinB2
T876 564-570 NN denotes murine
T875 560-563 DT denotes the
T874 557-559 IN denotes of
T873 550-556 NN denotes region
T872 541-549 VBG denotes flanking
T871 540-541 : denotes -
T870 539-540 '' denotes '
T869 538-539 CD denotes 5
T868 535-537 NN denotes kb
T867 533-534 CD denotes 5
T866 532-533 NN denotes ∼
T865 528-531 DT denotes the
T864 525-527 IN denotes by
T863 518-524 VBN denotes driven
T862 507-517 NNS denotes constructs
T861 498-506 NN denotes reporter
T860 486-497 VBD denotes transfected
T859 483-485 PRP denotes we
T858 481-482 , denotes ,
T857 474-481 NNS denotes regions
R365 T778 T777 cc or,SerpinB2
R367 T780 T781 amod activator,inhibitor
R368 T781 T782 compound inhibitor,type
R370 T783 T782 nummod 2,type
R371 T784 T782 punct (,type
R372 T785 T782 appos PAI-2,type
R373 T786 T782 punct ),type
R374 T787 T789 auxpass is,induced
R375 T788 T789 advmod highly,induced
R376 T789 T789 ROOT induced,induced
R377 T790 T789 prep in,induced
R378 T791 T790 pobj macrophages,in
R379 T792 T789 prep in,induced
R380 T793 T792 pobj response,in
R381 T794 T793 prep to,response
R382 T795 T796 amod inflammatory,stimuli
R383 T796 T794 pobj stimuli,to
R384 T797 T789 cc and,induced
R385 T798 T799 auxpass is,linked
R386 T799 T789 conj linked,induced
R387 T800 T799 prep to,linked
R388 T801 T802 det the,modulation
R389 T802 T800 pobj modulation,to
R390 T803 T802 prep of,modulation
R391 T804 T805 amod innate,immunity
R392 T805 T803 pobj immunity,of
R393 T806 T802 punct ",",modulation
R394 T807 T808 compound macrophage,survival
R395 T808 T802 conj survival,modulation
R396 T809 T808 punct ",",survival
R397 T810 T808 cc and,survival
R398 T811 T808 conj inhibition,survival
R399 T812 T811 prep of,inhibition
R400 T813 T814 compound plasminogen,activators
R401 T814 T812 pobj activators,of
R402 T815 T789 punct .,induced
R403 T816 T827 npadvmod Lipopolysaccharide,induce
R404 T817 T818 punct (,LPS
R405 T818 T816 appos LPS,Lipopolysaccharide
R406 T819 T816 punct ),Lipopolysaccharide
R407 T820 T816 punct ",",Lipopolysaccharide
R408 T821 T824 det a,endotoxin
R409 T822 T824 amod potent,endotoxin
R410 T823 T824 amod bacterial,endotoxin
R411 T824 T816 appos endotoxin,Lipopolysaccharide
R412 T825 T827 punct ",",induce
R413 T826 T827 aux can,induce
R414 T827 T827 ROOT induce,induce
