PMC:3586680 / 3911-4029
Annnotations
test3
{"project":"test3","denotations":[{"id":"T854","span":{"begin":73,"end":83},"obj":"Gene_expression"},{"id":"T853","span":{"begin":60,"end":64},"obj":"Protein"},{"id":"T852","span":{"begin":15,"end":19},"obj":"Protein"},{"id":"T851","span":{"begin":3,"end":11},"obj":"Positive_regulation"},{"id":"T821","span":{"begin":60,"end":64},"obj":"Protein"},{"id":"T820","span":{"begin":15,"end":19},"obj":"Protein"}],"relations":[{"id":"R460","pred":"themeOf","subj":"T853","obj":"T854"}],"text":"An increase in MGMT gene promoter methylation, which blocks MGMT protein expression, prolongs cancer patient survival."}
testone
{"project":"testone","denotations":[{"id":"T785","span":{"begin":60,"end":64},"obj":"Protein"},{"id":"T784","span":{"begin":15,"end":19},"obj":"Protein"},{"id":"T804","span":{"begin":73,"end":83},"obj":"Gene_expression"}],"relations":[{"id":"R449","pred":"themeOf","subj":"T785","obj":"T804"}],"text":"An increase in MGMT gene promoter methylation, which blocks MGMT protein expression, prolongs cancer patient survival."}
bionlp-st-ge-2016-test-tees
{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T2288","span":{"begin":53,"end":59},"obj":"Negative_regulation"},{"id":"T2287","span":{"begin":73,"end":83},"obj":"Gene_expression"},{"id":"T2286","span":{"begin":3,"end":11},"obj":"Positive_regulation"},{"id":"T2285","span":{"begin":60,"end":72},"obj":"Protein"},{"id":"T2284","span":{"begin":15,"end":19},"obj":"Protein"}],"relations":[{"id":"R1533","pred":"themeOf","subj":"T2284","obj":"T2286"},{"id":"R1534","pred":"themeOf","subj":"T2285","obj":"T2287"},{"id":"R1537","pred":"themeOf","subj":"T2287","obj":"T2288"}],"text":"An increase in MGMT gene promoter methylation, which blocks MGMT protein expression, prolongs cancer patient survival."}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T3063","span":{"begin":117,"end":118},"obj":"."},{"id":"T3062","span":{"begin":109,"end":117},"obj":"NN"},{"id":"T3061","span":{"begin":101,"end":108},"obj":"NN"},{"id":"T3060","span":{"begin":94,"end":100},"obj":"NN"},{"id":"T3059","span":{"begin":85,"end":93},"obj":"VBZ"},{"id":"T3058","span":{"begin":83,"end":84},"obj":","},{"id":"T3057","span":{"begin":73,"end":83},"obj":"NN"},{"id":"T3056","span":{"begin":65,"end":72},"obj":"NN"},{"id":"T3055","span":{"begin":60,"end":64},"obj":"NNP"},{"id":"T3054","span":{"begin":53,"end":59},"obj":"VBZ"},{"id":"T3053","span":{"begin":47,"end":52},"obj":"WDT"},{"id":"T3052","span":{"begin":45,"end":46},"obj":","},{"id":"T3051","span":{"begin":34,"end":45},"obj":"NN"},{"id":"T3050","span":{"begin":25,"end":33},"obj":"NN"},{"id":"T3049","span":{"begin":20,"end":24},"obj":"NN"},{"id":"T3048","span":{"begin":15,"end":19},"obj":"NNP"},{"id":"T3047","span":{"begin":12,"end":14},"obj":"IN"},{"id":"T3046","span":{"begin":3,"end":11},"obj":"NN"},{"id":"T3045","span":{"begin":0,"end":2},"obj":"DT"}],"relations":[{"id":"R2079","pred":"compound","subj":"T3055","obj":"T3057"},{"id":"R2085","pred":"compound","subj":"T3056","obj":"T3057"},{"id":"R2089","pred":"dobj","subj":"T3057","obj":"T3054"},{"id":"R2093","pred":"punct","subj":"T3058","obj":"T3059"},{"id":"R2097","pred":"ROOT","subj":"T3059","obj":"T3059"},{"id":"R2099","pred":"compound","subj":"T3060","obj":"T3062"},{"id":"R2100","pred":"compound","subj":"T3061","obj":"T3062"},{"id":"R2103","pred":"dobj","subj":"T3062","obj":"T3059"},{"id":"R2110","pred":"punct","subj":"T3063","obj":"T3059"},{"id":"R2132","pred":"det","subj":"T3045","obj":"T3046"},{"id":"R2134","pred":"nsubj","subj":"T3046","obj":"T3059"},{"id":"R2135","pred":"prep","subj":"T3047","obj":"T3046"},{"id":"R2136","pred":"compound","subj":"T3048","obj":"T3051"},{"id":"R2138","pred":"compound","subj":"T3049","obj":"T3050"},{"id":"R2139","pred":"compound","subj":"T3050","obj":"T3051"},{"id":"R2140","pred":"pobj","subj":"T3051","obj":"T3047"},{"id":"R2142","pred":"punct","subj":"T3052","obj":"T3051"},{"id":"R2143","pred":"nsubj","subj":"T3053","obj":"T3054"},{"id":"R2144","pred":"relcl","subj":"T3054","obj":"T3051"}],"text":"An increase in MGMT gene promoter methylation, which blocks MGMT protein expression, prolongs cancer patient survival."}
