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PMC:3589482 / 1335-1679 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1029 333-343 JJ denotes peritoneal
T1028 321-332 JJ denotes β-deficient
T1027 320-321 : denotes -
T1026 315-320 NNP denotes C/EBP
T1025 307-314 JJ denotes primary
T1024 303-306 CC denotes and
T1023 301-302 -RRB- denotes )
T1022 297-301 NNS denotes MEFs
T1021 296-297 -LRB- denotes (
T1020 284-295 NNS denotes fibroblasts
T1019 274-283 JJ denotes embryonic
T1018 268-273 NN denotes mouse
T1017 261-267 JJ denotes β-null
T1016 260-261 : denotes -
T1015 255-260 NNP denotes C/EBP
T1014 252-254 IN denotes in
T1013 242-251 VBN denotes abrogated
T1012 233-241 RB denotes severely
T1011 229-232 VBD denotes was
T1010 218-228 NN denotes expression
T1009 209-217 JJ denotes SerpinB2
T1008 197-208 JJ denotes LPS-induced
T1007 193-196 CC denotes and
T1006 180-192 JJ denotes constitutive
T1005 175-179 DT denotes both
T1004 173-174 , denotes ,
T1003 162-173 RB denotes Importantly
T1002 160-161 . denotes .
T1001 152-160 NN denotes promoter
T1000 143-151 NNP denotes SerpinB2
T999 139-142 DT denotes the
T998 134-138 IN denotes with
T997 124-133 NNS denotes complexes
T996 113-123 VBG denotes containing
T995 111-112 NN denotes β
T994 110-111 : denotes -
T993 105-110 NNP denotes C/EBP
T992 102-104 IN denotes of
T991 92-101 NN denotes formation
T990 88-91 DT denotes the
T989 80-87 VBZ denotes induces
T988 76-79 NNP denotes LPS
T987 71-75 IN denotes that
T986 58-70 VBD denotes demonstrated
T985 51-57 NNS denotes assays
T984 49-50 -RRB- denotes )
T983 45-49 NNP denotes ChIP
T982 44-45 -LRB- denotes (
T981 24-43 NN denotes immunoprecipitation
T980 14-23 NN denotes chromatin
T979 10-13 CC denotes and
T978 8-9 -RRB- denotes )
T977 4-8 NNP denotes EMSA
T976 3-4 -LRB- denotes (
R563 T976 T977 punct (,EMSA
R565 T978 T977 punct ),EMSA
R567 T980 T981 compound chromatin,immunoprecipitation
R569 T982 T981 punct (,immunoprecipitation
R570 T983 T981 appos ChIP,immunoprecipitation
R571 T984 T981 punct ),immunoprecipitation
R572 T985 T986 nsubj assays,demonstrated
R573 T986 T986 ROOT demonstrated,demonstrated
R574 T987 T989 mark that,induces
R575 T988 T989 nsubj LPS,induces
R576 T989 T986 ccomp induces,demonstrated
R577 T990 T991 det the,formation
R578 T991 T989 dobj formation,induces
R579 T992 T991 prep of,formation
R580 T993 T995 compound C/EBP,β
R581 T994 T995 punct -,β
R582 T995 T992 pobj β,of
R583 T996 T995 acl containing,β
R584 T997 T996 dobj complexes,containing
R585 T998 T997 prep with,complexes
R586 T999 T1001 det the,promoter
R587 T1000 T1001 compound SerpinB2,promoter
R588 T1001 T998 pobj promoter,with
R589 T1002 T986 punct .,demonstrated
R590 T1003 T1013 advmod Importantly,abrogated
R591 T1004 T1013 punct ",",abrogated
R592 T1005 T1006 preconj both,constitutive
R593 T1006 T1010 amod constitutive,expression
R594 T1007 T1006 cc and,constitutive
R595 T1008 T1006 conj LPS-induced,constitutive
R596 T1009 T1010 amod SerpinB2,expression
R597 T1010 T1013 nsubjpass expression,abrogated
R598 T1011 T1013 auxpass was,abrogated
R599 T1012 T1013 advmod severely,abrogated
R600 T1013 T1013 ROOT abrogated,abrogated
R601 T1014 T1013 prep in,abrogated
R602 T1015 T1014 pobj C/EBP,in
R603 T1016 T1013 punct -,abrogated
R604 T1017 T1013 advcl β-null,abrogated
R605 T1018 T1020 nmod mouse,fibroblasts
R606 T1019 T1020 amod embryonic,fibroblasts
R607 T1020 T1017 appos fibroblasts,β-null
R608 T1021 T1022 punct (,MEFs
R609 T1022 T1020 appos MEFs,fibroblasts
R610 T1023 T1020 punct ),fibroblasts
R611 T1024 T1020 cc and,fibroblasts
R614 T1027 T1028 punct -,β-deficient

