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PMC:3589482 / 0-694 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T765 18-24 NNP denotes Factor
T766 25-30 NNP denotes C/EBP
T767 30-31 : denotes -
T768 31-32 NN denotes β
T769 33-41 NNP denotes Mediates
T770 42-54 NNP denotes Constitutive
T771 55-58 CC denotes and
T772 59-72 JJ denotes LPS-Inducible
T773 73-86 NN denotes Transcription
T774 87-89 IN denotes of
T775 90-96 NNP denotes Murine
T776 97-105 NNP denotes SerpinB2
T856 617-625 NN denotes promoter
T855 608-616 CD denotes SerpinB2
T854 594-607 JJ denotes LPS-regulated
T853 590-593 DT denotes the
T852 586-589 VB denotes map
T851 583-585 TO denotes To
T850 581-582 . denotes .
T849 570-581 NNS denotes macrophages
T848 563-569 JJ denotes murine
T847 560-562 IN denotes in
T846 556-559 NNS denotes hrs
T845 553-555 CD denotes 24
T844 550-552 IN denotes of
T843 543-549 NN denotes period
T842 541-542 DT denotes a
T841 536-540 IN denotes over
T840 526-535 JJ denotes 1000-fold
T839 525-526 CD denotes ∼
T838 522-524 IN denotes by
T837 520-521 -RRB- denotes )
T836 516-520 CD denotes TLR4
T835 515-516 -LRB- denotes (
T834 513-514 CD denotes 4
T833 504-512 NN denotes receptor
T832 494-503 JJ denotes toll-like
T831 490-493 DT denotes the
T830 486-489 IN denotes via
T829 475-485 NN denotes expression
T828 466-474 NNP denotes SerpinB2
T827 459-465 VB denotes induce
T826 455-458 MD denotes can
T825 453-454 , denotes ,
T824 444-453 NN denotes endotoxin
T823 434-443 JJ denotes bacterial
T822 427-433 JJ denotes potent
T821 425-426 DT denotes a
T820 423-424 , denotes ,
T819 422-423 -RRB- denotes )
T818 419-422 NNP denotes LPS
T817 418-419 -LRB- denotes (
T816 399-417 NNP denotes Lipopolysaccharide
T815 397-398 . denotes .
T814 387-397 NNS denotes activators
T813 375-386 NN denotes plasminogen
T812 372-374 IN denotes of
T811 361-371 NN denotes inhibition
T810 357-360 CC denotes and
T809 355-356 , denotes ,
T808 347-355 NN denotes survival
T807 336-346 NN denotes macrophage
T806 334-335 , denotes ,
T805 326-334 NN denotes immunity
T804 319-325 NN denotes innate
T803 316-318 IN denotes of
T802 305-315 NN denotes modulation
T801 301-304 DT denotes the
T800 298-300 TO denotes to
T799 291-297 VBN denotes linked
T798 288-290 VBZ denotes is
T797 284-287 CC denotes and
T796 276-283 NNS denotes stimuli
T795 263-275 JJ denotes inflammatory
T794 260-262 TO denotes to
T793 251-259 NN denotes response
T792 248-250 IN denotes in
T791 236-247 NNS denotes macrophages
T790 233-235 IN denotes in
T789 225-232 VBN denotes induced
T788 218-224 RB denotes highly
T787 215-217 VBZ denotes is
T786 213-214 -RRB- denotes )
T785 208-213 NN denotes PAI-2
T784 207-208 -LRB- denotes (
T783 205-206 CD denotes 2
T782 200-204 NN denotes type
T781 190-199 NN denotes inhibitor
T780 180-189 NN denotes activator
T779 168-179 NN denotes plasminogen
T778 165-167 CC denotes or
T777 156-164 NNP denotes SerpinB2
T871 692-693 : denotes -
T870 691-692 '' denotes '
T869 690-691 CD denotes 5
T868 687-689 NN denotes kb
T867 685-686 CD denotes 5
T866 684-685 NN denotes ∼
T865 680-683 DT denotes the
T864 677-679 IN denotes by
T863 670-676 VBN denotes driven
T862 659-669 NNS denotes constructs
T861 650-658 NN denotes reporter
T860 638-649 VBD denotes transfected
T859 635-637 PRP denotes we
T858 633-634 , denotes ,
T857 626-633 NNS denotes regions
T763 0-3 DT denotes The
T764 4-17 NNP denotes Transcription
R352 T765 T770 nmod Factor,Constitutive
R353 T766 T768 compound C/EBP,β
R354 T767 T768 punct -,β
R355 T768 T770 compound β,Constitutive
R356 T769 T770 compound Mediates,Constitutive
