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PMC:3585731 / 967-1263 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T28 187-197 Gene_expression denotes production
T27 43-53 Gene_expression denotes production
T20 182-186 Protein denotes TNFα
T19 57-61 Protein denotes TNFα
T18 6-10 Protein denotes RIP1
R3 T19 T27 themeOf TNFα,production
R4 T20 T28 themeOf TNFα,production

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T337 285-294 NN denotes mechanism
T336 281-284 DT denotes the
T335 276-280 IN denotes into
T334 267-275 NN denotes insights
T333 263-266 JJ denotes new
T332 255-262 VB denotes provide
T331 247-254 NN denotes results
T330 243-246 PRP-DOLLAR- denotes our
T329 241-242 -COMMA- denotes ,
T328 234-241 RB denotes Overall
T327 227-232 NN denotes death
T326 222-226 NN denotes cell
T325 219-221 TO denotes to
T324 206-218 VB denotes contributing
T323 198-205 IN denotes without
T322 187-197 NN denotes production
T321 182-186 NN denotes TNFα
T320 159-181 JJ denotes necroptosis-associated
T319 154-158 IN denotes over
T318 146-153 NN denotes control
T317 136-145 VB denotes exhibited
T316 132-135 NN denotes Akt
T315 130-131 -COMMA- denotes ,
T314 119-130 NN denotes macrophages
T313 115-118 CC denotes and
T312 103-114 NN denotes fibroblasts
T311 98-102 NN denotes lung
T310 92-97 NN denotes mouse
T309 89-91 IN denotes as
T308 84-88 JJ denotes such
T307 82-83 -COMMA- denotes ,
T306 77-82 NN denotes types
T305 72-76 NN denotes cell
T304 66-71 JJ denotes other
T303 63-65 IN denotes In
T302 57-61 NN denotes TNFα
T301 54-56 IN denotes of
T300 43-53 NN denotes production
T299 33-42 JJ denotes autocrine
T298 29-32 CC denotes and
T297 18-28 NN denotes activation
T296 14-17 NN denotes JNK
T295 11-13 TO denotes to
T294 6-10 NN denotes RIP1
T293 0-5 VB denotes links
R153 T294 T293 arg2Of RIP1,links
R154 T294 T295 arg1Of RIP1,to
R155 T297 T296 arg1Of activation,JNK
R156 T297 T298 arg1Of activation,and
R157 T298 T295 arg2Of and,to
R158 T300 T298 arg2Of production,and
R159 T300 T299 arg1Of production,autocrine
R160 T300 T301 arg1Of production,of
R161 T302 T301 arg2Of TNFα,of
R162 T306 T303 arg2Of types,In
R163 T306 T304 arg1Of types,other
R164 T306 T305 arg1Of types,cell
R165 T306 T307 arg1Of types,","
R166 T306 T309 arg1Of types,as
R167 T309 T308 arg1Of as,such
R168 T312 T310 arg1Of fibroblasts,mouse
R169 T312 T311 arg1Of fibroblasts,lung
R170 T312 T313 arg1Of fibroblasts,and
R171 T313 T309 arg2Of and,as
R172 T314 T313 arg2Of macrophages,and
R173 T316 T317 arg1Of Akt,exhibited
R174 T316 T324 arg1Of Akt,contributing
R175 T317 T303 arg1Of exhibited,In
R176 T317 T315 arg1Of exhibited,","
R177 T317 T319 arg1Of exhibited,over
R178 T317 T323 arg1Of exhibited,without
R179 T318 T317 arg2Of control,exhibited
R180 T322 T319 arg2Of production,over
R181 T322 T320 arg1Of production,necroptosis-associated
R182 T322 T321 arg1Of production,TNFα
R183 T324 T323 arg2Of contributing,without
R184 T324 T325 arg1Of contributing,to
R185 T327 T325 arg2Of death,to
R186 T327 T326 arg1Of death,cell
R187 T331 T330 arg1Of results,our
R188 T331 T332 arg1Of results,provide
R189 T332 T328 arg1Of provide,Overall
R190 T332 T329 arg1Of provide,","
R192 T334 T332 arg2Of insights,provide
R193 T334 T333 arg1Of insights,new
R194 T334 T335 arg1Of insights,into
R195 T337 T336 arg1Of mechanism,the