R415 T828 T829 compound SerpinB2,expression
R416 T829 T827 dobj expression,induce
R417 T830 T827 prep via,induce
R418 T831 T833 det the,receptor
R419 T832 T833 amod toll-like,receptor
R420 T833 T830 pobj receptor,via
R421 T834 T833 nummod 4,receptor
R422 T835 T833 punct (,receptor
R423 T836 T833 appos TLR4,receptor
R424 T837 T833 punct ),receptor
R425 T838 T827 prep by,induce
R426 T839 T838 pobj ∼,by
R427 T840 T827 advcl 1000-fold,induce
R428 T841 T840 prep over,1000-fold
R429 T842 T843 det a,period
R430 T843 T841 pobj period,over
R431 T844 T843 prep of,period
R432 T845 T846 nummod 24,hrs
R433 T846 T844 pobj hrs,of
R434 T847 T846 prep in,hrs
R435 T848 T849 amod murine,macrophages
R436 T849 T847 pobj macrophages,in
R437 T850 T827 punct .,induce
R438 T851 T852 aux To,map
R439 T852 T860 advcl map,transfected
R440 T853 T857 det the,regions
R441 T854 T857 amod LPS-regulated,regions
R442 T855 T857 nummod SerpinB2,regions
R443 T856 T857 compound promoter,regions
R444 T857 T852 dobj regions,map
R445 T858 T860 punct ",",transfected
R446 T859 T860 nsubj we,transfected
R447 T860 T860 ROOT transfected,transfected
R448 T861 T862 compound reporter,constructs
R449 T862 T860 dobj constructs,transfected
R450 T863 T862 acl driven,constructs
R451 T864 T863 agent by,driven
R452 T865 T873 det the,region
R453 T866 T868 nmod ∼,kb
R454 T867 T866 nummod 5,∼
R455 T868 T872 meta kb,flanking
R456 T869 T868 nummod 5,kb
R457 T870 T869 punct ',5
R458 T871 T872 punct -,flanking
R459 T872 T873 amod flanking,region
R460 T873 T864 pobj region,by
R461 T874 T873 prep of,region
R462 T875 T878 det the,gene
R463 T876 T878 compound murine,gene
R464 T877 T878 compound SerpinB2,gene
R465 T878 T874 pobj gene,of
R466 T879 T878 cc and,gene
R467 T880 T882 amod several,mutants
R468 T881 T882 compound deletion,mutants
R469 T882 T878 conj mutants,gene
R470 T883 T863 prep into,driven
R471 T884 T885 amod murine,macrophages
R472 T885 T883 pobj macrophages,into
R473 T886 T860 punct .,transfected
R474 T887 T891 prep In,compared
R475 T888 T887 pobj addition,In
R476 T889 T891 punct ",",compared
R477 T890 T891 nsubj we,compared
R478 T891 T891 ROOT compared,compared
R479 T892 T894 det the,sequence
R480 T893 T894 compound DNA,sequence
R481 T894 T891 dobj sequence,compared
R482 T895 T894 prep of,sequence