bionlp-st-ge-2016-test-ihmc
{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T2502","span":{"begin":47,"end":84},"obj":"Negative_regulation"},{"id":"T2501","span":{"begin":0,"end":46},"obj":"Positive_regulation"},{"id":"T2496","span":{"begin":60,"end":84},"obj":"Gene_expression"},{"id":"T2482","span":{"begin":60,"end":64},"obj":"Protein"},{"id":"T2443","span":{"begin":12,"end":46},"obj":"Protein"},{"id":"T2437","span":{"begin":15,"end":19},"obj":"Protein"},{"id":"T2409","span":{"begin":25,"end":33},"obj":"Entity"},{"id":"T2388","span":{"begin":60,"end":72},"obj":"Protein"}],"relations":[{"id":"R1563","pred":"themeOf","subj":"T2388","obj":"T2496"},{"id":"R1574","pred":"themeOf","subj":"T2496","obj":"T2502"}],"text":"An increase in MGMT gene promoter methylation, which blocks MGMT protein expression, prolongs cancer patient survival."}
DLUT931
{"project":"DLUT931","denotations":[{"id":"T2193","span":{"begin":53,"end":59},"obj":"Negative_regulation"},{"id":"T2192","span":{"begin":73,"end":83},"obj":"Gene_expression"},{"id":"T2191","span":{"begin":3,"end":11},"obj":"Positive_regulation"},{"id":"T2169","span":{"begin":60,"end":64},"obj":"Protein"},{"id":"T2168","span":{"begin":15,"end":19},"obj":"Protein"}],"relations":[{"id":"R1495","pred":"themeOf","subj":"T2168","obj":"T2191"},{"id":"R1496","pred":"themeOf","subj":"T2169","obj":"T2192"},{"id":"R1507","pred":"themeOf","subj":"T2192","obj":"T2193"}],"text":"An increase in MGMT gene promoter methylation, which blocks MGMT protein expression, prolongs cancer patient survival."}
BioNLP16_Messiy
{"project":"BioNLP16_Messiy","denotations":[{"id":"T2245","span":{"begin":60,"end":64},"obj":"Protein"},{"id":"T2244","span":{"begin":15,"end":19},"obj":"Protein"},{"id":"T2264","span":{"begin":53,"end":59},"obj":"Negative_regulation"},{"id":"T2263","span":{"begin":73,"end":83},"obj":"Gene_expression"}],"relations":[{"id":"R1524","pred":"themeOf","subj":"T2245","obj":"T2263"},{"id":"R1543","pred":"themeOf","subj":"T2263","obj":"T2264"}],"text":"An increase in MGMT gene promoter methylation, which blocks MGMT protein expression, prolongs cancer patient survival."}
BioNLP16_DUT
{"project":"BioNLP16_DUT","denotations":[{"id":"T2130","span":{"begin":53,"end":59},"obj":"Negative_regulation"},{"id":"T2129","span":{"begin":73,"end":83},"obj":"Gene_expression"},{"id":"T2111","span":{"begin":60,"end":64},"obj":"Protein"},{"id":"T2110","span":{"begin":15,"end":19},"obj":"Protein"}],"relations":[{"id":"R1478","pred":"themeOf","subj":"T2111","obj":"T2129"},{"id":"R1490","pred":"themeOf","subj":"T2129","obj":"T2130"}],"text":"An increase in MGMT gene promoter methylation, which blocks MGMT protein expression, prolongs cancer patient survival."}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T2153","span":{"begin":60,"end":64},"obj":"http://www.uniprot.org/uniprot/P16455"},{"id":"T2152","span":{"begin":15,"end":19},"obj":"http://www.uniprot.org/uniprot/P16455"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"An increase in MGMT gene promoter methylation, which blocks MGMT protein expression, prolongs cancer patient survival."}
bionlp-st-ge-2016-test-proteins
{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T1952","span":{"begin":60,"end":64},"obj":"Protein"},{"id":"T1951","span":{"begin":15,"end":19},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"An increase in MGMT gene promoter methylation, which blocks MGMT protein expression, prolongs cancer patient survival."}
bionlp-st-ge-2016-coref