R357 T770 T773 nmod Constitutive,Transcription
R358 T771 T770 cc and,Constitutive
R359 T772 T770 conj LPS-Inducible,Constitutive
R360 T773 T789 nsubjpass Transcription,induced
R361 T774 T773 prep of,Transcription
R362 T775 T777 compound Murine,SerpinB2
R363 T776 T777 compound SerpinB2,SerpinB2
R364 T777 T774 pobj SerpinB2,of
R365 T778 T777 cc or,SerpinB2
R366 T779 T773 conj plasminogen,Transcription
R367 T780 T781 amod activator,inhibitor
R368 T781 T782 compound inhibitor,type
R369 T782 T773 appos type,Transcription
R370 T783 T782 nummod 2,type
R371 T784 T782 punct (,type
R372 T785 T782 appos PAI-2,type
R373 T786 T782 punct ),type
R374 T787 T789 auxpass is,induced
R375 T788 T789 advmod highly,induced
R376 T789 T789 ROOT induced,induced
R377 T790 T789 prep in,induced
R378 T791 T790 pobj macrophages,in
R379 T792 T789 prep in,induced
R380 T793 T792 pobj response,in
R381 T794 T793 prep to,response
R382 T795 T796 amod inflammatory,stimuli
R383 T796 T794 pobj stimuli,to
R384 T797 T789 cc and,induced
R385 T798 T799 auxpass is,linked
R386 T799 T789 conj linked,induced
R387 T800 T799 prep to,linked
R388 T801 T802 det the,modulation
R389 T802 T800 pobj modulation,to
R390 T803 T802 prep of,modulation
R391 T804 T805 amod innate,immunity
R392 T805 T803 pobj immunity,of
R393 T806 T802 punct ",",modulation
R394 T807 T808 compound macrophage,survival
R395 T808 T802 conj survival,modulation
R396 T809 T808 punct ",",survival
R397 T810 T808 cc and,survival
R398 T811 T808 conj inhibition,survival
R399 T812 T811 prep of,inhibition
R400 T813 T814 compound plasminogen,activators
R401 T814 T812 pobj activators,of
R402 T815 T789 punct .,induced
R403 T816 T827 npadvmod Lipopolysaccharide,induce
R404 T817 T818 punct (,LPS
R405 T818 T816 appos LPS,Lipopolysaccharide
R406 T819 T816 punct ),Lipopolysaccharide
R407 T820 T816 punct ",",Lipopolysaccharide
R408 T821 T824 det a,endotoxin
R409 T822 T824 amod potent,endotoxin
R410 T823 T824 amod bacterial,endotoxin
R411 T824 T816 appos endotoxin,Lipopolysaccharide
R412 T825 T827 punct ",",induce
R413 T826 T827 aux can,induce
R414 T827 T827 ROOT induce,induce
R415 T828 T829 compound SerpinB2,expression
R416 T829 T827 dobj expression,induce
R417 T830 T827 prep via,induce
R418 T831 T833 det the,receptor
R419 T832 T833 amod toll-like,receptor
R420 T833 T830 pobj receptor,via
R421 T834 T833 nummod 4,receptor
R422 T835 T833 punct (,receptor
R423 T836 T833 appos TLR4,receptor
R424 T837 T833 punct ),receptor
R425 T838 T827 prep by,induce
R426 T839 T838 pobj ∼,by
R427 T840 T827 advcl 1000-fold,induce
R428 T841 T840 prep over,1000-fold
R429 T842 T843 det a,period
R430 T843 T841 pobj period,over
R431 T844 T843 prep of,period
R432 T845 T846 nummod 24,hrs
R433 T846 T844 pobj hrs,of
R434 T847 T846 prep in,hrs
R435 T848 T849 amod murine,macrophages
R436 T849 T847 pobj macrophages,in
R437 T850 T827 punct .,induce
R438 T851 T852 aux To,map
R439 T852 T860 advcl map,transfected
R440 T853 T857 det the,regions
R441 T854 T857 amod LPS-regulated,regions
R442 T855 T857 nummod SerpinB2,regions
R443 T856 T857 compound promoter,regions
R444 T857 T852 dobj regions,map
R445 T858 T860 punct ",",transfected
R446 T859 T860 nsubj we,transfected
R447 T860 T860 ROOT transfected,transfected
R448 T861 T862 compound reporter,constructs
R449 T862 T860 dobj constructs,transfected
R450 T863 T862 acl driven,constructs
R451 T864 T863 agent by,driven
R453 T866 T868 nmod ∼,kb
R454 T867 T866 nummod 5,∼
R456 T869 T868 nummod 5,kb
R457 T870 T869 punct ',5
R738 T763 T773 det The,Transcription
R739 T764 T770 nmod Transcription,Constitutive