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T95 6-10 Protein denotes RIP1
T96 57-61 Protein denotes TNFα
T97 182-186 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T409 6-10 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T404 182-186 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T403 57-61 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T399 132-135 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T392 132-135 http://www.uniprot.org/uniprot/P31751 denotes Akt
T385 132-135 http://www.uniprot.org/uniprot/P31749 denotes Akt

UBERON-AE

Id Subject Object Predicate Lexical cue
T59 98-102 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung

GO-BP

Id Subject Object Predicate Lexical cue
T133 14-17 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T122 227-232 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T119 222-232 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T113 159-170 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T105 159-170 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-MF

Id Subject Object Predicate Lexical cue
T136 14-17 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

GO-CC

Id Subject Object Predicate Lexical cue
T139 222-226 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T138 72-76 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T68 63-233 Sentence denotes In other cell types, such as mouse lung fibroblasts and macrophages, Akt exhibited control over necroptosis-associated TNFα production without contributing to cell death.
T11 63-233 Sentence denotes In other cell types, such as mouse lung fibroblasts and macrophages, Akt exhibited control over necroptosis-associated TNFα production without contributing to cell death.

simple1

Id Subject Object Predicate Lexical cue
T150 6-10 Protein denotes RIP1
T151 57-61 Protein denotes TNFα
T152 182-186 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T360 6-10 Protein denotes RIP1
T361 57-61 Protein denotes TNFα
T362 182-186 Protein denotes TNFα
T368 0-5 Positive_regulation denotes links
T369 187-197 Gene_expression denotes production
R453 T360 T368 themeOf RIP1,links
R454 T362 T369 themeOf TNFα,production

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T448 6-10 Protein denotes RIP1
T449 57-61 Protein denotes TNFα
T450 182-186 Protein denotes TNFα
T455 187-197 Gene_expression denotes production
R472 T450 T455 themeOf TNFα,production

DLUT931

Id Subject Object Predicate Lexical cue
T427 159-181 Positive_regulation denotes necroptosis-associated
T426 187-197 Gene_expression denotes production
T417 6-10 Protein denotes RIP1
T418 57-61 Protein denotes TNFα
T419 182-186 Protein denotes TNFα
R211 T426 T427 themeOf production,necroptosis-associated
R461 T419 T426 themeOf TNFα,production

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T762 14-28 Positive_regulation denotes JNK activation
T761 33-61 Gene_expression denotes autocrine production of TNFα
T759 159-197 Gene_expression denotes necroptosis-associated TNFα production
T756 54-61 Protein denotes of TNFα
T755 119-131 Entity denotes macrophages,
T752 6-10 Protein denotes RIP1
T749 132-135 Protein denotes Akt
T747 182-186 Protein denotes TNFα
T740 14-17 Protein denotes JNK
T739 66-114 Entity denotes other cell types, such as mouse lung fibroblasts
T731 66-91 Entity denotes other cell types, such as
R434 T740 T762 themeOf JNK,JNK activation
R436 T747 T759 themeOf TNFα,necroptosis-associated TNFα production
R439 T756 T761 themeOf of TNFα,autocrine production of TNFα

