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PMC:3589482 / 0-359 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T765 18-24 NNP denotes Factor
T766 25-30 NNP denotes C/EBP
T767 30-31 : denotes -
T768 31-32 NN denotes β
T769 33-41 NNP denotes Mediates
T770 42-54 NNP denotes Constitutive
T771 55-58 CC denotes and
T772 59-72 JJ denotes LPS-Inducible
T773 73-86 NN denotes Transcription
T774 87-89 IN denotes of
T775 90-96 NNP denotes Murine
T776 97-105 NNP denotes SerpinB2
T809 355-356 , denotes ,
T808 347-355 NN denotes survival
T807 336-346 NN denotes macrophage
T806 334-335 , denotes ,
T805 326-334 NN denotes immunity
T804 319-325 NN denotes innate
T803 316-318 IN denotes of
T802 305-315 NN denotes modulation
T801 301-304 DT denotes the
T800 298-300 TO denotes to
T799 291-297 VBN denotes linked
T798 288-290 VBZ denotes is
T797 284-287 CC denotes and
T796 276-283 NNS denotes stimuli
T795 263-275 JJ denotes inflammatory
T794 260-262 TO denotes to
T793 251-259 NN denotes response
T792 248-250 IN denotes in
T791 236-247 NNS denotes macrophages
T790 233-235 IN denotes in
T789 225-232 VBN denotes induced
T788 218-224 RB denotes highly
T787 215-217 VBZ denotes is
T786 213-214 -RRB- denotes )
T785 208-213 NN denotes PAI-2
T784 207-208 -LRB- denotes (
T783 205-206 CD denotes 2
T782 200-204 NN denotes type
T781 190-199 NN denotes inhibitor
T780 180-189 NN denotes activator
T779 168-179 NN denotes plasminogen
T778 165-167 CC denotes or
T777 156-164 NNP denotes SerpinB2
T763 0-3 DT denotes The
T764 4-17 NNP denotes Transcription
R352 T765 T770 nmod Factor,Constitutive
R353 T766 T768 compound C/EBP,β
R354 T767 T768 punct -,β
R355 T768 T770 compound β,Constitutive
R356 T769 T770 compound Mediates,Constitutive
R357 T770 T773 nmod Constitutive,Transcription
R358 T771 T770 cc and,Constitutive
R359 T772 T770 conj LPS-Inducible,Constitutive
R360 T773 T789 nsubjpass Transcription,induced
R361 T774 T773 prep of,Transcription
R362 T775 T777 compound Murine,SerpinB2
R363 T776 T777 compound SerpinB2,SerpinB2
R364 T777 T774 pobj SerpinB2,of
R365 T778 T777 cc or,SerpinB2
R366 T779 T773 conj plasminogen,Transcription
R367 T780 T781 amod activator,inhibitor
R368 T781 T782 compound inhibitor,type
R369 T782 T773 appos type,Transcription
R370 T783 T782 nummod 2,type
R371 T784 T782 punct (,type
R372 T785 T782 appos PAI-2,type
R373 T786 T782 punct ),type
R374 T787 T789 auxpass is,induced
R375 T788 T789 advmod highly,induced
R376 T789 T789 ROOT induced,induced
R377 T790 T789 prep in,induced
R378 T791 T790 pobj macrophages,in
R379 T792 T789 prep in,induced
R380 T793 T792 pobj response,in
R381 T794 T793 prep to,response
R382 T795 T796 amod inflammatory,stimuli
R383 T796 T794 pobj stimuli,to
R384 T797 T789 cc and,induced
R385 T798 T799 auxpass is,linked
R386 T799 T789 conj linked,induced
R387 T800 T799 prep to,linked
R388 T801 T802 det the,modulation
R389 T802 T800 pobj modulation,to
R390 T803 T802 prep of,modulation
R391 T804 T805 amod innate,immunity
R392 T805 T803 pobj immunity,of
R393 T806 T802 punct ",",modulation
R394 T807 T808 compound macrophage,survival
R395 T808 T802 conj survival,modulation
R396 T809 T808 punct ",",survival
R738 T763 T773 det The,Transcription
R739 T764 T770 nmod Transcription,Constitutive