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T239 90-96 NNP denotes Murine
T240 97-105 NN denotes SerpinB2
T267 316-318 IN denotes of
T266 305-315 NN denotes modulation
T265 301-304 DT denotes the
T264 298-300 TO denotes to
T263 291-297 VB denotes linked
T262 288-290 VB denotes is
T261 284-287 CC denotes and
T260 276-283 NN denotes stimuli
T259 263-275 JJ denotes inflammatory
T258 260-262 TO denotes to
T257 251-259 NN denotes response
T256 248-250 IN denotes in
T255 236-247 NN denotes macrophages
T254 233-235 IN denotes in
T253 225-232 VB denotes induced
T252 218-224 RB denotes highly
T251 215-217 VB denotes is
T250 213-214 -RRB- denotes )
T249 208-213 NN denotes PAI-2
T248 207-208 -LRB- denotes (
T247 205-206 CD denotes 2
T246 200-204 NN denotes type
T245 190-199 NN denotes inhibitor
T244 180-189 NN denotes activator
T243 168-179 NN denotes plasminogen
T242 165-167 CC denotes or
T241 156-164 NN denotes SerpinB2
T307 553-555 CD denotes 24
T306 550-552 IN denotes of
T305 543-549 NN denotes period
T304 541-542 DT denotes a
T303 536-540 IN denotes over
T302 525-535 RB denotes ∼1000-fold
T301 522-524 IN denotes by
T300 520-521 -RRB- denotes )
T299 516-520 NN denotes TLR4
T298 515-516 -LRB- denotes (
T297 513-514 CD denotes 4
T296 504-512 NN denotes receptor
T295 494-503 JJ denotes toll-like
T294 490-493 DT denotes the
T293 486-489 IN denotes via
T292 475-485 NN denotes expression
T291 466-474 NN denotes SerpinB2
T290 459-465 VB denotes induce
T289 455-458 MD denotes can
T288 453-454 -COMMA- denotes ,
T287 444-453 NN denotes endotoxin
T286 434-443 JJ denotes bacterial
T285 427-433 JJ denotes potent
T284 425-426 DT denotes a
T283 423-424 -COMMA- denotes ,
T282 422-423 -RRB- denotes )
T281 419-422 NN denotes LPS
T280 418-419 -LRB- denotes (
T279 399-417 NN denotes Lipopolysaccharide
T278 387-397 NN denotes activators
T277 375-386 NN denotes plasminogen
T276 372-374 IN denotes of
T275 361-371 NN denotes inhibition
T274 357-360 CC denotes and
T273 355-356 -COMMA- denotes ,
T272 347-355 NN denotes survival
T271 336-346 NN denotes macrophage
T270 334-335 -COMMA- denotes ,
T269 326-334 NN denotes immunity
T268 319-325 JJ denotes innate
T328 687-689 NN denotes kb
T327 684-686 CD denotes ∼5
T326 680-683 DT denotes the
T325 677-679 IN denotes by
T324 670-676 VB denotes driven
T323 659-669 NN denotes constructs
T322 650-658 NN denotes reporter
T321 638-649 VB denotes transfected
T320 635-637 PRP denotes we
T319 633-634 -COMMA- denotes ,
T318 626-633 NN denotes regions
T317 617-625 NN denotes promoter
T316 608-616 NN denotes SerpinB2
T315 594-607 JJ denotes LPS-regulated
T314 590-593 DT denotes the
T313 586-589 VB denotes map
T312 583-585 TO denotes To
T311 570-581 NN denotes macrophages
T310 563-569 JJ denotes murine
T309 560-562 IN denotes in
T308 556-559 NN denotes hrs
T229 0-3 DT denotes The
T230 4-17 NNP denotes Transcription
T231 18-24 NNP denotes Factor
T232 25-32 NNP denotes C/EBP-β
T233 33-41 NNP denotes Mediates
T234 42-54 NNP denotes Constitutive
T235 55-58 CC denotes and
T236 59-72 JJ denotes LPS-Inducible
T237 73-86 NN denotes Transcription
T238 87-89 IN denotes of
R47 T240 T238 arg2Of SerpinB2,of
R48 T240 T239 arg1Of SerpinB2,Murine
R49 T241 T242 arg1Of SerpinB2,or
R50 T243 T242 arg2Of plasminogen,or
R51 T246 T241 arg1Of type,SerpinB2
R52 T246 T243 arg1Of type,plasminogen