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T674 255-262 VB denotes provide
T673 247-254 NNS denotes results
T672 243-246 PRP$ denotes our
T671 241-242 , denotes ,
T670 234-241 RB denotes Overall
T669 232-233 . denotes .
T668 227-232 NN denotes death
T667 222-226 NN denotes cell
T666 219-221 TO denotes to
T665 206-218 VBG denotes contributing
T664 198-205 IN denotes without
T663 187-197 NN denotes production
T662 182-186 JJ denotes TNFα
T661 159-181 JJ denotes necroptosis-associated
T660 154-158 IN denotes over
T659 146-153 NN denotes control
T658 136-145 VBD denotes exhibited
T657 132-135 NNP denotes Akt
T656 130-131 , denotes ,
T655 119-130 NNS denotes macrophages
T654 115-118 CC denotes and
T653 103-114 NNS denotes fibroblasts
T652 98-102 NN denotes lung
T651 92-97 NN denotes mouse
T650 89-91 IN denotes as
T649 84-88 JJ denotes such
T648 82-83 , denotes ,
T647 77-82 NNS denotes types
T646 72-76 NN denotes cell
T645 66-71 JJ denotes other
T644 63-65 IN denotes In
T643 61-62 . denotes .
T642 57-61 NNP denotes TNFα
T641 54-56 IN denotes of
T640 43-53 NN denotes production
T639 33-42 NN denotes autocrine
T638 29-32 CC denotes and
T637 18-28 NN denotes activation
T636 14-17 NNP denotes JNK
T635 11-13 TO denotes to
T634 6-10 VBP denotes RIP1
T633 0-5 NNS denotes links
T675 263-266 JJ denotes new
T676 267-275 NNS denotes insights
T677 276-280 IN denotes into
T678 281-284 DT denotes the
T679 285-294 NN denotes mechanism
R373 T633 T634 nsubj links,RIP1
R375 T635 T634 prep to,RIP1
R376 T636 T637 compound JNK,activation
R377 T637 T640 nmod activation,production
R378 T638 T637 cc and,activation
R379 T639 T637 conj autocrine,activation
R380 T640 T635 pobj production,to
R381 T641 T640 prep of,production
R382 T642 T641 pobj TNFα,of
R383 T643 T634 punct .,RIP1
R384 T644 T658 prep In,exhibited
R385 T645 T647 amod other,types
R386 T646 T647 compound cell,types
R387 T647 T644 pobj types,In
R388 T648 T647 punct ",",types
R389 T649 T650 amod such,as
R390 T650 T647 prep as,types
R391 T651 T653 compound mouse,fibroblasts
R392 T652 T653 compound lung,fibroblasts
R393 T653 T650 pobj fibroblasts,as
R394 T654 T653 cc and,fibroblasts
R395 T655 T653 conj macrophages,fibroblasts
R396 T656 T658 punct ",",exhibited
R397 T657 T658 nsubj Akt,exhibited
R398 T658 T658 ROOT exhibited,exhibited
R399 T659 T658 dobj control,exhibited
R400 T660 T659 prep over,control
R401 T661 T663 amod necroptosis-associated,production
R402 T662 T663 compound TNFα,production
R403 T663 T660 pobj production,over
R404 T664 T658 prep without,exhibited
R405 T665 T664 pcomp contributing,without
R406 T666 T665 prep to,contributing
R407 T667 T668 compound cell,death
R408 T668 T666 pobj death,to
R409 T669 T658 punct .,exhibited
R410 T670 T674 advmod Overall,provide
R411 T671 T674 punct ",",provide
R412 T672 T673 poss our,results
R413 T673 T674 nsubj results,provide
R414 T674 T674 ROOT provide,provide
R474 T675 T676 amod new,insights
R475 T676 T674 dobj insights,provide
R476 T677 T676 prep into,insights
R477 T678 T679 det the,mechanism
R478 T679 T677 pobj mechanism,into

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T484 146-153 Regulation denotes control
T483 187-197 Gene_expression denotes production
T482 182-186 Protein denotes TNFα
T481 18-28 Positive_regulation denotes activation
T480 18-28 Positive_regulation denotes activation
T479 57-61 Protein denotes TNFα
T478 14-17 Protein denotes JNK
T477 6-10 Protein denotes RIP1
R222 T478 T480 themeOf JNK,activation
R223 T479 T481 themeOf TNFα,activation
R224 T482 T483 themeOf TNFα,production
R225 T483 T484 themeOf production,control

test3

Id Subject Object Predicate Lexical cue
T57 187-197 Gene_expression denotes production
T56 182-186 Protein denotes TNFα
T55 57-61 Protein denotes TNFα
T54 43-53 Gene_expression denotes production
T53 6-10 Protein denotes RIP1
T38 182-186 Protein denotes TNFα
T37 57-61 Protein denotes TNFα
T36 6-10 Protein denotes RIP1
R13 T55 T54 themeOf TNFα,production
R14 T56 T57 themeOf TNFα,production