{"project":"bionlp-st-ge-2016-coref","denotations":[{"id":"T1940","span":{"begin":34,"end":45},"obj":"Antecedent"},{"id":"T1939","span":{"begin":47,"end":52},"obj":"Anaphor"}],"relations":[{"id":"R1455","pred":"boundBy","subj":"T1939","obj":"T1940"}],"namespaces":[{"prefix":"_base","uri":"https://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"An increase in MGMT gene promoter methylation, which blocks MGMT protein expression, prolongs cancer patient survival."}
pmc-enju-pas
{"project":"pmc-enju-pas","denotations":[{"id":"T1450","span":{"begin":109,"end":117},"obj":"NN"},{"id":"T1449","span":{"begin":101,"end":108},"obj":"NN"},{"id":"T1448","span":{"begin":94,"end":100},"obj":"NN"},{"id":"T1447","span":{"begin":85,"end":93},"obj":"VB"},{"id":"T1446","span":{"begin":83,"end":84},"obj":"-COMMA-"},{"id":"T1445","span":{"begin":73,"end":83},"obj":"NN"},{"id":"T1444","span":{"begin":65,"end":72},"obj":"NN"},{"id":"T1443","span":{"begin":60,"end":64},"obj":"NN"},{"id":"T1442","span":{"begin":53,"end":59},"obj":"VB"},{"id":"T1441","span":{"begin":47,"end":52},"obj":"WDT"},{"id":"T1440","span":{"begin":45,"end":46},"obj":"-COMMA-"},{"id":"T1439","span":{"begin":34,"end":45},"obj":"NN"},{"id":"T1438","span":{"begin":25,"end":33},"obj":"NN"},{"id":"T1437","span":{"begin":20,"end":24},"obj":"NN"},{"id":"T1436","span":{"begin":15,"end":19},"obj":"NN"},{"id":"T1435","span":{"begin":12,"end":14},"obj":"IN"},{"id":"T1434","span":{"begin":3,"end":11},"obj":"NN"},{"id":"T1433","span":{"begin":0,"end":2},"obj":"DT"}],"relations":[{"id":"R984","pred":"arg1Of","subj":"T1434","obj":"T1433"},{"id":"R985","pred":"arg1Of","subj":"T1434","obj":"T1435"},{"id":"R986","pred":"arg1Of","subj":"T1434","obj":"T1440"},{"id":"R987","pred":"arg1Of","subj":"T1434","obj":"T1441"},{"id":"R988","pred":"arg1Of","subj":"T1434","obj":"T1442"},{"id":"R989","pred":"arg1Of","subj":"T1434","obj":"T1447"},{"id":"R990","pred":"arg2Of","subj":"T1439","obj":"T1435"},{"id":"R991","pred":"arg1Of","subj":"T1439","obj":"T1436"},{"id":"R992","pred":"arg1Of","subj":"T1439","obj":"T1437"},{"id":"R993","pred":"arg1Of","subj":"T1439","obj":"T1438"},{"id":"R994","pred":"arg2Of","subj":"T1445","obj":"T1442"},{"id":"R995","pred":"arg1Of","subj":"T1445","obj":"T1443"},{"id":"R996","pred":"arg1Of","subj":"T1445","obj":"T1444"},{"id":"R997","pred":"arg1Of","subj":"T1447","obj":"T1446"},{"id":"R998","pred":"arg2Of","subj":"T1450","obj":"T1447"},{"id":"R999","pred":"arg1Of","subj":"T1450","obj":"T1448"},{"id":"R1000","pred":"arg1Of","subj":"T1450","obj":"T1449"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"An increase in MGMT gene promoter methylation, which blocks MGMT protein expression, prolongs cancer patient survival."}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T2007","span":{"begin":34,"end":45},"obj":"http://purl.obolibrary.org/obo/GO_0032259"},{"id":"T1996","span":{"begin":60,"end":64},"obj":"http://purl.obolibrary.org/obo/GO_0003908"},{"id":"T1995","span":{"begin":15,"end":19},"obj":"http://purl.obolibrary.org/obo/GO_0003908"}],"text":"An increase in MGMT gene promoter methylation, which blocks MGMT protein expression, prolongs cancer patient survival."}
GO-MF
{"project":"GO-MF","denotations":[{"id":"T2023","span":{"begin":60,"end":64},"obj":"http://purl.obolibrary.org/obo/GO_0003908"},{"id":"T2022","span":{"begin":15,"end":19},"obj":"http://purl.obolibrary.org/obo/GO_0003908"}],"text":"An increase in MGMT gene promoter methylation, which blocks MGMT protein expression, prolongs cancer patient survival."}
sentences
{"project":"sentences","denotations":[{"id":"T892","span":{"begin":0,"end":118},"obj":"Sentence"},{"id":"T28","span":{"begin":0,"end":118},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"An increase in MGMT gene promoter methylation, which blocks MGMT protein expression, prolongs cancer patient survival."}
simple1
{"project":"simple1","denotations":[{"id":"T2059","span":{"begin":60,"end":64},"obj":"Protein"},{"id":"T2058","span":{"begin":15,"end":19},"obj":"Protein"}],"text":"An increase in MGMT gene promoter methylation, which blocks MGMT protein expression, prolongs cancer patient survival."}