R53 T246 T244 arg1Of type,activator
R54 T246 T245 arg1Of type,inhibitor
R55 T246 T247 arg1Of type,2
R56 T246 T248 arg1Of type,(
R57 T246 T251 arg1Of type,is
R58 T246 T253 arg2Of type,induced
R59 T246 T262 arg1Of type,is
R60 T246 T263 arg2Of type,linked
R61 T249 T248 arg2Of PAI-2,(
R62 T250 T248 arg3Of ),(
R63 T253 T251 arg2Of induced,is
R64 T253 T252 arg1Of induced,highly
R65 T253 T254 arg1Of induced,in
R66 T253 T256 arg1Of induced,in
R67 T253 T261 arg1Of induced,and
R68 T255 T254 arg2Of macrophages,in
R69 T257 T256 arg2Of response,in
R70 T257 T258 arg1Of response,to
R71 T260 T258 arg2Of stimuli,to
R72 T260 T259 arg1Of stimuli,inflammatory
R73 T263 T261 arg2Of linked,and
R74 T263 T262 arg2Of linked,is
R75 T263 T264 arg1Of linked,to
R76 T266 T264 arg2Of modulation,to
R77 T266 T265 arg1Of modulation,the
R78 T266 T267 arg1Of modulation,of
R79 T269 T268 arg1Of immunity,innate
R80 T269 T270 arg1Of immunity,","
R81 T270 T274 arg1Of ",",and
R82 T272 T270 arg2Of survival,","
R83 T272 T271 arg1Of survival,macrophage
R84 T274 T267 arg2Of and,of
R85 T274 T273 arg1Of and,","
R86 T275 T274 arg2Of inhibition,and
R87 T275 T276 arg1Of inhibition,of
R88 T278 T276 arg2Of activators,of
R89 T278 T277 arg1Of activators,plasminogen
R90 T279 T280 arg1Of Lipopolysaccharide,(
R91 T279 T283 arg1Of Lipopolysaccharide,","
R92 T279 T289 arg1Of Lipopolysaccharide,can
R93 T279 T290 arg1Of Lipopolysaccharide,induce
R94 T281 T280 arg2Of LPS,(
R95 T282 T280 arg3Of ),(
R96 T287 T283 arg2Of endotoxin,","
R97 T287 T284 arg1Of endotoxin,a
R98 T287 T285 arg1Of endotoxin,potent
R99 T287 T286 arg1Of endotoxin,bacterial
R100 T290 T288 arg1Of induce,","
R101 T290 T289 arg2Of induce,can
R102 T290 T293 arg1Of induce,via
R103 T290 T301 arg1Of induce,by
R104 T290 T303 arg1Of induce,over
R105 T292 T290 arg2Of expression,induce
R106 T292 T291 arg1Of expression,SerpinB2
R107 T296 T293 arg2Of receptor,via
R108 T296 T294 arg1Of receptor,the
R109 T296 T295 arg1Of receptor,toll-like
R110 T296 T297 arg1Of receptor,4
R111 T296 T298 arg1Of receptor,(
R112 T299 T298 arg2Of TLR4,(
R113 T300 T298 arg3Of ),(
R114 T302 T301 arg2Of ∼1000-fold,by
R115 T305 T303 arg2Of period,over
R116 T305 T304 arg1Of period,a
R117 T305 T306 arg1Of period,of
R118 T305 T309 arg1Of period,in
R119 T308 T306 arg2Of hrs,of
R120 T308 T307 arg1Of hrs,24
R121 T311 T309 arg2Of macrophages,in
R122 T311 T310 arg1Of macrophages,murine
R123 T313 T312 arg1Of map,To
R124 T318 T313 arg2Of regions,map
R125 T318 T314 arg1Of regions,the
R126 T318 T315 arg1Of regions,LPS-regulated
R127 T318 T316 arg1Of regions,SerpinB2
R128 T318 T317 arg1Of regions,promoter
R129 T320 T313 arg1Of we,map
R130 T320 T321 arg1Of we,transfected
R131 T321 T312 modOf transfected,To
R132 T321 T319 arg1Of transfected,","
R133 T323 T321 arg2Of constructs,transfected
R134 T323 T322 arg1Of constructs,reporter
R135 T323 T324 arg2Of constructs,driven
R667 T234 T231 arg1Of Constitutive,Factor
R668 T234 T232 arg1Of Constitutive,C/EBP-β
R669 T234 T233 arg1Of Constitutive,Mediates
R670 T234 T235 arg1Of Constitutive,and
R671 T236 T235 arg2Of LPS-Inducible,and
R673 T237 T234 arg1Of Transcription,Constitutive
R674 T237 T236 arg1Of Transcription,LPS-Inducible
R675 T237 T238 arg1Of Transcription,of
R666 T234 T230 arg1Of Constitutive,Transcription
R672 T237 T229 arg1Of Transcription,The