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T475 333-343 JJ denotes peritoneal
T474 315-332 JJ denotes C/EBP-β-deficient
T473 307-314 JJ denotes primary
T472 303-306 CC denotes and
T471 301-302 -RRB- denotes )
T470 297-301 NN denotes MEFs
T469 296-297 -LRB- denotes (
T468 284-295 NN denotes fibroblasts
T467 274-283 JJ denotes embryonic
T466 268-273 NN denotes mouse
T465 255-267 JJ denotes C/EBP-β-null
T464 252-254 IN denotes in
T463 242-251 VB denotes abrogated
T462 233-241 RB denotes severely
T461 229-232 VB denotes was
T460 218-228 NN denotes expression
T459 209-217 NN denotes SerpinB2
T458 197-208 JJ denotes LPS-induced
T457 193-196 CC denotes and
T456 180-192 JJ denotes constitutive
T455 175-179 CC denotes both
T454 173-174 -COMMA- denotes ,
T453 162-173 RB denotes Importantly
T452 152-160 NN denotes promoter
T451 143-151 NN denotes SerpinB2
T450 139-142 DT denotes the
T449 134-138 IN denotes with
T448 124-133 NN denotes complexes
T447 113-123 VB denotes containing
T446 105-112 NN denotes C/EBP-β
T445 102-104 IN denotes of
T444 92-101 NN denotes formation
T443 88-91 DT denotes the
T442 80-87 VB denotes induces
T441 76-79 NN denotes LPS
T440 71-75 IN denotes that
T439 58-70 VB denotes demonstrated
T438 51-57 NN denotes assays
T437 49-50 -RRB- denotes )
T436 45-49 NN denotes ChIP
T435 44-45 -LRB- denotes (
T434 24-43 NN denotes immunoprecipitation
T433 14-23 NN denotes chromatin
T432 10-13 CC denotes and
T431 8-9 -RRB- denotes )
T430 4-8 NN denotes EMSA
T429 3-4 -LRB- denotes (
R241 T430 T429 arg2Of EMSA,(
R242 T431 T429 arg3Of ),(
R243 T434 T432 arg2Of immunoprecipitation,and
R244 T434 T433 arg1Of immunoprecipitation,chromatin
R245 T434 T435 arg1Of immunoprecipitation,(
R246 T436 T435 arg2Of ChIP,(
R247 T437 T435 arg3Of ),(
R249 T438 T434 arg1Of assays,immunoprecipitation
R250 T438 T439 arg1Of assays,demonstrated
R251 T441 T442 arg1Of LPS,induces
R252 T442 T439 arg2Of induces,demonstrated
R253 T442 T440 arg1Of induces,that
R254 T444 T442 arg2Of formation,induces
R255 T444 T443 arg1Of formation,the
R256 T444 T445 arg1Of formation,of
R257 T446 T445 arg2Of C/EBP-β,of
R258 T446 T447 arg1Of C/EBP-β,containing
R259 T448 T447 arg2Of complexes,containing
R260 T448 T449 arg1Of complexes,with
R261 T452 T449 arg2Of promoter,with
R262 T452 T450 arg1Of promoter,the
R263 T452 T451 arg1Of promoter,SerpinB2
R264 T456 T457 arg1Of constitutive,and
R265 T458 T457 arg2Of LPS-induced,and
R266 T460 T455 arg1Of expression,both
R267 T460 T456 arg1Of expression,constitutive
R268 T460 T458 arg1Of expression,LPS-induced
R269 T460 T459 arg1Of expression,SerpinB2
R270 T460 T461 arg1Of expression,was
R271 T460 T463 arg2Of expression,abrogated
R272 T463 T453 arg1Of abrogated,Importantly
R273 T463 T454 arg1Of abrogated,","
R274 T463 T461 arg2Of abrogated,was
R275 T463 T462 arg1Of abrogated,severely
R276 T463 T464 arg1Of abrogated,in
R277 T468 T465 arg1Of fibroblasts,C/EBP-β-null
R278 T468 T466 arg1Of fibroblasts,mouse
R279 T468 T467 arg1Of fibroblasts,embryonic
R280 T468 T469 arg1Of fibroblasts,(
R281 T468 T472 arg1Of fibroblasts,and
R282 T470 T469 arg2Of MEFs,(
R283 T471 T469 arg3Of ),(
R284 T472 T464 arg2Of and,in