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T267 164-166 IN denotes of
T266 153-163 NN denotes modulation
T265 149-152 DT denotes the
T264 146-148 TO denotes to
T263 139-145 VB denotes linked
T262 136-138 VB denotes is
T261 132-135 CC denotes and
T260 124-131 NN denotes stimuli
T259 111-123 JJ denotes inflammatory
T258 108-110 TO denotes to
T257 99-107 NN denotes response
T256 96-98 IN denotes in
T255 84-95 NN denotes macrophages
T254 81-83 IN denotes in
T253 73-80 VB denotes induced
T252 66-72 RB denotes highly
T251 63-65 VB denotes is
T250 61-62 -RRB- denotes )
T249 56-61 NN denotes PAI-2
T248 55-56 -LRB- denotes (
T247 53-54 CD denotes 2
T246 48-52 NN denotes type
T245 38-47 NN denotes inhibitor
T244 28-37 NN denotes activator
T243 16-27 NN denotes plasminogen
T242 13-15 CC denotes or
T241 4-12 NN denotes SerpinB2
T307 401-403 CD denotes 24
T306 398-400 IN denotes of
T305 391-397 NN denotes period
T304 389-390 DT denotes a
T303 384-388 IN denotes over
T302 373-383 RB denotes ∼1000-fold
T301 370-372 IN denotes by
T300 368-369 -RRB- denotes )
T299 364-368 NN denotes TLR4
T298 363-364 -LRB- denotes (
T297 361-362 CD denotes 4
T296 352-360 NN denotes receptor
T295 342-351 JJ denotes toll-like
T294 338-341 DT denotes the
T293 334-337 IN denotes via
T292 323-333 NN denotes expression
T291 314-322 NN denotes SerpinB2
T290 307-313 VB denotes induce
T289 303-306 MD denotes can
T288 301-302 -COMMA- denotes ,
T287 292-301 NN denotes endotoxin
T286 282-291 JJ denotes bacterial
T285 275-281 JJ denotes potent
T284 273-274 DT denotes a
T283 271-272 -COMMA- denotes ,
T282 270-271 -RRB- denotes )
T281 267-270 NN denotes LPS
T280 266-267 -LRB- denotes (
T279 247-265 NN denotes Lipopolysaccharide
T278 235-245 NN denotes activators
T277 223-234 NN denotes plasminogen
T276 220-222 IN denotes of
T275 209-219 NN denotes inhibition
T274 205-208 CC denotes and
T273 203-204 -COMMA- denotes ,
T272 195-203 NN denotes survival
T271 184-194 NN denotes macrophage
T270 182-183 -COMMA- denotes ,
T269 174-182 NN denotes immunity
T268 167-173 JJ denotes innate
T347 655-663 VB denotes compared
T346 652-654 PRP denotes we
T345 650-651 -COMMA- denotes ,
T344 642-650 NN denotes addition
T343 639-641 IN denotes In
T342 626-637 NN denotes macrophages
T341 619-625 JJ denotes murine
T340 614-618 IN denotes into
T339 606-613 NN denotes mutants
T338 597-605 NN denotes deletion
T337 589-596 JJ denotes several
T336 585-588 CC denotes and
T335 580-584 NN denotes gene
T334 571-579 NN denotes SerpinB2
T333 564-570 JJ denotes murine
T332 560-563 DT denotes the
T331 557-559 IN denotes of
T330 550-556 NN denotes region
T329 538-549 JJ denotes 5'-flanking
T328 535-537 NN denotes kb
T327 532-534 CD denotes ∼5
T326 528-531 DT denotes the
T325 525-527 IN denotes by
T324 518-524 VB denotes driven
T323 507-517 NN denotes constructs
T322 498-506 NN denotes reporter
T321 486-497 VB denotes transfected
T320 483-485 PRP denotes we
T319 481-482 -COMMA- denotes ,
T318 474-481 NN denotes regions
T317 465-473 NN denotes promoter
T316 456-464 NN denotes SerpinB2
T315 442-455 JJ denotes LPS-regulated
T314 438-441 DT denotes the
T313 434-437 VB denotes map
T312 431-433 TO denotes To
T311 418-429 NN denotes macrophages
T310 411-417 JJ denotes murine
T309 408-410 IN denotes in
T308 404-407 NN denotes hrs
T353 688-694 JJ denotes murine
T352 684-687 DT denotes the
T351 681-683 IN denotes of
T350 672-680 NN denotes sequence
T349 668-671 NN denotes DNA
T348 664-667 DT denotes the
R49 T241 T242 arg1Of SerpinB2,or
R50 T243 T242 arg2Of plasminogen,or
R51 T246 T241 arg1Of type,SerpinB2
R52 T246 T243 arg1Of type,plasminogen
R53 T246 T244 arg1Of type,activator