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T157 25-32 Protein denotes C/EBP-β
T158 97-105 Protein denotes SerpinB2
T159 156-164 Protein denotes SerpinB2
T160 168-206 Protein denotes plasminogen activator inhibitor type 2
T161 208-213 Protein denotes PAI-2
T162 466-474 Protein denotes SerpinB2
T163 494-514 Protein denotes toll-like receptor 4
T164 516-520 Protein denotes TLR4
T165 608-616 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T539 516-520 http://www.uniprot.org/uniprot/O00206 denotes TLR4
T530 156-164 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T531 466-474 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T532 608-616 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T537 205-211 http://www.uniprot.org/uniprot/P05120 denotes 2 (PAI
T524 25-32 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T529 97-105 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T176 4-17 http://purl.obolibrary.org/obo/GO_0006351 denotes Transcription
T177 73-86 http://purl.obolibrary.org/obo/GO_0006351 denotes Transcription
T183 361-397 http://purl.obolibrary.org/obo/GO_0010757 denotes inhibition of plasminogen activators
T182 319-334 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immunity
T180 251-275 http://purl.obolibrary.org/obo/GO_0006954 denotes response to inflammatory
T179 375-397 http://purl.obolibrary.org/obo/GO_0031639 denotes plasminogen activators
T178 168-189 http://purl.obolibrary.org/obo/GO_0031639 denotes plasminogen activator