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T169 105-112 Protein denotes C/EBP-β
T170 143-151 Protein denotes SerpinB2
T171 209-217 Protein denotes SerpinB2
T172 255-262 Protein denotes C/EBP-β
T173 315-322 Protein denotes C/EBP-β

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T525 105-112 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T526 255-262 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T527 315-322 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T535 143-151 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T536 209-217 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T186 92-101 http://purl.obolibrary.org/obo/GO_0009058 denotes formation

GO-CC

Id Subject Object Predicate Lexical cue
T190 14-23 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin

simple1

Id Subject Object Predicate Lexical cue
T226 315-322 Protein denotes C/EBP-β
T222 105-112 Protein denotes C/EBP-β
T223 143-151 Protein denotes SerpinB2
T224 209-217 Protein denotes SerpinB2
T225 255-262 Protein denotes C/EBP-β

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T520 242-251 Negative_regulation denotes abrogated
T519 218-228 Gene_expression denotes expression
T518 323-332 Negative_regulation denotes deficient
T517 197-208 Positive_regulation denotes LPS-induced
T516 80-87 Positive_regulation denotes induces
T515 92-101 Binding denotes formation
T507 315-322 Protein denotes C/EBP-β
T506 255-262 Protein denotes C/EBP-β
T505 209-217 Protein denotes SerpinB2
T504 143-151 Protein denotes SerpinB2
T503 105-112 Protein denotes C/EBP-β
R302 T503 T515 themeOf C/EBP-β,formation
R303 T504 T515 themeOf SerpinB2,formation
R304 T505 T519 themeOf SerpinB2,expression
R305 T507 T518 themeOf C/EBP-β,deficient
R309 T515 T516 themeOf formation,induces
R310 T515 T516 themeOf formation,induces
R311 T519 T520 themeOf expression,abrogated
R312 T519 T517 themeOf expression,LPS-induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T630 197-208 Positive_regulation denotes LPS-induced
T631 218-228 Gene_expression denotes expression
T613 105-112 Protein denotes C/EBP-β
T614 143-151 Protein denotes SerpinB2
T615 209-217 Protein denotes SerpinB2
T616 255-262 Protein denotes C/EBP-β
T617 315-322 Protein denotes C/EBP-β
T625 92-101 Localization denotes formation
T626 80-87 Positive_regulation denotes induces
T627 263-267 Negative_regulation denotes null
T628 323-332 Negative_regulation denotes deficient
T629 242-251 Negative_regulation denotes abrogated
R722 T613 T625 themeOf C/EBP-β,formation
R725 T614 T626 themeOf SerpinB2,induces
R726 T614 T625 themeOf SerpinB2,formation
R734 T625 T626 themeOf formation,induces
R735 T625 T626 themeOf formation,induces
R737 T631 T629 themeOf expression,abrogated
R727 T615 T631 themeOf SerpinB2,expression
R729 T616 T627 themeOf C/EBP-β,null
R730 T617 T628 themeOf C/EBP-β,deficient
R736 T628 T629 causeOf deficient,abrogated
R740 T631 T630 themeOf expression,LPS-induced

DLUT931

Id Subject Object Predicate Lexical cue
T596 197-208 Positive_regulation denotes LPS-induced
T595 180-192 Positive_regulation denotes constitutive
T594 323-332 Negative_regulation denotes deficient
T593 242-251 Negative_regulation denotes abrogated
T592 218-228 Gene_expression denotes expression
T579 105-112 Protein denotes C/EBP-β
T580 143-151 Protein denotes SerpinB2
T581 209-217 Protein denotes SerpinB2
T582 255-262 Protein denotes C/EBP-β
T583 315-322 Protein denotes C/EBP-β
R318 T592 T596 themeOf expression,LPS-induced
R316 T592 T593 themeOf expression,abrogated
R687 T581 T592 themeOf SerpinB2,expression
R688 T583 T594 themeOf C/EBP-β,deficient
R317 T592 T595 themeOf expression,constitutive

