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PMC:3585731 / 9-247 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T11 5-9 Protein denotes TNFα
T12 34-38 Protein denotes RIP1

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T155 5-9 NNP denotes TNFα
T156 10-19 NNP denotes Synthesis
T157 20-30 NNP denotes Downstream
T158 31-33 IN denotes of
T159 34-38 NN denotes RIP1
T160 39-45 NN denotes Kinase
T161 46-56 NN denotes Activation
T162 57-63 IN denotes during
T163 64-75 NN denotes Necroptosis
T180 234-236 IN denotes of
T179 221-233 NN denotes pathogenesis
T178 217-220 DT denotes the
T177 214-216 IN denotes in
T176 203-213 VB denotes implicated
T175 198-202 VB denotes been
T174 194-197 VB denotes has
T173 189-193 WDT denotes that
T172 183-188 NN denotes death
T171 178-182 NN denotes cell
T170 169-177 JJ denotes necrotic
T169 166-168 IN denotes of
T168 161-165 NN denotes form
T167 151-160 VB denotes regulated
T166 149-150 DT denotes a
T165 146-148 VB denotes is
T164 134-145 NN denotes Necroptosis
R18 T157 T155 arg1Of Downstream,TNFα
R19 T157 T156 arg1Of Downstream,Synthesis
R20 T157 T158 arg1Of Downstream,of
R21 T161 T158 arg2Of Activation,of
R22 T161 T159 arg1Of Activation,RIP1
R23 T161 T160 arg1Of Activation,Kinase
R24 T163 T162 arg2Of Necroptosis,during
R25 T164 T165 arg1Of Necroptosis,is
R26 T168 T165 arg2Of form,is
R27 T168 T166 arg1Of form,a
R28 T168 T167 arg2Of form,regulated
R29 T168 T169 arg1Of form,of
R30 T168 T173 arg1Of form,that
R31 T168 T174 arg1Of form,has
R32 T168 T175 arg1Of form,been
R33 T168 T176 arg2Of form,implicated
R34 T172 T169 arg2Of death,of
R35 T172 T170 arg1Of death,necrotic
R36 T172 T171 arg1Of death,cell
R37 T176 T174 arg2Of implicated,has
R38 T176 T175 arg2Of implicated,been
R39 T176 T177 arg1Of implicated,in
R40 T179 T177 arg2Of pathogenesis,in
R41 T179 T178 arg1Of pathogenesis,the
R42 T179 T180 arg1Of pathogenesis,of

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T88 5-9 Protein denotes TNFα
T89 34-38 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T401 5-9 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T405 34-38 http://www.uniprot.org/uniprot/Q13546 denotes RIP1

GO-BP

Id Subject Object Predicate Lexical cue
T98 10-19 http://purl.obolibrary.org/obo/GO_0009058 denotes Synthesis
T99 64-75 http://purl.obolibrary.org/obo/GO_0070266 denotes Necroptosis
T107 64-75 http://purl.obolibrary.org/obo/GO_0097528 denotes Necroptosis
T124 221-233 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T121 183-188 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T118 178-188 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T117 169-188 http://purl.obolibrary.org/obo/GO_0097300 denotes necrotic cell death
T116 169-188 http://purl.obolibrary.org/obo/GO_0070265 denotes necrotic cell death
T115 169-188 http://purl.obolibrary.org/obo/GO_0010939 denotes necrotic cell death
T108 134-145 http://purl.obolibrary.org/obo/GO_0097528 denotes Necroptosis
T100 134-145 http://purl.obolibrary.org/obo/GO_0070266 denotes Necroptosis

GO-CC

Id Subject Object Predicate Lexical cue
T137 178-182 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T2 76-123 Sentence denotes Interplay of Akt and JNK in Necroptosis Control
T3 125-133 Sentence denotes Abstract

simple1

Id Subject Object Predicate Lexical cue
T143 5-9 Protein denotes TNFα
T144 34-38 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T353 5-9 Protein denotes TNFα
T354 34-38 Protein denotes RIP1
T364 10-19 Gene_expression denotes Synthesis
T365 46-56 Positive_regulation denotes Activation
R450 T353 T364 themeOf TNFα,Synthesis
R451 T354 T365 themeOf RIP1,Activation