sentences

Id Subject Object Predicate Lexical cue
T99 0-105 Sentence denotes The Transcription Factor C/EBP-β Mediates Constitutive and LPS-Inducible Transcription of Murine SerpinB2
T100 156-398 Sentence denotes SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammatory stimuli and is linked to the modulation of innate immunity, macrophage survival, and inhibition of plasminogen activators.
T101 399-582 Sentence denotes Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs in murine macrophages.
T1 0-105 Sentence denotes The Transcription Factor C/EBP-β Mediates Constitutive and LPS-Inducible Transcription of Murine SerpinB2
T2 106-145 Sentence denotes C/EBP-β Mediates SerpinB2 Transcription
T3 147-155 Sentence denotes Abstract
T4 156-398 Sentence denotes SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammatory stimuli and is linked to the modulation of innate immunity, macrophage survival, and inhibition of plasminogen activators.
T5 399-582 Sentence denotes Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs in murine macrophages.

simple1

Id Subject Object Predicate Lexical cue
T210 25-32 Protein denotes C/EBP-β
T212 156-164 Protein denotes SerpinB2
T213 168-206 Protein denotes plasminogen activator inhibitor type 2
T214 208-213 Protein denotes PAI-2
T215 466-474 Protein denotes SerpinB2
T216 494-514 Protein denotes toll-like receptor 4
T217 516-520 Protein denotes TLR4
T218 608-616 Protein denotes SerpinB2
T211 97-105 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T510 59-72 Positive_regulation denotes LPS-Inducible
T511 73-86 Transcription denotes Transcription
T514 459-465 Positive_regulation denotes induce
T513 475-485 Gene_expression denotes expression
T512 225-232 Positive_regulation denotes induced
T500 608-616 Protein denotes SerpinB2
T498 516-520 Protein denotes TLR4
T491 25-32 Protein denotes C/EBP-β
T492 97-105 Protein denotes SerpinB2
T493 156-164 Protein denotes SerpinB2
T494 168-206 Protein denotes plasminogen activator inhibitor type 2
T495 208-213 Protein denotes PAI-2
T496 466-474 Protein denotes SerpinB2
T497 494-514 Protein denotes toll-like receptor 4
R307 T511 T510 themeOf Transcription,LPS-Inducible
R308 T513 T514 themeOf expression,induce
R676 T492 T511 themeOf SerpinB2,Transcription
R677 T493 T512 themeOf SerpinB2,induced
R678 T494 T512 themeOf plasminogen activator inhibitor type 2,induced
R679 T495 T512 themeOf PAI-2,induced
R680 T496 T513 themeOf SerpinB2,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T601 25-32 Protein denotes C/EBP-β
T602 97-105 Protein denotes SerpinB2
T620 73-86 Transcription denotes Transcription
T621 33-41 Positive_regulation denotes Mediates
T603 156-164 Protein denotes SerpinB2
T604 168-206 Protein denotes plasminogen activator inhibitor type 2
T605 208-213 Protein denotes PAI-2
T606 466-474 Protein denotes SerpinB2
T607 494-514 Protein denotes toll-like receptor 4
T608 516-520 Protein denotes TLR4
T610 608-616 Protein denotes SerpinB2
T622 225-232 Positive_regulation denotes induced
T623 475-485 Gene_expression denotes expression
T624 459-465 Positive_regulation denotes induce
R694 T601 T621 causeOf C/EBP-β,Mediates
R715 T602 T620 themeOf SerpinB2,Transcription
R717 T604 T622 themeOf plasminogen activator inhibitor type 2,induced
R718 T606 T623 themeOf SerpinB2,expression
R720 T607 T624 causeOf toll-like receptor 4,induce
R732 T620 T621 themeOf Transcription,Mediates
R733 T623 T624 themeOf expression,induce

DLUT931

Id Subject Object Predicate Lexical cue
T567 25-32 Protein denotes C/EBP-β
T568 97-105 Protein denotes SerpinB2
T586 73-86 Transcription denotes Transcription
T587 33-41 Positive_regulation denotes Mediates
T588 59-72 Positive_regulation denotes LPS-Inducible
T569 156-164 Protein denotes SerpinB2
T570 168-206 Protein denotes plasminogen activator inhibitor type 2
T571 208-213 Protein denotes PAI-2
T572 466-474 Protein denotes SerpinB2
T573 494-514 Protein denotes toll-like receptor 4
T574 516-520 Protein denotes TLR4
T576 608-616 Protein denotes SerpinB2
T589 225-232 Positive_regulation denotes induced
T590 475-485 Gene_expression denotes expression
T591 459-465 Positive_regulation denotes induce
R684 T570 T589 themeOf plasminogen activator inhibitor type 2,induced
R681 T567 T587 causeOf C/EBP-β,Mediates
R682 T568 T586 themeOf SerpinB2,Transcription
R683 T569 T589 themeOf SerpinB2,induced
R685 T572 T590 themeOf SerpinB2,expression
R686 T573 T591 causeOf toll-like receptor 4,induce
R691 T586 T587 themeOf Transcription,Mediates
R692 T586 T588 themeOf Transcription,LPS-Inducible
R693 T590 T591 themeOf expression,induce

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T749 87-105 Protein denotes of Murine SerpinB2
T758 59-105 Transcription denotes LPS-Inducible Transcription of Murine SerpinB2
T760 553-581 Localization denotes 24 hrs in murine macrophages
T759 466-485 Gene_expression denotes SerpinB2 expression
T750 419-422 Entity denotes LPS
T748 466-474 Protein denotes SerpinB2
T731 0-32 Protein denotes The Transcription Factor C/EBP-β
T705 336-346 Entity denotes macrophage
T709 399-424 Entity denotes Lipopolysaccharide (LPS),
T711 444-453 Entity denotes endotoxin
T714 490-521 Protein denotes the toll-like receptor 4 (TLR4)
T715 516-520 Protein denotes TLR4
T719 553-581 Protein denotes 24 hrs in murine macrophages
T720 608-616 Protein denotes SerpinB2
T723 236-247 Entity denotes macrophages
T724 563-581 Entity denotes murine macrophages
T729 590-634 Entity denotes the LPS-regulated SerpinB2 promoter regions,
T733 372-397 Entity denotes of plasminogen activators
T739 208-213 Protein denotes PAI-2
T740 156-214 Protein denotes SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2)
T741 594-607 Entity denotes LPS-regulated
T744 168-214 Protein denotes plasminogen activator inhibitor type 2 (PAI-2)
T745 375-386 Protein denotes plasminogen
R348 T748 T759 themeOf SerpinB2,SerpinB2 expression
R349 T749 T758 themeOf of Murine SerpinB2,LPS-Inducible Transcription of Murine SerpinB2
R721 T719 T760 themeOf 24 hrs in murine macrophages,24 hrs in murine macrophages
R723 T724 T760 locationOf murine macrophages,24 hrs in murine macrophages