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T757 88-160 Gene_expression denotes the formation of C/EBP-β containing complexes with the SerpinB2 promoter
T754 139-160 Entity denotes the SerpinB2 promoter
T708 274-302 Entity denotes embryonic fibroblasts (MEFs)
T710 143-151 Protein denotes SerpinB2
T712 255-262 Protein denotes C/EBP-β
T717 209-217 Protein denotes SerpinB2
T718 102-160 Protein denotes of C/EBP-β containing complexes with the SerpinB2 promoter
T721 297-301 Protein denotes MEFs
T735 76-79 Entity denotes LPS
T736 197-208 Entity denotes LPS-induced
T737 124-160 Entity denotes complexes with the SerpinB2 promoter
T746 14-23 Entity denotes chromatin
R719 T718 T757 themeOf of C/EBP-β containing complexes with the SerpinB2 promoter,the formation of C/EBP-β containing complexes with the SerpinB2 promoter

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T665 323-332 Negative_regulation denotes deficient
T664 242-251 Negative_regulation denotes abrogated
T663 218-228 Gene_expression denotes expression
T662 315-322 Protein denotes C/EBP-β
T661 255-262 Protein denotes C/EBP-β
T660 209-217 Protein denotes SerpinB2
T659 80-87 Positive_regulation denotes induces
T658 80-87 Positive_regulation denotes induces
T657 124-133 Binding denotes complexes
T656 124-133 Binding denotes complexes
T655 143-160 Protein denotes SerpinB2 promoter
T654 105-112 Protein denotes C/EBP-β
R326 T654 T656 themeOf C/EBP-β,complexes
R327 T654 T657 themeOf C/EBP-β,complexes
R328 T655 T657 themeOf SerpinB2 promoter,complexes
R329 T656 T658 themeOf complexes,induces
R330 T657 T659 themeOf complexes,induces
R331 T660 T663 themeOf SerpinB2,expression
R332 T662 T665 themeOf C/EBP-β,deficient
R333 T663 T664 themeOf expression,abrogated

testone

Id Subject Object Predicate Lexical cue
T46 323-332 Negative_regulation denotes deficient
T45 263-267 Negative_regulation denotes null
T44 242-251 Negative_regulation denotes abrogated
T43 218-228 Gene_expression denotes expression
T42 201-208 Positive_regulation denotes induced
T41 80-87 Positive_regulation denotes induces
T36 315-322 Protein denotes C/EBP-β
T35 255-262 Protein denotes C/EBP-β
T34 209-217 Protein denotes SerpinB2
T33 143-151 Protein denotes SerpinB2
T32 105-112 Protein denotes C/EBP-β
R4 T34 T43 themeOf SerpinB2,expression
R6 T36 T46 themeOf C/EBP-β,deficient
R9 T42 T44 themeOf induced,abrogated
R10 T43 T42 themeOf expression,induced
R11 T43 T44 themeOf expression,abrogated
R12 T45 T44 causeOf null,abrogated
R13 T46 T44 causeOf deficient,abrogated
R5 T35 T45 themeOf C/EBP-β,null

test3

Id Subject Object Predicate Lexical cue
T93 323-332 Negative_regulation denotes deficient
T92 315-322 Protein denotes C/EBP-β
T91 263-267 Negative_regulation denotes null
T90 255-262 Protein denotes C/EBP-β
T89 242-251 Negative_regulation denotes abrogated
T88 218-228 Gene_expression denotes expression
T87 209-217 Protein denotes SerpinB2
T86 201-208 Positive_regulation denotes induced
T85 143-151 Protein denotes SerpinB2
T84 105-112 Protein denotes C/EBP-β
T83 80-87 Positive_regulation denotes induces
T65 315-322 Protein denotes C/EBP-β
T64 255-262 Protein denotes C/EBP-β
T63 209-217 Protein denotes SerpinB2
T62 143-151 Protein denotes SerpinB2
T61 105-112 Protein denotes C/EBP-β
R21 T87 T88 themeOf SerpinB2,expression
R22 T88 T86 themeOf expression,induced
R23 T88 T89 themeOf expression,abrogated
R24 T90 T91 themeOf C/EBP-β,null
R25 T91 T89 causeOf null,abrogated
R26 T92 T93 themeOf C/EBP-β,deficient
R20 T86 T89 themeOf induced,abrogated
R27 T93 T89 causeOf deficient,abrogated