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T239 90-96 NNP denotes Murine
T240 97-105 NN denotes SerpinB2
T267 316-318 IN denotes of
T266 305-315 NN denotes modulation
T265 301-304 DT denotes the
T264 298-300 TO denotes to
T263 291-297 VB denotes linked
T262 288-290 VB denotes is
T261 284-287 CC denotes and
T260 276-283 NN denotes stimuli
T259 263-275 JJ denotes inflammatory
T258 260-262 TO denotes to
T257 251-259 NN denotes response
T256 248-250 IN denotes in
T255 236-247 NN denotes macrophages
T254 233-235 IN denotes in
T253 225-232 VB denotes induced
T252 218-224 RB denotes highly
T251 215-217 VB denotes is
T250 213-214 -RRB- denotes )
T249 208-213 NN denotes PAI-2
T248 207-208 -LRB- denotes (
T247 205-206 CD denotes 2
T246 200-204 NN denotes type
T245 190-199 NN denotes inhibitor
T244 180-189 NN denotes activator
T243 168-179 NN denotes plasminogen
T242 165-167 CC denotes or
T241 156-164 NN denotes SerpinB2
T273 355-356 -COMMA- denotes ,
T272 347-355 NN denotes survival
T271 336-346 NN denotes macrophage
T270 334-335 -COMMA- denotes ,
T269 326-334 NN denotes immunity
T268 319-325 JJ denotes innate
T229 0-3 DT denotes The
T230 4-17 NNP denotes Transcription
T231 18-24 NNP denotes Factor
T232 25-32 NNP denotes C/EBP-β
T233 33-41 NNP denotes Mediates
T234 42-54 NNP denotes Constitutive
T235 55-58 CC denotes and
T236 59-72 JJ denotes LPS-Inducible
T237 73-86 NN denotes Transcription
T238 87-89 IN denotes of
R47 T240 T238 arg2Of SerpinB2,of
R48 T240 T239 arg1Of SerpinB2,Murine
R49 T241 T242 arg1Of SerpinB2,or
R50 T243 T242 arg2Of plasminogen,or
R51 T246 T241 arg1Of type,SerpinB2
R52 T246 T243 arg1Of type,plasminogen
R53 T246 T244 arg1Of type,activator
R54 T246 T245 arg1Of type,inhibitor
R55 T246 T247 arg1Of type,2
R56 T246 T248 arg1Of type,(
R57 T246 T251 arg1Of type,is
R58 T246 T253 arg2Of type,induced
R59 T246 T262 arg1Of type,is
R60 T246 T263 arg2Of type,linked
R61 T249 T248 arg2Of PAI-2,(
R62 T250 T248 arg3Of ),(
R63 T253 T251 arg2Of induced,is
R64 T253 T252 arg1Of induced,highly
R65 T253 T254 arg1Of induced,in
R66 T253 T256 arg1Of induced,in
R67 T253 T261 arg1Of induced,and
R68 T255 T254 arg2Of macrophages,in
R69 T257 T256 arg2Of response,in
R70 T257 T258 arg1Of response,to
R71 T260 T258 arg2Of stimuli,to
R72 T260 T259 arg1Of stimuli,inflammatory
R73 T263 T261 arg2Of linked,and
R74 T263 T262 arg2Of linked,is
R75 T263 T264 arg1Of linked,to
R76 T266 T264 arg2Of modulation,to
R77 T266 T265 arg1Of modulation,the
R78 T266 T267 arg1Of modulation,of
R79 T269 T268 arg1Of immunity,innate
R80 T269 T270 arg1Of immunity,","
R82 T272 T270 arg2Of survival,","
R83 T272 T271 arg1Of survival,macrophage
R667 T234 T231 arg1Of Constitutive,Factor
R668 T234 T232 arg1Of Constitutive,C/EBP-β
R669 T234 T233 arg1Of Constitutive,Mediates
R670 T234 T235 arg1Of Constitutive,and
R671 T236 T235 arg2Of LPS-Inducible,and
R673 T237 T234 arg1Of Transcription,Constitutive
R674 T237 T236 arg1Of Transcription,LPS-Inducible
R675 T237 T238 arg1Of Transcription,of
R666 T234 T230 arg1Of Constitutive,Transcription
R672 T237 T229 arg1Of Transcription,The

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T157 25-32 Protein denotes C/EBP-β
T158 97-105 Protein denotes SerpinB2
T159 156-164 Protein denotes SerpinB2
T160 168-206 Protein denotes plasminogen activator inhibitor type 2
T161 208-213 Protein denotes PAI-2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T530 156-164 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T537 205-211 http://www.uniprot.org/uniprot/P05120 denotes 2 (PAI
T524 25-32 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T529 97-105 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T176 4-17 http://purl.obolibrary.org/obo/GO_0006351 denotes Transcription
T177 73-86 http://purl.obolibrary.org/obo/GO_0006351 denotes Transcription
T182 319-334 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immunity
T180 251-275 http://purl.obolibrary.org/obo/GO_0006954 denotes response to inflammatory
T178 168-189 http://purl.obolibrary.org/obo/GO_0031639 denotes plasminogen activator

sentences

Id Subject Object Predicate Lexical cue
T99 0-105 Sentence denotes The Transcription Factor C/EBP-β Mediates Constitutive and LPS-Inducible Transcription of Murine SerpinB2
T1 0-105 Sentence denotes The Transcription Factor C/EBP-β Mediates Constitutive and LPS-Inducible Transcription of Murine SerpinB2
T2 106-145 Sentence denotes C/EBP-β Mediates SerpinB2 Transcription
T3 147-155 Sentence denotes Abstract