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T648 608-625 Protein denotes SerpinB2 promoter
T647 459-465 Positive_regulation denotes induce
T646 475-485 Gene_expression denotes expression
T645 466-474 Protein denotes SerpinB2
T644 361-371 Negative_regulation denotes inhibition
T643 225-232 Positive_regulation denotes induced
T642 225-232 Positive_regulation denotes induced
T641 375-397 Protein denotes plasminogen activators
T640 208-213 Protein denotes PAI-2
T635 4-32 Protein denotes Transcription Factor C/EBP-β
T636 90-105 Protein denotes Murine SerpinB2
T637 73-86 Transcription denotes Transcription
T638 33-41 Positive_regulation denotes Mediates
T639 168-206 Protein denotes plasminogen activator inhibitor type 2
R322 T640 T643 themeOf PAI-2,induced
R323 T641 T644 themeOf plasminogen activators,inhibition
R324 T645 T646 themeOf SerpinB2,expression
R325 T646 T647 themeOf expression,induce
R703 T635 T638 causeOf Transcription Factor C/EBP-β,Mediates
R704 T636 T637 themeOf Murine SerpinB2,Transcription
R705 T637 T638 themeOf Transcription,Mediates
R706 T639 T642 themeOf plasminogen activator inhibitor type 2,induced

testone

Id Subject Object Predicate Lexical cue
T20 25-32 Protein denotes C/EBP-β
T21 97-105 Protein denotes SerpinB2
T40 475-485 Gene_expression denotes expression
T39 459-465 Positive_regulation denotes induce
T28 608-616 Protein denotes SerpinB2
T27 516-520 Protein denotes TLR4
T26 494-514 Protein denotes toll-like receptor 4
T25 466-474 Protein denotes SerpinB2
T24 208-213 Protein denotes PAI-2
T23 168-206 Protein denotes plasminogen activator inhibitor type 2
T22 156-164 Protein denotes SerpinB2
R3 T27 T26 equivalentTo TLR4,toll-like receptor 4
R8 T40 T39 themeOf expression,induce
R1 T24 T23 equivalentTo PAI-2,plasminogen activator inhibitor type 2
R2 T25 T40 themeOf SerpinB2,expression

test3

Id Subject Object Predicate Lexical cue
T49 25-32 Protein denotes C/EBP-β
T50 97-105 Protein denotes SerpinB2
T68 25-32 Protein denotes C/EBP-β
T69 97-105 Protein denotes SerpinB2
T79 608-616 Protein denotes SerpinB2
T78 516-520 Protein denotes TLR4
T77 494-514 Protein denotes toll-like receptor 4
T76 475-485 Gene_expression denotes expression
T75 466-474 Protein denotes SerpinB2
T74 459-465 Positive_regulation denotes induce
T73 225-232 Positive_regulation denotes induced
T72 208-213 Protein denotes PAI-2
T71 168-206 Protein denotes plasminogen activator inhibitor type 2
T70 156-164 Protein denotes SerpinB2
T57 608-616 Protein denotes SerpinB2
T56 516-520 Protein denotes TLR4
T55 494-514 Protein denotes toll-like receptor 4
T54 466-474 Protein denotes SerpinB2
T53 208-213 Protein denotes PAI-2
T52 168-206 Protein denotes plasminogen activator inhibitor type 2
T51 156-164 Protein denotes SerpinB2
R15 T71 T73 themeOf plasminogen activator inhibitor type 2,induced
R16 T72 T71 equivalentTo PAI-2,plasminogen activator inhibitor type 2
R17 T75 T76 themeOf SerpinB2,expression
R18 T76 T74 themeOf expression,induce
R19 T78 T77 equivalentTo TLR4,toll-like receptor 4