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T441 5-9 Protein denotes TNFα
T442 34-38 Protein denotes RIP1
T451 10-19 Gene_expression denotes Synthesis
T453 46-56 Positive_regulation denotes Activation
R469 T441 T451 themeOf TNFα,Synthesis
R470 T442 T453 themeOf RIP1,Activation

DLUT931

Id Subject Object Predicate Lexical cue
T410 5-9 Protein denotes TNFα
T411 34-38 Protein denotes RIP1
T420 10-19 Gene_expression denotes Synthesis
T421 46-56 Positive_regulation denotes Activation
R457 T410 T420 themeOf TNFα,Synthesis
R458 T411 T421 themeOf RIP1,Activation

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T741 34-45 Protein denotes RIP1 Kinase
T744 5-8 Protein denotes TNF
T753 34-38 Protein denotes RIP1
T765 34-75 Positive_regulation denotes RIP1 Kinase Activation during Necroptosis
R435 T741 T765 themeOf RIP1 Kinase,RIP1 Kinase Activation during Necroptosis

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T489 5-9 NNP denotes TNFα
T490 10-19 NNP denotes Synthesis
T491 20-30 NNP denotes Downstream
T492 31-33 IN denotes of
T493 34-38 NNP denotes RIP1
T494 39-45 NNP denotes Kinase
T495 46-56 NNP denotes Activation
T496 57-63 IN denotes during
T497 64-75 NNP denotes Necroptosis
T514 234-236 IN denotes of
T513 221-233 NN denotes pathogenesis
T512 217-220 DT denotes the
T511 214-216 IN denotes in
T510 203-213 VBN denotes implicated
T509 198-202 VBN denotes been
T508 194-197 VBZ denotes has
T507 189-193 WDT denotes that
T506 183-188 NN denotes death
T505 178-182 NN denotes cell
T504 169-177 JJ denotes necrotic
T503 166-168 IN denotes of
T502 161-165 NN denotes form
T501 151-160 JJ denotes regulated
T500 149-150 DT denotes a
T499 146-148 VBZ denotes is
T498 134-145 NNP denotes Necroptosis
R229 T489 T491 compound TNFα,Downstream
R230 T490 T491 compound Synthesis,Downstream
R232 T492 T491 prep of,Downstream
R233 T493 T494 compound RIP1,Kinase
R234 T494 T495 compound Kinase,Activation
R235 T495 T492 pobj Activation,of
R237 T497 T498 compound Necroptosis,Necroptosis
R238 T498 T496 pobj Necroptosis,during
R240 T500 T502 det a,form
R241 T501 T502 amod regulated,form
R242 T502 T499 attr form,is
R243 T503 T502 prep of,form
R244 T504 T506 amod necrotic,death
R245 T505 T506 compound cell,death
R246 T506 T503 pobj death,of
R247 T507 T510 nsubjpass that,implicated
R248 T508 T510 aux has,implicated
R249 T509 T510 auxpass been,implicated
R250 T510 T506 relcl implicated,death
R251 T511 T510 prep in,implicated
R252 T512 T513 det the,pathogenesis
R253 T513 T511 pobj pathogenesis,in
R254 T514 T513 prep of,pathogenesis

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T457 5-9 Protein denotes TNFα
T458 34-45 Protein denotes RIP1 Kinase
T459 10-19 Gene_expression denotes Synthesis
T460 46-56 Positive_regulation denotes Activation
R213 T457 T459 themeOf TNFα,Synthesis
R214 T458 T460 themeOf RIP1 Kinase,Activation

test3

Id Subject Object Predicate Lexical cue
T29 5-9 Protein denotes TNFα
T30 34-38 Protein denotes RIP1
T40 5-9 Protein denotes TNFα
T41 10-19 Gene_expression denotes Synthesis
T42 34-38 Protein denotes RIP1
R6 T40 T41 themeOf TNFα,Synthesis