simple1

Id Subject Object Predicate Lexical cue
T210 25-32 Protein denotes C/EBP-β
T212 156-164 Protein denotes SerpinB2
T213 168-206 Protein denotes plasminogen activator inhibitor type 2
T214 208-213 Protein denotes PAI-2
T211 97-105 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T510 59-72 Positive_regulation denotes LPS-Inducible
T511 73-86 Transcription denotes Transcription
T512 225-232 Positive_regulation denotes induced
T491 25-32 Protein denotes C/EBP-β
T492 97-105 Protein denotes SerpinB2
T493 156-164 Protein denotes SerpinB2
T494 168-206 Protein denotes plasminogen activator inhibitor type 2
T495 208-213 Protein denotes PAI-2
R307 T511 T510 themeOf Transcription,LPS-Inducible
R676 T492 T511 themeOf SerpinB2,Transcription
R677 T493 T512 themeOf SerpinB2,induced
R678 T494 T512 themeOf plasminogen activator inhibitor type 2,induced
R679 T495 T512 themeOf PAI-2,induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T601 25-32 Protein denotes C/EBP-β
T602 97-105 Protein denotes SerpinB2
T620 73-86 Transcription denotes Transcription
T621 33-41 Positive_regulation denotes Mediates
T603 156-164 Protein denotes SerpinB2
T604 168-206 Protein denotes plasminogen activator inhibitor type 2
T605 208-213 Protein denotes PAI-2
T622 225-232 Positive_regulation denotes induced
R694 T601 T621 causeOf C/EBP-β,Mediates
R715 T602 T620 themeOf SerpinB2,Transcription
R717 T604 T622 themeOf plasminogen activator inhibitor type 2,induced
R732 T620 T621 themeOf Transcription,Mediates

DLUT931

Id Subject Object Predicate Lexical cue
T567 25-32 Protein denotes C/EBP-β
T568 97-105 Protein denotes SerpinB2
T586 73-86 Transcription denotes Transcription
T587 33-41 Positive_regulation denotes Mediates
T588 59-72 Positive_regulation denotes LPS-Inducible
T569 156-164 Protein denotes SerpinB2
T570 168-206 Protein denotes plasminogen activator inhibitor type 2
T571 208-213 Protein denotes PAI-2
T589 225-232 Positive_regulation denotes induced
R684 T570 T589 themeOf plasminogen activator inhibitor type 2,induced
R681 T567 T587 causeOf C/EBP-β,Mediates
R682 T568 T586 themeOf SerpinB2,Transcription
R683 T569 T589 themeOf SerpinB2,induced
R691 T586 T587 themeOf Transcription,Mediates
R692 T586 T588 themeOf Transcription,LPS-Inducible

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T749 87-105 Protein denotes of Murine SerpinB2
T758 59-105 Transcription denotes LPS-Inducible Transcription of Murine SerpinB2
T731 0-32 Protein denotes The Transcription Factor C/EBP-β
T705 336-346 Entity denotes macrophage
T723 236-247 Entity denotes macrophages
T739 208-213 Protein denotes PAI-2
T740 156-214 Protein denotes SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2)
T744 168-214 Protein denotes plasminogen activator inhibitor type 2 (PAI-2)
R349 T749 T758 themeOf of Murine SerpinB2,LPS-Inducible Transcription of Murine SerpinB2

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T643 225-232 Positive_regulation denotes induced
T642 225-232 Positive_regulation denotes induced
T640 208-213 Protein denotes PAI-2
T635 4-32 Protein denotes Transcription Factor C/EBP-β
T636 90-105 Protein denotes Murine SerpinB2
T637 73-86 Transcription denotes Transcription
T638 33-41 Positive_regulation denotes Mediates
T639 168-206 Protein denotes plasminogen activator inhibitor type 2
R322 T640 T643 themeOf PAI-2,induced
R703 T635 T638 causeOf Transcription Factor C/EBP-β,Mediates
R704 T636 T637 themeOf Murine SerpinB2,Transcription
R705 T637 T638 themeOf Transcription,Mediates
R706 T639 T642 themeOf plasminogen activator inhibitor type 2,induced

testone

Id Subject Object Predicate Lexical cue
T20 25-32 Protein denotes C/EBP-β
T21 97-105 Protein denotes SerpinB2
T24 208-213 Protein denotes PAI-2
T23 168-206 Protein denotes plasminogen activator inhibitor type 2
T22 156-164 Protein denotes SerpinB2
R1 T24 T23 equivalentTo PAI-2,plasminogen activator inhibitor type 2

test3

Id Subject Object Predicate Lexical cue
T49 25-32 Protein denotes C/EBP-β
T50 97-105 Protein denotes SerpinB2
T68 25-32 Protein denotes C/EBP-β
T69 97-105 Protein denotes SerpinB2
T73 225-232 Positive_regulation denotes induced
T72 208-213 Protein denotes PAI-2
T71 168-206 Protein denotes plasminogen activator inhibitor type 2
T70 156-164 Protein denotes SerpinB2
T53 208-213 Protein denotes PAI-2
T52 168-206 Protein denotes plasminogen activator inhibitor type 2
T51 156-164 Protein denotes SerpinB2
R15 T71 T73 themeOf plasminogen activator inhibitor type 2,induced
R16 T72 T71 equivalentTo PAI-2,plasminogen activator inhibitor type 2