R54 T246 T245 arg1Of type,inhibitor
R55 T246 T247 arg1Of type,2
R56 T246 T248 arg1Of type,(
R57 T246 T251 arg1Of type,is
R58 T246 T253 arg2Of type,induced
R59 T246 T262 arg1Of type,is
R60 T246 T263 arg2Of type,linked
R61 T249 T248 arg2Of PAI-2,(
R62 T250 T248 arg3Of ),(
R63 T253 T251 arg2Of induced,is
R64 T253 T252 arg1Of induced,highly
R65 T253 T254 arg1Of induced,in
R66 T253 T256 arg1Of induced,in
R67 T253 T261 arg1Of induced,and
R68 T255 T254 arg2Of macrophages,in
R69 T257 T256 arg2Of response,in
R70 T257 T258 arg1Of response,to
R71 T260 T258 arg2Of stimuli,to
R72 T260 T259 arg1Of stimuli,inflammatory
R73 T263 T261 arg2Of linked,and
R74 T263 T262 arg2Of linked,is
R75 T263 T264 arg1Of linked,to
R76 T266 T264 arg2Of modulation,to
R77 T266 T265 arg1Of modulation,the
R78 T266 T267 arg1Of modulation,of
R79 T269 T268 arg1Of immunity,innate
R80 T269 T270 arg1Of immunity,","
R81 T270 T274 arg1Of ",",and
R82 T272 T270 arg2Of survival,","
R83 T272 T271 arg1Of survival,macrophage
R84 T274 T267 arg2Of and,of
R85 T274 T273 arg1Of and,","
R86 T275 T274 arg2Of inhibition,and
R87 T275 T276 arg1Of inhibition,of
R88 T278 T276 arg2Of activators,of
R89 T278 T277 arg1Of activators,plasminogen
R90 T279 T280 arg1Of Lipopolysaccharide,(
R91 T279 T283 arg1Of Lipopolysaccharide,","
R92 T279 T289 arg1Of Lipopolysaccharide,can
R93 T279 T290 arg1Of Lipopolysaccharide,induce
R94 T281 T280 arg2Of LPS,(
R95 T282 T280 arg3Of ),(
R96 T287 T283 arg2Of endotoxin,","
R97 T287 T284 arg1Of endotoxin,a
R98 T287 T285 arg1Of endotoxin,potent
R99 T287 T286 arg1Of endotoxin,bacterial
R100 T290 T288 arg1Of induce,","
R101 T290 T289 arg2Of induce,can
R102 T290 T293 arg1Of induce,via
R103 T290 T301 arg1Of induce,by
R104 T290 T303 arg1Of induce,over
R105 T292 T290 arg2Of expression,induce
R106 T292 T291 arg1Of expression,SerpinB2
R107 T296 T293 arg2Of receptor,via
R108 T296 T294 arg1Of receptor,the
R109 T296 T295 arg1Of receptor,toll-like
R110 T296 T297 arg1Of receptor,4
R111 T296 T298 arg1Of receptor,(
R112 T299 T298 arg2Of TLR4,(
R113 T300 T298 arg3Of ),(
R114 T302 T301 arg2Of ∼1000-fold,by
R115 T305 T303 arg2Of period,over
R116 T305 T304 arg1Of period,a
R117 T305 T306 arg1Of period,of
R118 T305 T309 arg1Of period,in
R119 T308 T306 arg2Of hrs,of
R120 T308 T307 arg1Of hrs,24
R121 T311 T309 arg2Of macrophages,in
R122 T311 T310 arg1Of macrophages,murine
R123 T313 T312 arg1Of map,To
R124 T318 T313 arg2Of regions,map
R125 T318 T314 arg1Of regions,the
R126 T318 T315 arg1Of regions,LPS-regulated
R127 T318 T316 arg1Of regions,SerpinB2
R128 T318 T317 arg1Of regions,promoter
R129 T320 T313 arg1Of we,map
R130 T320 T321 arg1Of we,transfected
R131 T321 T312 modOf transfected,To
R132 T321 T319 arg1Of transfected,","
R133 T323 T321 arg2Of constructs,transfected
R134 T323 T322 arg1Of constructs,reporter
R135 T323 T324 arg2Of constructs,driven
R136 T330 T324 arg1Of region,driven
R137 T330 T325 arg2Of region,by
R138 T330 T326 arg1Of region,the
R139 T330 T327 arg1Of region,∼5
R140 T330 T328 arg1Of region,kb
R141 T330 T329 arg1Of region,5'-flanking
R142 T330 T331 arg1Of region,of
R143 T330 T340 arg1Of region,into
R144 T335 T332 arg1Of gene,the
R145 T335 T333 arg1Of gene,murine
R146 T335 T334 arg1Of gene,SerpinB2
R147 T335 T336 arg1Of gene,and
R148 T336 T331 arg2Of and,of
R149 T339 T336 arg2Of mutants,and
R150 T339 T337 arg1Of mutants,several
R151 T339 T338 arg1Of mutants,deletion
R152 T342 T340 arg2Of macrophages,into
R153 T342 T341 arg1Of macrophages,murine
R154 T344 T343 arg2Of addition,In
R155 T346 T347 arg1Of we,compared
R158 T350 T347 arg2Of sequence,compared
R159 T350 T348 arg1Of sequence,the
R160 T350 T349 arg1Of sequence,DNA
R161 T350 T351 arg1Of sequence,of

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T159 4-12 Protein denotes SerpinB2
T160 16-54 Protein denotes plasminogen activator inhibitor type 2
T161 56-61 Protein denotes PAI-2
T162 314-322 Protein denotes SerpinB2
T163 342-362 Protein denotes toll-like receptor 4
T164 364-368 Protein denotes TLR4
T165 456-464 Protein denotes SerpinB2
T166 571-579 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T539 364-368 http://www.uniprot.org/uniprot/O00206 denotes TLR4
T530 4-12 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T531 314-322 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T532 456-464 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T533 571-579 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T537 53-59 http://www.uniprot.org/uniprot/P05120 denotes 2 (PAI

GO-BP

Id Subject Object Predicate Lexical cue
T183 209-245 http://purl.obolibrary.org/obo/GO_0010757 denotes inhibition of plasminogen activators
T182 167-182 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immunity
T180 99-123 http://purl.obolibrary.org/obo/GO_0006954 denotes response to inflammatory
T179 223-245 http://purl.obolibrary.org/obo/GO_0031639 denotes plasminogen activators
T178 16-37 http://purl.obolibrary.org/obo/GO_0031639 denotes plasminogen activator

sentences

Id Subject Object Predicate Lexical cue
T100 4-246 Sentence denotes SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammatory stimuli and is linked to the modulation of innate immunity, macrophage survival, and inhibition of plasminogen activators.
T101 247-430 Sentence denotes Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs in murine macrophages.
T102 431-638 Sentence denotes To map the LPS-regulated SerpinB2 promoter regions, we transfected reporter constructs driven by the ∼5 kb 5'-flanking region of the murine SerpinB2 gene and several deletion mutants into murine macrophages.
T4 4-246 Sentence denotes SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammatory stimuli and is linked to the modulation of innate immunity, macrophage survival, and inhibition of plasminogen activators.
T5 247-430 Sentence denotes Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs in murine macrophages.
T6 431-638 Sentence denotes To map the LPS-regulated SerpinB2 promoter regions, we transfected reporter constructs driven by the ∼5 kb 5'-flanking region of the murine SerpinB2 gene and several deletion mutants into murine macrophages.

simple1

Id Subject Object Predicate Lexical cue
T212 4-12 Protein denotes SerpinB2
T213 16-54 Protein denotes plasminogen activator inhibitor type 2
T214 56-61 Protein denotes PAI-2
T215 314-322 Protein denotes SerpinB2
T216 342-362 Protein denotes toll-like receptor 4
T217 364-368 Protein denotes TLR4
T218 456-464 Protein denotes SerpinB2
T219 571-579 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T514 307-313 Positive_regulation denotes induce
T513 323-333 Gene_expression denotes expression
T512 73-80 Positive_regulation denotes induced
T500 456-464 Protein denotes SerpinB2
T499 571-579 Protein denotes SerpinB2
T498 364-368 Protein denotes TLR4
T493 4-12 Protein denotes SerpinB2
T494 16-54 Protein denotes plasminogen activator inhibitor type 2
T495 56-61 Protein denotes PAI-2
T496 314-322 Protein denotes SerpinB2
T497 342-362 Protein denotes toll-like receptor 4
R308 T513 T514 themeOf expression,induce
R677 T493 T512 themeOf SerpinB2,induced
R678 T494 T512 themeOf plasminogen activator inhibitor type 2,induced
R679 T495 T512 themeOf PAI-2,induced
R680 T496 T513 themeOf SerpinB2,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T603 4-12 Protein denotes SerpinB2
T604 16-54 Protein denotes plasminogen activator inhibitor type 2
T605 56-61 Protein denotes PAI-2
T606 314-322 Protein denotes SerpinB2
T607 342-362 Protein denotes toll-like receptor 4
T608 364-368 Protein denotes TLR4
T609 571-579 Protein denotes SerpinB2
T610 456-464 Protein denotes SerpinB2
T622 73-80 Positive_regulation denotes induced
T623 323-333 Gene_expression denotes expression
T624 307-313 Positive_regulation denotes induce
R717 T604 T622 themeOf plasminogen activator inhibitor type 2,induced
R718 T606 T623 themeOf SerpinB2,expression
R720 T607 T624 causeOf toll-like receptor 4,induce
R733 T623 T624 themeOf expression,induce

DLUT931

Id Subject Object Predicate Lexical cue
T569 4-12 Protein denotes SerpinB2
T570 16-54 Protein denotes plasminogen activator inhibitor type 2
T571 56-61 Protein denotes PAI-2
T572 314-322 Protein denotes SerpinB2
T573 342-362 Protein denotes toll-like receptor 4
T574 364-368 Protein denotes TLR4
T575 571-579 Protein denotes SerpinB2
T576 456-464 Protein denotes SerpinB2
T589 73-80 Positive_regulation denotes induced
T590 323-333 Gene_expression denotes expression
T591 307-313 Positive_regulation denotes induce
R684 T570 T589 themeOf plasminogen activator inhibitor type 2,induced
R683 T569 T589 themeOf SerpinB2,induced
R685 T572 T590 themeOf SerpinB2,expression
R686 T573 T591 causeOf toll-like receptor 4,induce
R693 T590 T591 themeOf expression,induce

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T760 401-429 Localization denotes 24 hrs in murine macrophages
T759 314-333 Gene_expression denotes SerpinB2 expression
T753 571-579 Protein denotes SerpinB2
T750 267-270 Entity denotes LPS
T748 314-322 Protein denotes SerpinB2
T705 184-194 Entity denotes macrophage
T709 247-272 Entity denotes Lipopolysaccharide (LPS),
T711 292-301 Entity denotes endotoxin
T714 338-369 Protein denotes the toll-like receptor 4 (TLR4)
T715 364-368 Protein denotes TLR4
T719 401-429 Protein denotes 24 hrs in murine macrophages
T720 456-464 Protein denotes SerpinB2
T722 668-671 Entity denotes DNA
T723 84-95 Entity denotes macrophages
T724 411-429 Entity denotes murine macrophages
T726 619-637 Entity denotes murine macrophages
T729 438-482 Entity denotes the LPS-regulated SerpinB2 promoter regions,
T733 220-245 Entity denotes of plasminogen activators
T739 56-61 Protein denotes PAI-2
T740 4-62 Protein denotes SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2)
T741 442-455 Entity denotes LPS-regulated
T743 557-584 Protein denotes of the murine SerpinB2 gene
T744 16-62 Protein denotes plasminogen activator inhibitor type 2 (PAI-2)
T745 223-234 Protein denotes plasminogen
R348 T748 T759 themeOf SerpinB2,SerpinB2 expression
R721 T719 T760 themeOf 24 hrs in murine macrophages,24 hrs in murine macrophages
R723 T724 T760 locationOf murine macrophages,24 hrs in murine macrophages

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T649 564-584 Protein denotes murine SerpinB2 gene
T648 456-473 Protein denotes SerpinB2 promoter
T647 307-313 Positive_regulation denotes induce
T646 323-333 Gene_expression denotes expression
T645 314-322 Protein denotes SerpinB2
T644 209-219 Negative_regulation denotes inhibition
T643 73-80 Positive_regulation denotes induced
T642 73-80 Positive_regulation denotes induced
T641 223-245 Protein denotes plasminogen activators
T640 56-61 Protein denotes PAI-2
T639 16-54 Protein denotes plasminogen activator inhibitor type 2
R322 T640 T643 themeOf PAI-2,induced
R323 T641 T644 themeOf plasminogen activators,inhibition
R324 T645 T646 themeOf SerpinB2,expression
R325 T646 T647 themeOf expression,induce
R706 T639 T642 themeOf plasminogen activator inhibitor type 2,induced

testone

Id Subject Object Predicate Lexical cue
T40 323-333 Gene_expression denotes expression
T39 307-313 Positive_regulation denotes induce
T29 571-579 Protein denotes SerpinB2
T28 456-464 Protein denotes SerpinB2
T27 364-368 Protein denotes TLR4
T26 342-362 Protein denotes toll-like receptor 4
T25 314-322 Protein denotes SerpinB2
T24 56-61 Protein denotes PAI-2
T23 16-54 Protein denotes plasminogen activator inhibitor type 2
T22 4-12 Protein denotes SerpinB2
R3 T27 T26 equivalentTo TLR4,toll-like receptor 4
R8 T40 T39 themeOf expression,induce
R1 T24 T23 equivalentTo PAI-2,plasminogen activator inhibitor type 2
R2 T25 T40 themeOf SerpinB2,expression

test3

Id Subject Object Predicate Lexical cue
T80 571-579 Protein denotes SerpinB2
T79 456-464 Protein denotes SerpinB2
T78 364-368 Protein denotes TLR4
T77 342-362 Protein denotes toll-like receptor 4
T76 323-333 Gene_expression denotes expression
T75 314-322 Protein denotes SerpinB2
T74 307-313 Positive_regulation denotes induce
T73 73-80 Positive_regulation denotes induced
T72 56-61 Protein denotes PAI-2
T71 16-54 Protein denotes plasminogen activator inhibitor type 2
T70 4-12 Protein denotes SerpinB2
T58 571-579 Protein denotes SerpinB2
T57 456-464 Protein denotes SerpinB2
T56 364-368 Protein denotes TLR4
T55 342-362 Protein denotes toll-like receptor 4
T54 314-322 Protein denotes SerpinB2
T53 56-61 Protein denotes PAI-2
T52 16-54 Protein denotes plasminogen activator inhibitor type 2
T51 4-12 Protein denotes SerpinB2
R15 T71 T73 themeOf plasminogen activator inhibitor type 2,induced
R16 T72 T71 equivalentTo PAI-2,plasminogen activator inhibitor type 2
R17 T75 T76 themeOf SerpinB2,expression
R18 T76 T74 themeOf expression,induce
R19 T78 T77 equivalentTo TLR4,toll-like receptor 4